mRNA_L-elsbetiae_contig13025.2399.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13025.2399.1
Unique NamemRNA_L-elsbetiae_contig13025.2399.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13025.2399.1 vs. uniprot
Match: B8ME45_TALSN (Ankyrin, putative n=1 Tax=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) TaxID=441959 RepID=B8ME45_TALSN)

HSP 1 Score: 54.3 bits (129), Expect = 4.080e-7
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 LQLIEHGAWVDATTRSKATPLHLAVQAGQLDAIRLLVSRRADLEAQDWFGKTALH 165
            LQLIE GA +  +   + T LHLA +AG LDA+R+L+SR   +  QD  G T LH
Sbjct:  972 LQLIEKGADISKSNNKRQTCLHLACEAGNLDAVRILLSRGCSITLQDIHGSTPLH 1026
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BLAST of mRNA_L-elsbetiae_contig13025.2399.1 vs. uniprot
Match: A0A1D2ML26_ORCCI (Ankyrin-3 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2ML26_ORCCI)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-6
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   13 EHGAWVDATTRSKATPLHLAVQAGQLDAIRLLVSRRADLEAQD 141
            EHGA+VDA T  K TPLHLA + GQL+  RLL+  RA+ +A D
Sbjct:  148 EHGAYVDALTLKKQTPLHLAAETGQLEVCRLLIGLRANPDAAD 190
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BLAST of mRNA_L-elsbetiae_contig13025.2399.1 vs. uniprot
Match: A0A8K0DBX2_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DBX2_9COLE)

HSP 1 Score: 50.4 bits (119), Expect = 9.360e-6
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   25 WVDATTRSKATPLHLAVQAGQLDAIRLLVSRRADLEAQDWFGKTALH 165
            +++  T  + TPL LA Q G LDA+RLL+S+ A++EA+D  G TALH
Sbjct:  970 FLELQTAKQETPLILAAQGGSLDAVRLLLSKNANIEAKDCNGMTALH 1016
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BLAST of mRNA_L-elsbetiae_contig13025.2399.1 vs. uniprot
Match: A0A5J4Y3D8_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3D8_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 1.740e-5
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 LQLIEHGAWVDATTRSKATPLHLAVQAGQLDAIRLLVSRRADLEAQDWFGKTALH 165
            ++L+++GA + +   +  TPLHLA   G++DA+ +L+++RAD   QD  G T LH
Sbjct:   58 VELLKYGADIASRDNNDRTPLHLAAYVGRIDAVTMLLTKRADANVQDAKGWTPLH 112
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BLAST of mRNA_L-elsbetiae_contig13025.2399.1 vs. uniprot
Match: A0A8H4C7K3_COLGL (Uncharacterized protein n=1 Tax=Colletotrichum gloeosporioides TaxID=474922 RepID=A0A8H4C7K3_COLGL)

HSP 1 Score: 49.3 bits (116), Expect = 2.380e-5
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   13 EHGAWVDATTRSKATPLHLAVQAGQLDAIRLLVSRRADLEAQDWFGKTALH 165
            E+   +D TT    T LH+A   GQ D+I LLVSR A+++AQD  G TALH
Sbjct:   98 EYAIDLDITTSDGTTALHIATLLGQHDSITLLVSRGANIDAQDHHGFTALH 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13025.2399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B8ME45_TALSN4.080e-749.09Ankyrin, putative n=1 Tax=Talaromyces stipitatus (... [more]
A0A1D2ML26_ORCCI1.040e-658.14Ankyrin-3 n=1 Tax=Orchesella cincta TaxID=48709 Re... [more]
A0A8K0DBX2_9COLE9.360e-651.06Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A5J4Y3D8_9CHLO1.740e-540.00Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A8H4C7K3_COLGL2.380e-550.98Uncharacterized protein n=1 Tax=Colletotrichum glo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13025contigL-elsbetiae_contig13025:4103..4267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.3945854-CDS-L-elsbetiae_contig13025:4102..42671622815485.3945854-CDS-L-elsbetiae_contig13025:4102..4267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13025 4103..4267 +
1691682921.1624014-CDS-L-elsbetiae_contig13025:4102..42671691682921.1624014-CDS-L-elsbetiae_contig13025:4102..4267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13025 4103..4267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13025.2399.1prot_L-elsbetiae_contig13025.2399.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13025 4103..4267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13025.2399.1

>prot_L-elsbetiae_contig13025.2399.1 ID=prot_L-elsbetiae_contig13025.2399.1|Name=mRNA_L-elsbetiae_contig13025.2399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
LQLIEHGAWVDATTRSKATPLHLAVQAGQLDAIRLLVSRRADLEAQDWFG
KTALH
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mRNA from alignment at L-elsbetiae_contig13025:4103..4267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13025.2399.1 ID=mRNA_L-elsbetiae_contig13025.2399.1|Name=mRNA_L-elsbetiae_contig13025.2399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig13025:4103..4267+ (Laminarionema elsbetiae ELsaHSoW15)
CTACAGCTTATCGAGCACGGGGCGTGGGTTGATGCTACTACTCGCTCAAA
AGCAACGCCTCTGCACCTGGCGGTGCAGGCCGGCCAACTCGACGCCATCC
GCTTGCTGGTGTCGAGGCGCGCAGACCTCGAGGCGCAGGACTGGTTCGGC
AAGACGGCCTTGCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13025:4103..4267+

>mRNA_L-elsbetiae_contig13025.2399.1 ID=mRNA_L-elsbetiae_contig13025.2399.1|Name=mRNA_L-elsbetiae_contig13025.2399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig13025:4103..4267+ (Laminarionema elsbetiae ELsaHSoW15)
CTACAGCTTATCGAGCACGGGGCGTGGGTTGATGCTACTACTCGCTCAAA
AGCAACGCCTCTGCACCTGGCGGTGCAGGCCGGCCAACTCGACGCCATCC
GCTTGCTGGTGTCGAGGCGCGCAGACCTCGAGGCGCAGGACTGGTTCGGC
AAGACGGCCTTGCATCTACAGCTTATCGAGCACGGGGCGTGGGTTGATGC
TACTACTCGCTCAAAAGCAACGCCTCTGCACCTGGCGGTGCAGGCCGGCC
AACTCGACGCCATCCGCTTGCTGGTGTCGAGGCGCGCAGACCTCGAGGCG
CAGGACTGGTTCGGCAAGACGGCCTTGCAT
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