mRNA_L-elsbetiae_contig13017.2395.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13017.2395.1
Unique NamemRNA_L-elsbetiae_contig13017.2395.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 5.100e-103
Identity = 178/228 (78.07%), Postives = 187/228 (82.02%), Query Frame = 1
Query:    1 QVLVPHLGSLTGGHTTPDVTGKPLKGVMFDLSHLGVSCQDNLDLVDLPSSYTELYGLAKSPHASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQVGECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            QVL+PHLGSLTGGHTTPD+TGKPLKGV+FDLSHLGVSCQDN DLV+LP SYTELYGLAKSPHASAAAAEGAA G ETDPAVCLVCGQVLAAG+K   +G VGECTLHARECG GVGVFFLVQRR                              CVVLLIRDSRGAYY SIYLDDHGEEDAQL+RGRPLFLNKHRYD+LKQLYLRH+VA EVSAIRASSDRVIRENYY
Sbjct: 1654 QVLMPHLGSLTGGHTTPDLTGKPLKGVVFDLSHLGVSCQDNHDLVELPESYTELYGLAKSPHASAAAAEGAAAGLETDPAVCLVCGQVLAAGAK--GMGHVGECTLHARECGAGVGVFFLVQRRVESPW-------------------------CVVLLIRDSRGAYYPSIYLDDHGEEDAQLRRGRPLFLNKHRYDSLKQLYLRHKVAQEVSAIRASSDRVIRENYY 1854          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: D7FRC8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC8_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 4.070e-102
Identity = 171/240 (71.25%), Postives = 186/240 (77.50%), Query Frame = 1
Query:    1 QVLVPHLGSLTGGHTTPDVTGKPLKGVMFDLSHLGVSCQDNLDLVDLPSSYTELYGLAKSPHASAAAA-EGAATGHETDPAVCLVCGQVLAAGSKMSALGQVGECTLHARECGGGVGVF------FLVQRRTRXXXXXXXDET------RTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENY 681
            QV++PHLGSLTGGHTTPD+TGKPLKGV+FDLS LGVSCQDN DLV+LP SYTELYGLA++PHASAAAA EGAA G ETDPAVCLV GQVLAAG K   +G VGECTLHARECG GVG        FLVQRR          E         T G  P  ++   +  CVVLLIRDSRGAYY SIYLDDHGEEDAQL+ GRPLFLNKHRYD+L+QLYLRH+VA EV AIRASSDRVIRENY
Sbjct:   18 QVVMPHLGSLTGGHTTPDLTGKPLKGVVFDLSRLGVSCQDNDDLVELPRSYTELYGLARNPHASAAAAAEGAAAGLETDPAVCLVFGQVLAAGEK--GMGHVGECTLHARECGAGVGASAGVGASFLVQRRVESPWFGFRRERTGYRRHEQTTG--PRDSLCSIYDGCVVLLIRDSRGAYYPSIYLDDHGEEDAQLRHGRPLFLNKHRYDSLRQLYLRHKVAQEVLAIRASSDRVIRENY 253          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 4.240e-58
Identity = 105/124 (84.68%), Postives = 112/124 (90.32%), Query Frame = 1
Query:    1 QVLVPHLGSLTGGHTTPDVTGKPLKGVMFDLSHLGVSCQDNLDLVDLPSSYTELYGLAKSPHASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQVGECTLHARECGGGVGVFFLVQRR 372
            QVL+PHLGSLTGGHTTPD+TGKPLKGV+FD+SHLGVSCQDN DLV+LP SYTELYGLAKSPHASAAAAEGAA G E D AVCLVCGQVL AG+K   +G VGECTLHARECG GVGVFFLVQRR
Sbjct: 2648 QVLMPHLGSLTGGHTTPDLTGKPLKGVVFDISHLGVSCQDNHDLVELPESYTELYGLAKSPHASAAAAEGAAAGPERDRAVCLVCGQVLVAGAK--GMGHVGECTLHARECGAGVGVFFLVQRR 2769          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.670e-46
Identity = 106/233 (45.49%), Postives = 132/233 (56.65%), Query Frame = 1
Query:    7 LVPHLGSLTGGHTTPDVTGKPLKGVMFDLSHLGVSCQDNLDLVDLPSSYTELYGLAKSPHASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQV-------GECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            L+P LG+  GG  T  +TG+      +DLSH   +      LV LP  +TELY   K P+ + A A+        DPAVCL+CG+VLAA  K++A G         G CT HAR CGG VGVFFLVQR                               C VLL R  R AY+ S+YLD+HGEED  L+RGRPL+L++ RY AL+  Y +HR+A EV+AIRASSDRVIREN+Y
Sbjct: 2327 LLPFLGTAAGGVPTQAITGRRAASCAYDLSHGAPAAWHAPRLVALPRLFTELYARVKGPYTALAHAD-------FDPAVCLLCGRVLAAAHKLAAPGXXXXXXXAEGACTAHARACGGDVGVFFLVQR-------------------------------CQVLLARGGRAAYWASLYLDEHGEEDVGLRRGRPLYLSEQRYGALRLAYAQHRIAQEVTAIRASSDRVIRENFY 2521          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A7S0C9S2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9S2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.090e-34
Identity = 87/223 (39.01%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   37 GHTTPDVTGKPLKGVMFDLSHLGVSCQDN---LDLVDLPSSYTELYGLAKSPHASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSAL----GQVGECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            G++   +TG  L   M+D+SHLG+        +DL+ LP S+ ELYGL                G ET  A+CL+ G V+ +GS   +L       G CT+HAR+ G G+GVFFLVQ+                               C VLL+ +++ AY  S+Y+D+HGEED  L+RGRPLFL K RY++LK L+ +H +  EV+ IR++SDRVIR+N+Y
Sbjct:  286 GYSLDQITGSRL---MYDMSHLGLVHNVGTVGIDLIQLPESFVELYGLVNRVKGEVTDESDDYNGSET--AICLLTGSVMRSGSLRRSLITPSRPHGSCTVHARKVGSGIGVFFLVQK-------------------------------CTVLLMHNNKSAYSASLYVDEHGEEDPGLRRGRPLFLKKTRYESLKFLWRQHGIPREVAQIRSTSDRVIRDNWY 472          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A7S1GNK1_CYCTE (E3 ubiquitin-protein ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNK1_CYCTE)

HSP 1 Score: 135 bits (341), Expect = 4.830e-34
Identity = 93/241 (38.59%), Postives = 129/241 (53.53%), Query Frame = 1
Query:    7 LVPHLGSLTGGHTT-PDVTGKPLK-----GVMFDLSHLG-VSCQD--NLDLVDLPSSYTELYGLAKSPHA--SAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQV----GECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            ++P+  SL G     P   G P +      VM DLSHLG + C+D     LV LP S+ ELY L        S AA +    G  T+ A+CL+ G V+ +G+   +  +     G CTLHAR+ G G+GVFFLVQ+                               C VLL+ +++ AY  S+Y+D HGEED  L+RGRPLFLN+ RY AL+ L+ +  +  EV+ IR++SDRVIR+N+Y
Sbjct:  229 IIPYQPSLLGIEDIGPGTRGAPFEVQSASSVMCDLSHLGMIHCKDVPTKCLVRLPKSFVELYSLVNKVKGRDSFAAVDDTDDGGSTETAICLLTGAVMRSGAPRRSYNRATRPAGACTLHARQVGSGIGVFFLVQK-------------------------------CTVLLMHNNKSAYSPSLYVDQHGEEDPGLRRGRPLFLNEARYRALETLWRQQGIPREVAQIRSTSDRVIRDNWY 438          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A7S4ACA5_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACA5_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.060e-30
Identity = 84/211 (39.81%), Postives = 118/211 (55.92%), Query Frame = 1
Query:   79 VMFDLSHLG-VSCQDN--LDLVDLPSSYTELYGLAKSPHA--SAAAAEGAATGHETDPAVCLVCGQVLAAG----SKMSALGQVGECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            VM DLSHLG V C+D     L+ LP S+ ELYG+         +A+ E +  G   + A+CL+ G V+ +G    S   +    G CT+HARE G G+G+FFLVQ+                               C VLL+ +++ AY  S+Y+D+HGEED  L+RGRPLFLN  R  AL+QL+ +  +  EV+ IR++SDRVIR+N+Y
Sbjct: 1661 VMSDLSHLGLVHCKDTPTFSLIRLPKSFVELYGIVGKVKGREESASLEDSDDGGNAETAICLLTGTVMRSGLARRSYHRSQRPPGACTVHARENGCGIGIFFLVQK-------------------------------CTVLLMHNNKSAYSASLYVDEHGEEDPGLRRGRPLFLNDARLRALEQLWRQQGIPREVAQIRSTSDRVIRDNWY 1840          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A7S3YGE2_HETAK (E3 ubiquitin-protein ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGE2_HETAK)

HSP 1 Score: 107 bits (268), Expect = 9.880e-26
Identity = 76/207 (36.71%), Postives = 104/207 (50.24%), Query Frame = 1
Query:   70 LKGVMFDLSHLGVSCQDN-LDLVDLPSSYTELYGLAKSP-HASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQVGECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            L+  + D SHL    +     LV LP  +TELY   K P HA +          + DPA+CL+CG+V+AAG+ +   G  G+CT HA  CG G G F L QR                                 VLL+R S+ AY    Y+D+HGE D  L+RG+PL L + RY  L+ L+LR  V  EV+ +R  + R+IR++YY
Sbjct:    8 LRRRLADRSHLPQLARGRRAGLVPLPRDFTELYARVKDPFHAWSVP--------DFDPALCLLCGEVVAAGNHV---GPQGDCTRHAARCGAGCGAFLLAQRGC-------------------------------VLLLRGSKAAYAPGPYVDEHGEHDPGLRRGKPLALCEARYAELEGLWLRGGVGQEVARLRGQAARIIRDDYY 172          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.060e-23
Identity = 74/218 (33.94%), Postives = 104/218 (47.71%), Query Frame = 1
Query:   13 PHLGSLTGGHTTPDVTGK-----PLKGV------MFDLSHLGVSCQDNLDLVDLPSSYTELYGLAKSPHASAAAAEGAATGHETD---------------PAVCLVCGQVLAAGSKMSA---LGQVGECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNK 579
            P+  SL G  T P +        PL+ +      ++DLSH GVS   +L LV LP  YT+LY L K  + + A++   A+G   D               PA+CL+CG +LAAG +M     +G  G CTLHAR CG G G+  L+ + +                               +LL RD+R  +Y S Y+D +GEED  L+RGRPL L++
Sbjct: 2245 PYFPSLDGTFTMPGMDADSPRPGPLQNLAQEDLPLYDLSHFGVSDDVDLRLVPLPEHYTQLYSLLKDQYWTVASSTSHASGDRIDGGSAGAGEVRRGIEDPALCLLCGAILAAGPRMQGGTHIGSPGVCTLHARACGSGTGLMLLINKGS-------------------------------ILLFRDNRATFYPSPYVDQYGEEDPNLRRGRPLSLSE 2431          
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Match: A0A1E7FSF3_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSF3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.280e-22
Identity = 71/208 (34.13%), Postives = 108/208 (51.92%), Query Frame = 1
Query:   79 VMFDLSHLGVSCQDN---LDLVDLPSSYTELYGLA---KSPHASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQVGECTLHARECGGGVGVFFLVQRRTRXXXXXXXDETRTTAGGFPVLNISERFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALKQLYLRHRVAHEVSAIRASSDRVIRENYY 684
            VM DLSHLG+  + +     L+ LP S+ ELYG+    K    S A  +    G+ ++ A+CL+ G V+ +GS                              R++          R T  G  +  + ++   C VLL+ +++ AY  S+Y+D+HGEED  L+RGRPLFLN  R  AL+QL+ +  +  EV+ IR++SDRVIR+N+Y
Sbjct:  113 VMSDLSHLGLIHRKDTPTFSLIRLPKSFVELYGIVSKVKGREESTALDDSDDVGN-SETAICLLTGTVMRSGSTRRPY------------------------HRSQRPPGACTLHARKTGSGIGIFFLVQK---CTVLLMHNNKSAYSASLYVDEHGEEDPSLRRGRPLFLNDARLRALEQLWRQQGIPREVAQIRSTSDRVIRDNWY 292          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13017.2395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D4_ECTSI5.100e-10378.07E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
D7FRC8_ECTSI4.070e-10271.25E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5K8R4_9PHAE4.240e-5884.68E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A836CB31_9STRA3.670e-4645.49E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
A0A7S0C9S2_9STRA2.090e-3439.01E3 ubiquitin-protein ligase n=1 Tax=Proboscia iner... [more]
A0A7S1GNK1_CYCTE4.830e-3438.59E3 ubiquitin-protein ligase n=1 Tax=Cyclophora ten... [more]
A0A7S4ACA5_9STRA3.060e-3039.81E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]
A0A7S3YGE2_HETAK9.880e-2636.71E3 ubiquitin-protein ligase n=1 Tax=Heterosigma ak... [more]
A0A4D9D1X7_9STRA5.060e-2333.94E3 ubiquitin-protein ligase n=6 Tax=Monodopsidacea... [more]
A0A1E7FSF3_9STRA6.280e-2234.13E3 ubiquitin-protein ligase n=1 Tax=Fragilariopsis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13017contigL-elsbetiae_contig13017:914..5016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.4
Seed ortholog evalue1.6e-91
Seed eggNOG ortholog2880.D7G3D4
KEGG koko:K10625,ko:K10626,ko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002440.1
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons6
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13017.2395.1prot_L-elsbetiae_contig13017.2395.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13017 914..5016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.955785-CDS-L-elsbetiae_contig13017:913..10561622815484.955785-CDS-L-elsbetiae_contig13017:913..1056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 914..1056 -
1691682920.857204-CDS-L-elsbetiae_contig13017:913..10561691682920.857204-CDS-L-elsbetiae_contig13017:913..1056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 914..1056 -
1622815484.9687073-CDS-L-elsbetiae_contig13017:2147..22301622815484.9687073-CDS-L-elsbetiae_contig13017:2147..2230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 2148..2230 -
1691682920.8864317-CDS-L-elsbetiae_contig13017:2147..22301691682920.8864317-CDS-L-elsbetiae_contig13017:2147..2230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 2148..2230 -
1622815484.9812627-CDS-L-elsbetiae_contig13017:2268..23611622815484.9812627-CDS-L-elsbetiae_contig13017:2268..2361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 2269..2361 -
1691682920.9096189-CDS-L-elsbetiae_contig13017:2268..23611691682920.9096189-CDS-L-elsbetiae_contig13017:2268..2361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 2269..2361 -
1622815484.9949167-CDS-L-elsbetiae_contig13017:2456..25631622815484.9949167-CDS-L-elsbetiae_contig13017:2456..2563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 2457..2563 -
1691682920.918877-CDS-L-elsbetiae_contig13017:2456..25631691682920.918877-CDS-L-elsbetiae_contig13017:2456..2563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 2457..2563 -
1622815485.010477-CDS-L-elsbetiae_contig13017:3440..35841622815485.010477-CDS-L-elsbetiae_contig13017:3440..3584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 3441..3584 -
1691682920.9271564-CDS-L-elsbetiae_contig13017:3440..35841691682920.9271564-CDS-L-elsbetiae_contig13017:3440..3584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 3441..3584 -
1622815485.0232234-CDS-L-elsbetiae_contig13017:4899..50161622815485.0232234-CDS-L-elsbetiae_contig13017:4899..5016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 4900..5016 -
1691682920.9386265-CDS-L-elsbetiae_contig13017:4899..50161691682920.9386265-CDS-L-elsbetiae_contig13017:4899..5016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13017 4900..5016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13017.2395.1

>prot_L-elsbetiae_contig13017.2395.1 ID=prot_L-elsbetiae_contig13017.2395.1|Name=mRNA_L-elsbetiae_contig13017.2395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
QVLVPHLGSLTGGHTTPDVTGKPLKGVMFDLSHLGVSCQDNLDLVDLPSS
YTELYGLAKSPHASAAAAEGAATGHETDPAVCLVCGQVLAAGSKMSALGQ
VGECTLHARECGGGVGVFFLVQRRTRERERERQDETRTTAGGFPVLNISE
RFSVCVVLLIRDSRGAYYQSIYLDDHGEEDAQLKRGRPLFLNKHRYDALK
QLYLRHRVAHEVSAIRASSDRVIRENYY*
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mRNA from alignment at L-elsbetiae_contig13017:914..5016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13017.2395.1 ID=mRNA_L-elsbetiae_contig13017.2395.1|Name=mRNA_L-elsbetiae_contig13017.2395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4103bp|location=Sequence derived from alignment at L-elsbetiae_contig13017:914..5016- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCTTGGTACCGCATCTCGGCAGCCTGACCGGTGGACACACTACGCC GGACGTCACGGGCAAGCCACTCAAGGGGGTTATGTTCGACCTCAGCCACC TCGGCGTCAGCTGCCAGGTGTGTGTGATTCACGGAACCCCCGTGCGTGTG TGTGTGTGTTTTTTTTTTTTTTTTTAAGAAATATATTACCACTTTATAAA TCTCCTATCATTCTTGCCACTTTATAAATTCCCCATCATTCCAGAAAAGG ATGGGGGATTATATATATAGGGGTGTTTCACAAAGTATTTTGCTTTTTAA TTTTTTGGGTTAAATTGGCAAGAGAAAATATCAGAGAAATCAAAGAAATG AACCCCACAACGCGTTGCAGCTGGTACAAAACGGAAAAAAAAAACGTACC AAATGTTGAAAGGGTGTACCCCCACGAATCCCCGTCACCCCCTTGCACTG CAATGCGTGTGACTCCCCCAGCATCAGAGGCGGGCCTCCGCGGCGAATTC AGTATGCAGTAGCAGCAGTGCTACTGATGTTGTATTGATGGGTCCGGCCG AGGGTCTTTGTTTTGCCGATATTTTCCGGGACAAATTTTTAAGGAATGGC TGATGCTGTCCGTCTTGTTGCGTCGGATGTTGTCGTACATTTGCATCGGC TTCTTGCATACGTCCGTCCGTACGTAAATATCCGACGCCGGGGTGCTGTT TTCTCCTTTTGCTGTTTCTCACACTAGCTCTCTACATTGTCCAAAAACAT CCTTGGGGGCCCGAGGTCACTAAACAGGGCACACTCGACGCCCCTCAAGA AAGAAATAAAACAAAGTATGGTACATACGCGCCCGGCGGTACTAAACTGA GCCCCGAGGGGATCTTGCGTCTCGCTGTACCCCCCCGCAAATGTAGCGTG TATGTAGAGGGGAGCGGAGGGCTTTTATCAGTATCTGTGTCTGATATTTT GTTTTTGTGTTTTGTGGACCCGTTCGGGGAGGGCCAATTCGTTACTTTTG TTTTCAGTATACCCTGTTTAGGGTCCTGTGACCATGGGAATCGATTGCGT CAGTGTTGGATTAGTACGGACTCATCATGGAGGTACTGGATAGAGAGATC GGGACGTTTTTTCATGTCAAGACAACGACAATAACAACAACCCTCCGATA AAAAAACAGCGAAGAATGCCCGACTTTCAAGCTAAGCACACACCCGTGTA TGTCTGTCTGTCCGTTTGATGTAAATGTTTGTTGTTTGTCGCCGCTGAGC AGACAGACGTCTTATCGCGGCGGCGTCCTTTTCTGGGTAGTGTTCTCTTC GCGGGCTGCGTGCGTGAAGCACAACTACTTGGTATTATATTATACCTAAC CTGGAGCTGCACAGGACTCTTCTCTAACTCTTGGGTCGGCGAATGTCCTG TTCTCTTTCTTCTGTTCTGTTTTATTTTTCAGGACAATCTCGACCTTGTG GACCTGCCCTCGAGCTACACGGAGCTGTACGGCTTGGCCAAAAGCCCCCA TGCGTCGGCGGCGGCGGCGGAGGGGGCGGCGACCGGCCACGAGACCGACC CGGCGGTGTGCCTTGTTTGCGGGCAGGTGGGTCGGTGGTAGTGGTGTGGT TTCGGTGGTCGTCGTGGTGGTGGTCGTCGTGGTGGTGGTCGTGGTGGTAG TGTTGTTAGTTGTTAGTGCTGTTGGTTTGCGGGCAGGTGGGTCGGTGGTA GTGGTGTGGTTTTGGTGTTCGTGGTGTAGTGTTGTTAGTTGTTAATGCTG TTGGTGCTGCTGTTGTTGTTGCTGTTGTTGTTGCTGTCGCTGTTGCTGCT ATTGCTGATGCACTTGGGGGTGTAGCCGGTACGCGTGGCGGATGCACAAG CGCCGCACCATCACGGTGCCGTTTCTCTAGTGTGCGAACAATCGGGCATG ACGGCCGAGCGCCGTTGTTGCCTCTTTTAACCTCGCGGCAGCTGTGTTTC TGCCTCCCCGCTGATCGGGTCTTGTGGATGTCTTGCTATAGATCGAACTA ACTCATGCAACTGTTGAGCTTGTTTCGTGAAAACTTAATCCATGCGGGAC AATACATGCGGGACGGGACAAACAATGCGGGGAGGGGGCACAGCATGCGG AAAAACACAAAGAAAAAACACACCAGTCGCTCTACACGAGGCGTTCTCTC AGGCGGGAGGGGAGCAGCAGCAGCAGCAGCAGCATTTTTTGGCCAATTTT TTTAGCGCTGGTGGCAATTAATTATCGCCGAGTGTGAACACGTCAGTAGC CTCCGCAGGTTCTACTGGAATAAATCATATGGGATAAAATATGGAAATGG CTAATGGGGGGTCGGGGTAGGGTTAGGTTTAGGGTTACGGAACCCCCTGT CTAATAATTTACGAAGTATATGCACACAACCATAGACAGGAATTTTTCGC GAAGGGGGTCCGAACGCGTGTGTATTGGTGTGTTCCTGTATCTTGTGCTT CAGGTTCTCGCGGCGGGGTCGAAGATGTCGGCCCTGGGGCAGGTAGGCGA GTGCACCCTGCACGCCAGAGAGTGCGGCGGCGGCGTCGGGGTCTTCTTCC TTGTGCAGCGGTGAGTGGATTCATCGGGCGAGAGAACAAGGAAATTGATG GATGGGTTGTTGAAAGTTAGAGGGATTTGGGTGACTGATGGATGTGTTAA TAGAGTAGAACTAGAGAGAGAGAGAGAGAGAGACAAGATGAGACGAGAAC AACAGCTGGCGGATTCCCGGTGTTGAATATTTCGGAACGATTCTCTGTGT TTCCATTTCTTGTGTTTAATTATTGTCCGCTGTCAGGTGCGTGGTGCTGC TGATTCGAGACAGCAGGGGGGCTTACTACCAGTCCATCTACCTCGACGAC CATGGAGAGGAGGACGCACGTGAGTAAATAACTGCCTTTGCCCTTAGGAG GGGGCAGAGGTTGGGTTAGCATTAAGTTTTGGGGTGTGAACAATGGTAAC AAATACAGTGTGCCTACCGTGGGTGGCACAAGACACCACTCCCCCCGTGG ACATATTCTCAAAGCTCAGTGACTCCGTAACGAAGAGGGTTCGCGGCGTT TCTCGCGAGAACTATATCTCCAGATCTCTGAAACGACACTGTATTTCCGG CCAGACTGGGACATGTTTTCGTCGTTGGCCTTCTTATTCTTCTTCTCGCA CTTCTGTATGTGCTTCCTTCCTGGGTCGCTTTTGGTGGCCTTGCGCTTTG TTGTCTTTTGTCGTCTACGCCTGTCCACTTTTTGAAGCCGGGCTCGCCAC AGGCATTTCTTGAAAATTGAAGAGAAGTTGCGAAATCGAAAGAAAAAACC TCCGCACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCG GGGGGGGGGGGCCCCGCGGGGAATTCACCGATAAAAACAGGAGCGGTGTG AAATTGGTTCTCCTTCTATCCTTCCCCCACCCTTGNNNNNNNNNCGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGAGGGGGCTCCGCGGTGAATTCACAGTTAAATACAGTAGCGCTGTAA TATTGATTATTCTTCTATCCTTCCTTCACCATTGAGCTTGTCGTCATGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCCACTTCCTGCGCGCGGT TTTGTGGCTGGTGCCTTCTCTGCCGGCTTTGTTTTGGGGTGCCTTGATGG TTCACTCTTTTTTCGCCTTGTCACCACGCCAATTTTCTGTGTATTTAATA ACTCCGTAAACCCGGCACTCTTTCTGGCGTCATCCGCTCAGCGGAGCATC GCCCAACGCCTGCACTGCGCTGCTGGTTCAGCACAAGCAACACTTCAGCT CTACAGTACCACCCACCAGCTTCATTGATCCCTGTTTTCGCCCCGTTCCG TGCGCTGTGTGCTTGCTTGCTTGCGCGCTCGCGTTTCACGTCTTCTTGGC GGCCCCGCAGAGCTGAAGCGCGGGCGGCCTCTGTTCCTGAACAAGCACCG GTACGACGCCCTGAAGCAGCTGTACCTCAGACACCGAGTCGCCCACGAGG TTTCGGCCATCCGTGCTAGCTCGGACCGCGTTATTAGGGAGAACTACTAC TAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13017:914..5016-

>mRNA_L-elsbetiae_contig13017.2395.1 ID=mRNA_L-elsbetiae_contig13017.2395.1|Name=mRNA_L-elsbetiae_contig13017.2395.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig13017:914..5016- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCTTGGTACCGCATCTCGGCAGCCTGACCGGTGGACACACTACGCC
GGACGTCACGGGCAAGCCACTCAAGGGGGTTATGTTCGACCTCAGCCACC
TCGGCGTCAGCTGCCAGCAGGTCTTGGTACCGCATCTCGGCAGCCTGACC
GGTGGACACACTACGCCGGACGTCACGGGCAAGCCACTCAAGGGGGTTAT
GTTCGACCTCAGCCACCTCGGCGTCAGCTGCCAGGACAATCTCGACCTTG
TGGACCTGCCCTCGAGCTACACGGAGCTGTACGGCTTGGCCAAAAGCCCC
CATGCGTCGGCGGCGGCGGCGGAGGGGGCGGCGACCGGCCACGAGACCGA
CCCGGCGGTGTGCCTTGTTTGCGGGCAGGACAATCTCGACCTTGTGGACC
TGCCCTCGAGCTACACGGAGCTGTACGGCTTGGCCAAAAGCCCCCATGCG
TCGGCGGCGGCGGCGGAGGGGGCGGCGACCGGCCACGAGACCGACCCGGC
GGTGTGCCTTGTTTGCGGGCAGGTTCTCGCGGCGGGGTCGAAGATGTCGG
CCCTGGGGCAGGTAGGCGAGTGCACCCTGCACGCCAGAGAGTGCGGCGGC
GGCGTCGGGGTCTTCTTCCTTGTGCAGCGGTTCTCGCGGCGGGGTCGAAG
ATGTCGGCCCTGGGGCAGGTAGGCGAGTGCACCCTGCACGCCAGAGAGTG
CGGCGGCGGCGTCGGGGTCTTCTTCCTTGTGCAGCGTAGAACTAGAGAGA
GAGAGAGAGAGAGACAAGATGAGACGAGAACAACAGCTGGCGGATTCCCG
GTGTTGAATATTTCGGAACGATTCTCTGTTAGAACTAGAGAGAGAGAGAG
AGAGAGACAAGATGAGACGAGAACAACAGCTGGCGGATTCCCGGTGTTGA
ATATTTCGGAACGATTCTCTGTGTGCGTGGTGCTGCTGATTCGAGACAGC
AGGGGGGCTTACTACCAGTCCATCTACCTCGACGACCATGGAGAGGAGGA
CGCACGTGCGTGGTGCTGCTGATTCGAGACAGCAGGGGGGCTTACTACCA
GTCCATCTACCTCGACGACCATGGAGAGGAGGACGCACAGCTGAAGCGCG
GGCGGCCTCTGTTCCTGAACAAGCACCGGTACGACGCCCTGAAGCAGCTG
TACCTCAGACACCGAGTCGCCCACGAGGTTTCGGCCATCCGTGCTAGCTC
GGACCGCGTTATTAGGGAGAACTACTACTAGAGCTGAAGCGCGGGCGGCC
TCTGTTCCTGAACAAGCACCGGTACGACGCCCTGAAGCAGCTGTACCTCA
GACACCGAGTCGCCCACGAGGTTTCGGCCATCCGTGCTAGCTCGGACCGC
GTTATTAGGGAGAACTACTACTAG
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