mRNA_L-elsbetiae_contig13015.2394.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13015.2394.1
Unique NamemRNA_L-elsbetiae_contig13015.2394.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 7.230e-48
Identity = 82/111 (73.87%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGVPAFLAS 333
            KYLHLVFARSVGAQKVVDA TAVKGV +DVLD+FSSL ++ VG SI + ESVTLGWEGKD++VVLVRDK  G+V+D +LP +VF+L+LG  PVSP AK +FAEGVPAFLAS
Sbjct:  119 KYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 9.150e-46
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGVPAFLAS 333
            KYLHLVFARSVGAQKVVDA TAVKGV +DVLD+FSSL ++ VG SI + ESVTLGWEGKD++VVLVRDK  G+++D ALP +VF L+LG  PVSP AK +FAEGVP FLAS
Sbjct:  237 KYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE)

HSP 1 Score: 106 bits (265), Expect = 2.480e-26
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGV 315
            K +HL FARSVGA K+V+ALT++ GV ++ L +FS L+LD++G+SIG  E+VTL     D + V+VR K AG+V D+ LPKA FDLYLG +PVS  AK +FA  V
Sbjct:  121 KAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFASRV 225          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.280e-26
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVF------------------------DLYLGPSPVSPAAKASFAEGVPAFL 327
            +YL L FAR V A KV DALTAV+GV  DVL  F+ L+  A+G ++  G+++ LGWEGKD++VV+VR K AG V DAALP A+F                         LYLG  PVSP AKA+FA GV A  
Sbjct:  298 RYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSAIF 430          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A7S1JL13_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JL13_9ALVE)

HSP 1 Score: 102 bits (255), Expect = 1.170e-25
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGV 315
            K + L FAR+VGA KV DAL+AVKGV  +V+  F SL+   +GASI K E++ +GW    ++ VL+R + AGTVVDA LPKA F+LYLG +PVS  AK +F + V
Sbjct:   38 KLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRV 142          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC)

HSP 1 Score: 102 bits (255), Expect = 4.760e-25
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGV 315
            K + L FAR+VGA KV DAL+AVKGV  +V+  F SL+   +GASI K E++ +GW    ++ VL+R + AGTVVDA LPKA F+LYLG +PVS  AK +F + V
Sbjct:   93 KLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRV 197          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A6S9GES1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GES1_HETAK)

HSP 1 Score: 105 bits (263), Expect = 4.820e-25
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGV 315
            K ++L FAR VG+QK++DALTAV+GV    LD FS+L+L A+G  IG  E++ LG++    M V VR+  AGTV DA L  AVF LYLG SPVS  AK +F  GV
Sbjct:  242 KVMYLKFARGVGSQKIIDALTAVEGVPAATLDEFSALLLGAMGGQIGASETIALGFDASGSMSVYVREALAGTVADATLAPAVFKLYLGASPVSQPAKDAFGAGV 346          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: W7TMS0_9STRA (Chalcone isomerase-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.610e-18
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    7 LHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGVPAFL 327
            L+L+FAR+V A K+V+AL AV GV K+V+  F   +L A+G+S+ + E++TL W   D++ + VRDK   T     L + +F+LYLG  P+SP AK  FA   P  +
Sbjct:  492 LYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAPQHI 598          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.040e-18
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGK-GESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKASFAEGV 315
            +Y+ L F R V   KV DALTAV+GV   ++D +  L+  A+G    + G+++ LG+EGKD++VV+   K  G V    LP AVF LYLG  P+ PAAK + A+GV
Sbjct:  240 RYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGV 345          
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.010e-17
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGESVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFD 255
            K +++ +AR+VG  KVVDAL  V       LD F  L++   G++IG  E++TLGWEGKDK+VV VRDK  GTV  A L +AVF+
Sbjct:  119 KAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVFE 203          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13015.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G2G9_ECTSI7.230e-4873.87Similar to Chalcone Isomerase n=1 Tax=Ectocarpus s... [more]
A0A6H5KHX0_9PHAE9.150e-4672.97FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A0G4GWT2_9ALVE2.480e-2655.24Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A835ZLC9_9STRA6.280e-2648.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1JL13_9ALVE1.170e-2553.33Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4GUV1_VITBC4.760e-2553.33Chalcone_isomerase domain-containing protein n=2 T... [more]
A0A6S9GES1_HETAK4.820e-2554.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TMS0_9STRA4.610e-1842.99Chalcone isomerase-like protein n=2 Tax=Nannochlor... [more]
A0A835Z7E7_9STRA8.040e-1845.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UYK7_9STRA7.010e-1750.59Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13015contigL-elsbetiae_contig13015:1649..2859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-00_005930.1
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.9072251-CDS-L-elsbetiae_contig13015:1648..17461622815484.9072251-CDS-L-elsbetiae_contig13015:1648..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13015 1649..1746 +
1691682920.8346121-CDS-L-elsbetiae_contig13015:1648..17461691682920.8346121-CDS-L-elsbetiae_contig13015:1648..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13015 1649..1746 +
1622815484.9236646-CDS-L-elsbetiae_contig13015:2621..28591622815484.9236646-CDS-L-elsbetiae_contig13015:2621..2859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13015 2622..2859 +
1691682920.8444982-CDS-L-elsbetiae_contig13015:2621..28591691682920.8444982-CDS-L-elsbetiae_contig13015:2621..2859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13015 2622..2859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13015.2394.1prot_L-elsbetiae_contig13015.2394.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13015 1649..2859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13015.2394.1

>prot_L-elsbetiae_contig13015.2394.1 ID=prot_L-elsbetiae_contig13015.2394.1|Name=mRNA_L-elsbetiae_contig13015.2394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
KYLHLVFARSVGAQKVVDALTAVKGVGKDVLDRFSSLMLDAVGASIGKGE
SVTLGWEGKDKMVVLVRDKAAGTVVDAALPKAVFDLYLGPSPVSPAAKAS
FAEGVPAFLAS*
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mRNA from alignment at L-elsbetiae_contig13015:1649..2859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13015.2394.1 ID=mRNA_L-elsbetiae_contig13015.2394.1|Name=mRNA_L-elsbetiae_contig13015.2394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1211bp|location=Sequence derived from alignment at L-elsbetiae_contig13015:1649..2859+ (Laminarionema elsbetiae ELsaHSoW15)
AAGTACCTTCACCTAGTGTTCGCCAGGAGCGTCGGAGCGCAGAAGGTTGT TGACGCGCTCACTGCCGTCAAGGGCGTAGGCAAGGACGTTCTCGACAGGT GCGCGCACGCGGGGGGGTGGCGACGGTCTCTGGCTTTATTTACTGATGCG TTGTGTGTTTTCATGTTTTCATATGTCAAAGCCGAAAGCGTCCATTTGAT TTTTGCTCGAATGTTTTTTATGAGGAATTTAGATAAACTATTGTCGATCG TTTGGTGAAAAACATTTAGTCGTCGACGACACAGACAGACCGGCAGGCAG GCGGACAGGTACCGACATCATGTAGGCCGAACGCAAAGAGTGGATGTGTA TGCCGCCGCTCAGTCAAGCGGTTGAGTAAACGGTTTGGGCTTTTTGAGCA GAGCTAGTTTTTCGTCGCCGCTGTGGATCTGTCTTACCTCTACCCCACTT GCTGCAGATGCTCTGCCTATTGAGAGCTCTGAACGCACGGCAACCTTTGC AGGAGAGCATATTCGGGTCTGTTTTCGTGCCAAGAAAGTCGTGTACCAAT CGAAGATTCTGAAGTAGTCACCCACGTGTCGCATGCGAGACACGCTGCTA GGTGTGTGTACCCTATCGGTCTGCCAACGTGGCGTTCTGTCTTCAGCTAT ATTTATTAGACTGCCCTGCTTGTCCTCGCGGCCAAGTCTCCTCCCGCTGT TGGCCCATCTCGTTGGGTGTATGAATCGTTTGAAACAAACGTGCTCGAGC TGCACTTCCGTCCACACGCCCCGCCCCTACTTGGTCGCGAAACGGCAGCA GCAGCAGCAGCAGCACGCGTGCCATCTCAACATGATCATAAAATTAATGC TCGGCAGACAGCTCGTTTTTGCAAGGCTTACTTCCATAACTATGTACACA AGTGTCGCCGCAACGGCTTTTCGTTGCTCGATTCCCCCGACCCCCATCTC TCCTCCTCTCTCCTCTATTCCAGATTTTCCAGCCTGATGCTTGACGCCGT CGGTGCGAGCATCGGCAAGGGAGAGTCGGTGACGTTGGGGTGGGAAGGAA AAGACAAGATGGTGGTCTTGGTGCGCGACAAGGCGGCCGGCACCGTCGTG GACGCGGCCCTCCCGAAGGCCGTGTTCGACCTGTACTTGGGGCCCAGCCC CGTCTCTCCCGCCGCAAAGGCCTCCTTCGCAGAAGGGGTGCCCGCCTTCC TGGCGAGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13015:1649..2859+

>mRNA_L-elsbetiae_contig13015.2394.1 ID=mRNA_L-elsbetiae_contig13015.2394.1|Name=mRNA_L-elsbetiae_contig13015.2394.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig13015:1649..2859+ (Laminarionema elsbetiae ELsaHSoW15)
AAGTACCTTCACCTAGTGTTCGCCAGGAGCGTCGGAGCGCAGAAGGTTGT
TGACGCGCTCACTGCCGTCAAGGGCGTAGGCAAGGACGTTCTCGACAGAA
GTACCTTCACCTAGTGTTCGCCAGGAGCGTCGGAGCGCAGAAGGTTGTTG
ACGCGCTCACTGCCGTCAAGGGCGTAGGCAAGGACGTTCTCGACAGATTT
TCCAGCCTGATGCTTGACGCCGTCGGTGCGAGCATCGGCAAGGGAGAGTC
GGTGACGTTGGGGTGGGAAGGAAAAGACAAGATGGTGGTCTTGGTGCGCG
ACAAGGCGGCCGGCACCGTCGTGGACGCGGCCCTCCCGAAGGCCGTGTTC
GACCTGTACTTGGGGCCCAGCCCCGTCTCTCCCGCCGCAAAGGCCTCCTT
CGCAGAAGGGGTGCCCGCCTTCCTGGCGAGCTGAATTTTCCAGCCTGATG
CTTGACGCCGTCGGTGCGAGCATCGGCAAGGGAGAGTCGGTGACGTTGGG
GTGGGAAGGAAAAGACAAGATGGTGGTCTTGGTGCGCGACAAGGCGGCCG
GCACCGTCGTGGACGCGGCCCTCCCGAAGGCCGTGTTCGACCTGTACTTG
GGGCCCAGCCCCGTCTCTCCCGCCGCAAAGGCCTCCTTCGCAGAAGGGGT
GCCCGCCTTCCTGGCGAGCTGA
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