mRNA_L-elsbetiae_contig1301.2389.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1301.2389.1
Unique NamemRNA_L-elsbetiae_contig1301.2389.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-10
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  159 GKTEIVQLLLVKGADKDALDNNKRTPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEAR 521
            G  +++ L+L +GA  DALDN +R                   AAGAD+SL SG+   E+ +  AA    V +VRA + H  DV+A  S G  TALH  A  N+  AI+AL+EAGA++ AR
Sbjct:   13 GCDDMMPLILQQGAVVDALDNQRRXXXXXXXXXXXXXXXXXXXAAGADLSLRSGDN-NESALETAAINGDVDVVRAMVRHGVDVNARDSQGL-TALHAVAESNQAGAIDALVEAGAHVNAR 131          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A350QBS5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A350QBS5_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 7.270e-10
Identity = 56/143 (39.16%), Postives = 80/143 (55.94%), Query Frame = -1
Query:  102 GKTEIVQLLLVKGADKDALDNNKRTPLYVAASCGHVAAALALLAAGADVSLWS--GEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGC-TPLRHAAHRTSLEA 521
            G  E V+ LL +GAD +A   +  T L+ AA    +  A  LL AGA VS  +  G Y   T +H+A+Q  H  + R  +E  AD +A  + G  ++LH AA  +  EAI AL+E GA ++AR+     TPL  AA+R ++EA
Sbjct:   40 GDLEAVRALLQQGADPNAAQPDGLTGLHWAALNDELGIAEILLYAGATVSPVTRVGGY---TPLHLASQSGHGVVARTLLEAGADANAYTTTGV-SSLHFAAQADAAEAILALIEHGAEVDARDTFSNRTPLMFAAYRGAVEA 178          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A3B9DNZ8_9BACT (Uncharacterized protein n=8 Tax=root TaxID=1 RepID=A0A3B9DNZ8_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.760e-9
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = -1
Query:  102 EIVQLLLVKGADKDALDNNKRTPLYVAASCGHVAAALALLAAGADVSLWS--GEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGC-TPLRHAAHRTSLEA 512
            E V+ LL +GAD +A   +  T L+ AA    +  A  LL AGA VS  +  G Y   T +H+A+Q  H  + R  +E  AD +A  + G  ++LH AA  +  EAI AL+E GA ++AR+     TPL  AA+R ++EA
Sbjct:   43 EAVRALLQQGADPNAAQPDGLTGLHWAALNDELGIAEILLYAGATVSPVTRVGGY---TPLHLASQSGHGVVARTLLEAGADANAYTTTGV-SSLHFAAQADAAEAILALIEHGAEVDARDTFSNRTPLMFAAYRGAVEA 178          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: UPI001D053619 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D053619)

HSP 1 Score: 65.1 bits (157), Expect = 4.230e-9
Identity = 60/173 (34.68%), Postives = 84/173 (48.55%), Query Frame = -1
Query:   24 GKTEIVQLLLVKGADKDA----LDNNKRTPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIVRAAI-EHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGCTPLRHAAHRTSLEAV--LXXXXXXXXXXXXDSHQRTPLHWAA 521
            G TE +  LL    D D     +D++    L  AA  GH      LL  GAD     G+ +++T +H AA+G H+  + A I +  A VD   S G+ T LH A      EA+  L++ GAN+EA N  G TPL  AA   + +AV  L            ++  R+PLH+AA
Sbjct: 1105 GNTECLDALLQCLRDSDQSTEDMDSSILAALCSAARGGHAKTVQHLLRHGADAEELYGDDIQQTALHAAAEGGHIDAITALIGKGGAAVDQRSSSGD-TPLHCACA--HPEAMRLLIDMGANLEATNNNGETPLMRAASIGNGDAVKLLLQNGSDGAAYNWENACRSPLHYAA 1274          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A8C9G2H4_PAVCR (Palmitoyltransferase n=1 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9G2H4_PAVCR)

HSP 1 Score: 62.8 bits (151), Expect = 2.320e-8
Identity = 50/155 (32.26%), Postives = 77/155 (49.68%), Query Frame = -1
Query:  108 KTEIVQLLLVKGADKDALDNN-KRTPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIV-----------------RAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGCTPLRHAAHRTSL 518
            + ++V+  + KGA  D L  +   TPL+ A   GH++  + L+  GAD SL  GE    + +H+AAQ  H  IV                 R  +  +  V+      ++TALH A L      I+ LLEAGAN++A+N+ G +PL  A  R ++
Sbjct:   92 RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC--SCIHLAAQFGHTSIVAYLIAKGQVNFKYVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESPLDLAKQRKNV 244          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A167QSI4_9PEZI (Ankyrin repeat-containing domain protein n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167QSI4_9PEZI)

HSP 1 Score: 61.2 bits (147), Expect = 9.170e-8
Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  135 VQLLLVKGADKDALDNNKRTPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGCTPL 506
            V++LL  GAD   L ++    L  A    +      LL  GADV+  +G Y   ++V  A Q  H  IV   +EH A V+A       TALH+AAL  R + +  LL+A ANIEAR+  G TP+
Sbjct: 1068 VKVLLDYGADPKLLHSSDENVLQRAIVNENYEICSLLLGNGADVNDRTGGYA--SIVIAATQNNHA-IVSLLLEHGALVNATNESSGRTALHVAALSGRDDIVKTLLDAKANIEARDGAGYTPV 1188          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A6U0I3R1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A6U0I3R1_MICPS)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-7
Identity = 54/146 (36.99%), Postives = 68/146 (46.58%), Query Frame = -1
Query:   21 TPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGCTPL---RHAAHRTSLEAVLXXXXXXXXXXXXDSHQRTPLHWAAA 449
            TPL+ AA  G      ALLA GADV     E   +T + +AA   H   V A I        +K  G  TALH AA  N  E ++ L+  GA+ +ARN LG TPL    HA H+  + A+L                 +PLH AAA
Sbjct:   44 TPLHHAAEEGDDVVIEALLAIGADVDEVDSE--GQTALMLAASWGHPSSVNALIRVGNASINLKDEGGDTALHEAARANELETLSQLISLGADKDARNKLGATPLLLASHAGHKRIVVALLDAGAAATGKKSLMRGGYSPLHAAAA 187          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A0A7K9DIH4_9AVES (ASB10 protein (Fragment) n=1 Tax=Hemiprocne comata TaxID=243314 RepID=A0A7K9DIH4_9AVES)

HSP 1 Score: 59.7 bits (143), Expect = 2.550e-7
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = -1
Query:  126 GKTEIVQLLLVKGADKDALDNNKRTPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGCTPLRHA 521
            G TE + LLL++GAD   L    RT L+ A +    A A  LLA GAD    S +  K   +H+    + +  V+  ++H+A V++       TALH+AA       +  LL  GA +EA N  G TPL  A
Sbjct:  127 GYTECLHLLLLRGADP-GLAPGGRTALHQACAAASAACARLLLAFGADPEAVSEDGYKP--LHLCKSPDSLKCVQQLLQHEASVNSRTEEEGDTALHIAARHGLTRHVQLLLRCGAELEAENKEGQTPLNAA 255          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.250e-7
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = -1
Query:   24 SGEYVKETVVHVAAQGEHVGIVRAAIEH--DADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGC----TPLRHAAHRTSLEAVLXXXXXXXXXXXXDSHQRTPLHWAA 365
            + E      ++VA Q  HVG+++A +EH  DA   A  + G  TALH AAL N+ EA+  LLEAGA+ +  ++ G     TPL  AA   S EA+             D +   PLH AA
Sbjct:  162 ASEVFPNAEINVATQLGHVGVIKAFLEHGVDASSQACPASG-WTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAA 280          
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Match: A9V1C4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1C4_MONBE)

HSP 1 Score: 58.2 bits (139), Expect = 3.850e-7
Identity = 49/165 (29.70%), Postives = 68/165 (41.21%), Query Frame = -1
Query:   27 GKTEIVQLLLVKGADKDALDNNKRTPLYVAASCGHVAAALALLAAGADVSLWSGEYVKETVVHVAAQGEHVGIVRAAIEHDADVDAVKSVGEHTALHLAALLNRGEAINALLEAGANIEARNVLGCTPLRHAAHRTSLEAVLXXXXXXXXXXXXDSHQRTPLHWA 521
            G  ++VQ LL  GAD    D  +++ L++A   G        LAAGADV                              H +DV     + ++T LH+A    + +A+ ALL+AGA ++A+N  G  PL   AH   L  V             D   RTPLH A
Sbjct:   52 GHPQVVQALLDGGADLHCKDKRQQSVLHLAIIYGQTELTAIFLAAGADV------------------------------HASDVVRSLCLWQNTPLHVACRRRKVDAVRALLQAGARVDAQNEDGLQPLHCGAHGGDLHVVHLLLEHGADPKVADITGRTPLHLA 186          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1301.2389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG6_9PHAE1.750e-1040.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A350QBS5_9BACT7.270e-1039.16Uncharacterized protein (Fragment) n=1 Tax=Gemmati... [more]
A0A3B9DNZ8_9BACT2.760e-939.29Uncharacterized protein n=8 Tax=root TaxID=1 RepID... [more]
UPI001D0536194.230e-934.68uncharacterized protein n=1 Tax=Morchella sextelat... [more]
A0A8C9G2H4_PAVCR2.320e-832.26Palmitoyltransferase n=1 Tax=Pavo cristatus TaxID=... [more]
A0A167QSI4_9PEZI9.170e-838.71Ankyrin repeat-containing domain protein n=1 Tax=S... [more]
A0A6U0I3R1_MICPS1.290e-736.99Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7K9DIH4_9AVES2.550e-735.61ASB10 protein (Fragment) n=1 Tax=Hemiprocne comata... [more]
D7FSI6_ECTSI3.250e-737.50Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A9V1C4_MONBE3.850e-729.70Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1301contigL-elsbetiae_contig1301:16188..16708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1301.2389.1prot_L-elsbetiae_contig1301.2389.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1301 16268..16591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.3339143-UTR-L-elsbetiae_contig1301:16187..162671622815484.3339143-UTR-L-elsbetiae_contig1301:16187..16267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1301 16188..16267 +
1691682920.523686-UTR-L-elsbetiae_contig1301:16187..162671691682920.523686-UTR-L-elsbetiae_contig1301:16187..16267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1301 16188..16267 +
1622815484.3536377-UTR-L-elsbetiae_contig1301:16591..167081622815484.3536377-UTR-L-elsbetiae_contig1301:16591..16708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1301 16592..16708 +
1691682920.550875-UTR-L-elsbetiae_contig1301:16591..167081691682920.550875-UTR-L-elsbetiae_contig1301:16591..16708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1301 16592..16708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815484.3441741-CDS-L-elsbetiae_contig1301:16267..165911622815484.3441741-CDS-L-elsbetiae_contig1301:16267..16591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1301 16268..16591 +
1691682920.5359485-CDS-L-elsbetiae_contig1301:16267..165911691682920.5359485-CDS-L-elsbetiae_contig1301:16267..16591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1301 16268..16591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1301.2389.1

>prot_L-elsbetiae_contig1301.2389.1 ID=prot_L-elsbetiae_contig1301.2389.1|Name=mRNA_L-elsbetiae_contig1301.2389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MLQEGQHGFKTGPMGSMAKRCTTQNIPCFDVGPSFQERIDCLSSVQKCSQ
MKGCVFAHTFHSVHVCIVLDRRSHDANMLPLSRHVHYRLLNIFAGPEADV
RAGGQKS*
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mRNA from alignment at L-elsbetiae_contig1301:16188..16708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1301.2389.1 ID=mRNA_L-elsbetiae_contig1301.2389.1|Name=mRNA_L-elsbetiae_contig1301.2389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig1301:16188..16708+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCCTTGTCGCCGAGCAACGGCTGCGGCCCAGTGCAACGGCGTTCGTTG GTGGCTATCTCGGGCGTTGACGTCCGGACTATGCTTCAAGAGGGCCAACA CGGCTTCAAGACTGGTCCGATGGGCAGCATGGCGAAGAGGTGTACAACCC AAAACATTCCGTGCTTCGATGTTGGCCCCAGCTTCCAAGAGCGCATTGAT TGCCTCTCCTCTGTTCAAAAGTGCAGCCAAATGAAGGGCTGTGTGTTCGC CCACACTTTTCACAGCGTCCACGTCTGCATCGTGCTCGATCGCCGCTCGC ACGATGCCAACATGCTCCCCTTGAGCCGCCACGTGCACTACCGTCTCCTT AACATATTCGCCGGACCAGAGGCTGACGTCCGCGCCGGCGGCCAAAAGAG CTAGTGCGGCAGCCACATGACCACACGAGGCGGCCACATAAAGCGGTGTG CGTTTGTTGTTGTCCAACGCGTCCTTGTCGGCCCCCTTGACCAACAACAG CTGCACAATCTCCGTTTTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1301:16188..16708+

>mRNA_L-elsbetiae_contig1301.2389.1 ID=mRNA_L-elsbetiae_contig1301.2389.1|Name=mRNA_L-elsbetiae_contig1301.2389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1301:16188..16708+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCAAGAGGGCCAACACGGCTTCAAGACTGGTCCGATGGGCAGCAT
GGCGAAGAGGTGTACAACCCAAAACATTCCGTGCTTCGATGTTGGCCCCA
GCTTCCAAGAGCGCATTGATTGCCTCTCCTCTGTTCAAAAGTGCAGCCAA
ATGAAGGGCTGTGTGTTCGCCCACACTTTTCACAGCGTCCACGTCTGCAT
CGTGCTCGATCGCCGCTCGCACGATGCCAACATGCTCCCCTTGAGCCGCC
ACGTGCACTACCGTCTCCTTAACATATTCGCCGGACCAGAGGCTGACGTC
CGCGCCGGCGGCCAAAAGAGCTAGATGCTTCAAGAGGGCCAACACGGCTT
CAAGACTGGTCCGATGGGCAGCATGGCGAAGAGGTGTACAACCCAAAACA
TTCCGTGCTTCGATGTTGGCCCCAGCTTCCAAGAGCGCATTGATTGCCTC
TCCTCTGTTCAAAAGTGCAGCCAAATGAAGGGCTGTGTGTTCGCCCACAC
TTTTCACAGCGTCCACGTCTGCATCGTGCTCGATCGCCGCTCGCACGATG
CCAACATGCTCCCCTTGAGCCGCCACGTGCACTACCGTCTCCTTAACATA
TTCGCCGGACCAGAGGCTGACGTCCGCGCCGGCGGCCAAAAGAGCTAG
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