mRNA_L-elsbetiae_contig13002.2386.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE) HSP 1 Score: 228 bits (582), Expect = 1.330e-66 Identity = 113/155 (72.90%), Postives = 128/155 (82.58%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+KEAIFLR LW IFPGR +G T V EDNVGA+HLA+NP TPNS HIDIRHH+ RE VARGEFK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 23 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 177
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.880e-63 Identity = 108/156 (69.23%), Postives = 128/156 (82.05%), Query Frame = 3 Query: 6 VDLELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNI 473 V LE+++DSD+ASKATDRRSV +VMCAG VSF RTQ+SV LSSTEAEY AMADG+KEAIFLR LWS IFP +G T++ EDNVGALHLANNP TPNS HID+RHH+ RE V RGEFK+V+VPS+ QH DFLTKPLP+ +F +HR+F MN+ Sbjct: 190 VSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE) HSP 1 Score: 228 bits (582), Expect = 9.020e-62 Identity = 113/155 (72.90%), Postives = 128/155 (82.58%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+KEAIFLR LW IFPGR +G T V EDNVGA+HLA+NP TPNS HIDIRHH+ RE VARGEFK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 422 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 576
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 228 bits (582), Expect = 4.260e-60 Identity = 113/155 (72.90%), Postives = 128/155 (82.58%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+KEAIFLR LW IFPGR +G T V EDNVGA+HLA+NP TPNS HIDIRHH+ RE VARGEFK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 646 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 800
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 228 bits (582), Expect = 1.370e-58 Identity = 113/155 (72.90%), Postives = 128/155 (82.58%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+KEAIFLR LW IFPGR +G T V EDNVGA+HLA+NP TPNS HIDIRHH+ RE VARGEFK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 1722 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1876
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE) HSP 1 Score: 215 bits (548), Expect = 3.630e-57 Identity = 108/155 (69.68%), Postives = 124/155 (80.00%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +EL +DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+ EAIFLR LW +IF +G T V EDNVGA+HLA+NP TPNS HIDIRHH+ RE VARGEFK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 409 MELLVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMTEAIFLRYLWKIIFSVLDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 563
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 223 bits (568), Expect = 3.830e-57 Identity = 107/156 (68.59%), Postives = 127/156 (81.41%), Query Frame = 3 Query: 6 VDLELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNI 473 V LE+++DSD+ASKATDRRSV +VMCAG VSF RTQ+SV LSSTEAEY AMADG+KEAIFLR LWS I P +G T++ EDNVGALHLANNP TPNS HID+RHH+ RE V RGEFK+V+VPS+ QH DFLTKPLP+ +F +HR+F MN+ Sbjct: 958 VSLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHFIRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5K862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K862_9PHAE) HSP 1 Score: 221 bits (563), Expect = 3.870e-56 Identity = 111/155 (71.61%), Postives = 127/155 (81.94%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+K AIF+R LW IFPGR +G T V EDNVGA+HLA+NP TPNS HIDIRHH+ RE VARGEFK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 2140 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMK-AIFMRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 2293
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE) HSP 1 Score: 220 bits (560), Expect = 3.960e-56 Identity = 110/155 (70.97%), Postives = 125/155 (80.65%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNIR 476 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+S LSSTEAEYVAM+DG+KEAIFLR LW IFPGR +G T V EDNVGA+HLA+NP TPNS IDIRHH+ RE VARG FK+VHV S+ Q DFLTKPLP+ +FC HRDF MNIR Sbjct: 950 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSGTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKQIDIRHHFIRERVARGGFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNIR 1104
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE) HSP 1 Score: 218 bits (556), Expect = 7.640e-56 Identity = 108/154 (70.13%), Postives = 123/154 (79.87%), Query Frame = 3 Query: 12 LELFMDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMADGLKEAIFLRGLWSLIFPGRHIGTTLVHEDNVGALHLANNPRITPNSTHIDIRHHYFRESVARGEFKIVHVPSNHQHEDFLTKPLPR*SFCIHRDFAMNI 473 +ELF+DSDFA+KATDRRSV ALVM AG V +L RTQ+SV LSSTEAEYVAM+DG+KEAIFLR LW +FPGR +G T V EDNVGA HLA+ TPNS HIDIRHH+ RE VARGEFK+VH S+ Q DFLTKPLP+ +FC HRDF MNI Sbjct: 838 MELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFVMNI 991 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13002.2386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13002.2386.1 >prot_L-elsbetiae_contig13002.2386.1 ID=prot_L-elsbetiae_contig13002.2386.1|Name=mRNA_L-elsbetiae_contig13002.2386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp MDSDFASKATDRRSVYSALVMCAGGWVSFLFRTQRSVALSSTEAEYVAMAback to top mRNA from alignment at L-elsbetiae_contig13002:1947..4422+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13002.2386.1 ID=mRNA_L-elsbetiae_contig13002.2386.1|Name=mRNA_L-elsbetiae_contig13002.2386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2476bp|location=Sequence derived from alignment at L-elsbetiae_contig13002:1947..4422+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13002:1947..4422+ >mRNA_L-elsbetiae_contig13002.2386.1 ID=mRNA_L-elsbetiae_contig13002.2386.1|Name=mRNA_L-elsbetiae_contig13002.2386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig13002:1947..4422+ (Laminarionema elsbetiae ELsaHSoW15)back to top |