mRNA_L-elsbetiae_contig13.2371.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 4.150e-16 Identity = 80/253 (31.62%), Postives = 99/253 (39.13%), Query Frame = 2 Query: 1160 PNVANAVFEVGDGFCNGGPWNTPQCNFDGGDCCVSTCTPVSLAELAGNRATTADDCASEEVG--------------------DGFCDFELNNEVXXXXXXXXXXXXXXXGAGGECLEGTFDCRDGSEPPEDTEPRAQSCGSRTMQCLDPAAVQEAPAGCADTRRARALRLEDSEHGSPLANKAIRRLQEGPPVEEDCGSSVIQWGDGVCDARLNTELCNFDGGDCCAQTCVRSPLYPDSCLYFDCVDPSVGAD 1858 P + +GDG+C+ NT C FDGGDCC TC + + DC +V DG+CD +LN GG+C T CRD D+ SCG CLDP EAP+ C+ DS SP A + P +C + + GDG CD N E C++DGGDCCA TCV S Y FDC DPSV D Sbjct: 160 PGCGGYIPHIGDGYCDEDN-NTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRDPDVPEDCNLANFAQCEGMNGYDWQDGYCDDDLNTAECGYD-------------GGDCCRCT--CRD-----YDSWGYYSSCGYYGYDCLDP----EAPSSCST----------DSPTPSPAAGT------DWP----ECEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTCV-SGYYTCGYYTFDCEDPSVSTD 366
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A3M0YD72_9BACT (Gliding motility-associated C-terminal domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M0YD72_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 6.560e-13 Identity = 74/212 (34.91%), Postives = 103/212 (48.58%), Query Frame = 2 Query: 1754 NFDGGDCCAQTCVRSPLYPDSCLYFDCVDPSVGADEPVAAFDGEAPELKNLPIQDLNVTVQECIA----PASNLVIVSDNDPCFEGGVVVPT-DEIEGADNCSFTLTRTWAAEDLSSNSVQAQRTYQVADTESPVLTGLPAEGLVVQTDDPNFSFGNDTSVAAVDACSGLEVPVVYTESTVLGEAGDACVRTVARTWTAEDGCGNSVSATRT 2374 + GG + T VR+ D+C A + + D EAP + +P ++T EC A PA V+ +DN C V T D + G +TL R WAA D N+ A++T V DTE+PVLTG+PA+ + PN + S+ A D C VV+T+ ++ G G A T+ RTWTA D CGN SAT+T Sbjct: 57 SIPGGCAGSYTLVRTWTATDACGN------ESSATQTIEVGDSEAPVIAGVPA---DITA-ECSAIPDVPAD--VVATDN--CNANPTVEFTQDSLPGTCPGEYTLIRQWAATDACGNTTMAEQTIVVQDTETPVLTGVPADVNAGCDEVPNVP--DPASIVATDNCDPSPT-VVFTQDSIPG--GCAGSYTLVRTWTATDACGNETSATQT 249
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A383W206_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W206_TETOB) HSP 1 Score: 81.3 bits (199), Expect = 1.600e-11 Identity = 109/431 (25.29%), Postives = 150/431 (34.80%), Query Frame = 2 Query: 1091 ALIDFEIPELVDLTCPELLER-FTPNVANAVFEVGDGFCNGGPW-NTPQCNFDGGDCCVSTCTPVSLAELAGNRATTADDCASEEVGDGFCDFELNNEVXXXXXXXXXXXXXXXGAGGECLEGTFDCRDGSEPPEDTEPRAQSCG---SRTMQCLDPAAVQEAPAGCADTRRARALRLEDSEHGSPLANKAIRRLQEGPPVEEDCGSSVIQWGDGVCDARLNTELCNFDGGDCCAQTCVRSPLYPDSCLYFD---CVDPSVGADEPVAAFDGEAPELKNLPI----QDLNVTVQECIAPASNLVIVSDND-------PCFEGGVVVPTDEIEGADNCS----FTLTRTWAAEDLSSNSVQAQRTYQVADTESPVL-----------------TGLPAEGLVVQTD-DPNFSFGNDTSVAAVDACSGLEVPV 2260 +L FE E L EL + N + + EVG+ FC+ PW N+P CN+DGGDCC STC P L E + T A+ C F C D S T+ G S L + D + + ++R+ V G+S GVCD RLN E N+DGGDCCA +C +P P SC + C+DP+ E + PE P+ D + + I + L D P +P E S +T++ TW A+D ++N+ A +T V PVL TG G V T P ++ + T VA CS VPV Sbjct: 1399 SLKSFEPDEPCSLLGEELAQLGLVANASTFLAEVGNSFCSPSPWLNSPACNYDGGDCCPSTCQP--LCEQVSSANDTIGTLATYVTLSWSCS-------------------------------RFQCSDPSAQANSTKASVNCTGTAVSSPNSLLQRLLLPVVAGDVVDVK------------------EVLQRVGRAKLVSAT-GTS------GVCDPRLNNEANNWDGGDCCADSCKPNPAIPGSCEFIPAAACLDPTYSNPE-------QPPEDVQPPVITAPADYTTSCRSTIFSTTALTAYDKVDGIIVLAAPTISSSNSLPVSLTEPLPCASTDEVYTVSLTWTAKDSANNTATAVQTIYVLPP-PPVLGCSGSPTAPANATAFDCTGFSGPGDVCTTTCQPGYTLTSGTLVAV---CSSDAVPV 1760
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 3.540e-10 Identity = 73/244 (29.92%), Postives = 95/244 (38.93%), Query Frame = 2 Query: 1187 VGDGFCNGGPWNTPQCNFDGGDCCVSTCT--------PVSLAELAGNRATTADDCASEE----------VGDGFCDFELNNEVXXXXXXXXXXXXXXXGAGGECLEGTFDCRDGSEPPEDTEPRAQSCGSRTMQ--CLDPAAVQEAPAGCADTRRARALRLEDSEHGSPLANKAIRRLQEGPPVEEDCGSSVIQWGDGVCDARLNTELCNFDGGDCCAQTCVRSPLYPDSCL----YFDCVDPS 1846 +GDG+C+ NTP+C +DGGDCC TC A + A DD + + VGDG+CD NNE GG+C E T + +E ED R M+ C+DP+A P N + + E+CG V G+G CD N E C +DGGDCC+ TC + SC YFDC DPS Sbjct: 357 IGDGYCSE-DLNTPECAYDGGDCCACTCQNDVDDDWXXXXFACIDPEAACVNDDDITVDMFVNCEYPVNVGDGWCDQGNNNEACGYD-------------GGDCCECTCE----NERDEDY---------RCMEFSCIDPSA--------------------------PCVNDDDVTID----MVENCGY-VSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPS 542
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A842IUV8_9FLAO (Gliding motility-associated C-terminal domain-containing protein n=1 Tax=Winogradskyella flava TaxID=1884876 RepID=A0A842IUV8_9FLAO) HSP 1 Score: 69.3 bits (168), Expect = 6.220e-8 Identity = 61/172 (35.47%), Postives = 85/172 (49.42%), Query Frame = 2 Query: 1877 DGEAPELKNLPIQDLNVTVQECIAPAS--NLVIVSDNDPCFEGGVVVPTDEIEGADNCSFTLTRTWAAEDLSSNSVQAQRTYQVADTESPVLTGLPAEGLVVQTDDPNFSFGNDTSVAAVDACSGLEVPVVYTESTVLGEAGDACVRTVARTWTAEDGCGNSVSATRTATVE 2386 D APEL +P+ N+T+ EC +S N S D C + EI A + T+TRTW A D N V A + V DT P LT +PA+ + ++D + + N A+D C + + T+S V A +T+ RTWTA D CGNSVS T+T V+ Sbjct: 682 DTVAPEL-TIPV---NITI-ECDEDSSPTNTGTASAIDDCATPTITFVDSEI-AACGSTKTITRTWTATDACGNIVSADQIIIVQDTTPPTLT-VPADATIECSEDESST--NTGMATAIDTCGSVTI----TQSDV-DTAACGTTKTIVRTWTATDECGNSVSETQTIVVQ 839
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A1V4V1Y0_9EURY (HYR domain protein n=1 Tax=Methanosaeta sp. PtaB.Bin039 TaxID=1811685 RepID=A0A1V4V1Y0_9EURY) HSP 1 Score: 68.6 bits (166), Expect = 1.250e-7 Identity = 67/245 (27.35%), Postives = 102/245 (41.63%), Query Frame = 2 Query: 1658 LQEGPPVEEDCGSSVIQWGDGVCDARLNTELCNFDGGDCCAQ--TCVRSPLYPDSCLYFDCVDPSVGADEPVAAFDGEAPELKNLPIQDLNVTVQECIAPASNLVIVSDNDPCFEGGVVVPTDEIEGADNCSFTLTRTWAAEDLSSNSVQAQRTYQVADTESPVLTGLPAEGLVVQTDDPNFSFGNDTSVA-AVDACSGLEVPVVYTESTVLGEAGDACVRTVARTWTAEDGCGNSVSATRTATV 2383 L GP D G++ CDA +N + C T R+ D+C F + + FDGE P + + D+ ++ E I P + +++D V G+ +++ RTW AED N +T V DT PV+ P++ + +D S +T A A D C V + Y++ G D R++ARTW AED CGN + T+T TV Sbjct: 1866 LTVGPQDPTDPGNTGFATATDNCDASVNITYSDLVTPGVCPDQWTIARTWRAEDNCGNF------ATCTQTITVFDGEPPTI--VCPSDVTISCDESIHPDNTGWAQAEDDSGSPANVTYHDLVTPGSCPDQWSIVRTWRAEDNCGNVATCTQTITVVDTTLPVIV-CPSDVTISCSDS---SLPENTGFATATDNCD-TSVTITYSDLVTPGSCPDQ--RSIARTWRAEDNCGNVATCTQTITV 2095
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 2.420e-7 Identity = 72/256 (28.12%), Postives = 100/256 (39.06%), Query Frame = 2 Query: 1187 VGDGFCNGGPWNTPQCNFDGGDCCVSTC-TPVS-------LAELAGNRATTADDCASEE----------VGDGFCDFELNNEVXXXXXXXXXXXXXXXGAGGECLEGTFDCRDGSEPPEDTEPRAQSCGSRTMQCLDPAAVQEAPAGCADTRRARALRLEDSEHGSPLANKAIRRLQEGPPVEEDCGSSVIQWGDGVCDARLNTELCNFDGGDCCAQTCVRSPLYPD-SCLY----FDCVDPSVGA--DEPVAAFD 1879 +GDG+C+ NTP+C +DGGDCC TC +P A + A DD + + +G+G+CD N E GG+C E T + + +D + C+DP+A C D D + + E+CG V G+G CD N E C +DGGDCC+ TC SP D SC FDC DP+ +EP + D Sbjct: 131 IGDGYCSEN-LNTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDITVDMFENCEYPVDIGNGWCDEANNIEACGYD-------------GGDCCECTCEYESPYDWDDDWDYHCME-----FACIDPSAP------CVD----------DDDITVDMV--------------ENCGY-VSGIGNGWCDRNNNKEECGYDGGDCCSCTC-ESPYDDDYSCSSEYGSFDCKDPNASCFGEEPTGSDD 335
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: A0A518LR27_9BACT (HYR domain-containing protein n=1 Tax=Phycisphaerae bacterium RAS2 TaxID=2528035 RepID=A0A518LR27_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 3.600e-7 Identity = 53/158 (33.54%), Postives = 77/158 (48.73%), Query Frame = 2 Query: 1922 NVTVQ--ECIAPASN--LVIVSDNDPCFEGGVVVPTDEIEGADNCSFTLTRTWAAEDLSSNSVQAQRTYQVADTESPVLTGLPAEGLVVQTDDPNFSFGNDTSVAAVDACSGLEVPVVYTESTVLGEAGDACVRTVARTWTAEDGCGNSVSATRTATV 2383 NVT+ + P N L + + D C + V +DE++G D+CS + RTW D S Q+ + D PVLT +PA+ +V DD S + A D C+ L Y + +G+ C +T+ RTWTA D CGNS +A + TV Sbjct: 167 NVTLPCGSSVVPGLNPALTVAAGVDDCDDEVNVSSSDEVQG-DSCSKLIVRTWRVTDNLGKSSFCQQGIVLVDETGPVLT-IPADAVVECGDD--LSPAATGELIASDGCNDLLQAPTYFDHEPIGD----CPKTILRTWTAMDVCGNSTNANQLITV 316
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: UPI001A96A62C (hypothetical protein n=1 Tax=Niastella sp. SYSU D00799 TaxID=2812563 RepID=UPI001A96A62C) HSP 1 Score: 65.9 bits (159), Expect = 7.720e-7 Identity = 46/147 (31.29%), Postives = 66/147 (44.90%), Query Frame = 2 Query: 1943 IAPASNLVIVSDNDPCFEGGVVVPTDEIEGADNCSFTLTRTWAAEDLSSNS-VQAQRTYQVADTESPVLTGLPAEGLVVQTDDPNFSFGNDTSVAAVDACSGLEVPVVYTESTVLGEAGDACVRTVARTWTAEDGCGNSVSATRTAT 2380 IA A V+DN C G TD E C ++TRTW D N+ Q Q DTE+PV+T + ++ D + T+ + +GL +T+ E G C R++ RTWT D CGN+ + T+T T Sbjct: 1762 IAAAFGTASVTDN--CATGLTATFTDGAETGTGCDRSITRTWTVTDACGNTGTQTQTITFTRDTEAPVITVTASTAVICNPTDAQIAAAFGTASVTDNCSTGLAA--TFTDG---AETGTGCDRSITRTWTVTDACGNTGTQTQTIT 1901
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Match: UPI0019685435 (hypothetical protein n=1 Tax=Pseudoflavitalea sp. SYSU D01084 TaxID=2812558 RepID=UPI0019685435) HSP 1 Score: 63.9 bits (154), Expect = 8.510e-7 Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 2 Query: 1943 IAPASNLVIVSDNDPCFEGGVVVPTDEIEGADNCSFTLTRTWAAEDLSSNSV-QAQRTYQVADTESPVLTGLPAEGLVVQ--TDDPNFSFGNDTSVAAVDACSGLEVPVVYTESTVLGEAGDACVRTVARTWTAEDGCGNSVSATRTAT 2380 IA A V+DN C G TD E C ++TRTW D N+ Q Q DTE+PV+T + ++ D +FG + + D CS + +T+ E G C R++ RTWT D CGN+ + T+T T Sbjct: 16 IAAAFGTASVTDN--CSTGLTATFTDGAETGTGCDRSITRTWTVTDACGNTTTQTQTITFTRDTEAPVITLTASTAVICNPTADQIAAAFG---TASVTDNCS-TGLTATFTDG---AETGTGCDRSITRTWTVTDACGNTATQTQTIT 155 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13.2371.1 >prot_L-elsbetiae_contig13.2371.1 ID=prot_L-elsbetiae_contig13.2371.1|Name=mRNA_L-elsbetiae_contig13.2371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=718bp MVIGGTVTVEVGSNSTAAGSDVEDPQVILVVLEAGLLAWADDWAATVLPGback to top mRNA from alignment at L-elsbetiae_contig13:14829..23829+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13.2371.1 ID=mRNA_L-elsbetiae_contig13.2371.1|Name=mRNA_L-elsbetiae_contig13.2371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9001bp|location=Sequence derived from alignment at L-elsbetiae_contig13:14829..23829+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13:14829..23829+ >mRNA_L-elsbetiae_contig13.2371.1 ID=mRNA_L-elsbetiae_contig13.2371.1|Name=mRNA_L-elsbetiae_contig13.2371.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4308bp|location=Sequence derived from alignment at L-elsbetiae_contig13:14829..23829+ (Laminarionema elsbetiae ELsaHSoW15)back to top |