mRNA_L-elsbetiae_contig13.2368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13.2368.1
Unique NamemRNA_L-elsbetiae_contig13.2368.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13contigL-elsbetiae_contig13:3494..5169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size608
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13.2368.1prot_L-elsbetiae_contig13.2368.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13 3494..5168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.8651946-CDS-L-elsbetiae_contig13:3493..35441622815479.8651946-CDS-L-elsbetiae_contig13:3493..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 3494..3544 +
1691682918.318037-CDS-L-elsbetiae_contig13:3493..35441691682918.318037-CDS-L-elsbetiae_contig13:3493..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 3494..3544 +
1622815479.8797526-CDS-L-elsbetiae_contig13:3943..40381622815479.8797526-CDS-L-elsbetiae_contig13:3943..4038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 3944..4038 +
1691682918.3317025-CDS-L-elsbetiae_contig13:3943..40381691682918.3317025-CDS-L-elsbetiae_contig13:3943..4038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 3944..4038 +
1622815479.8909254-CDS-L-elsbetiae_contig13:4220..42911622815479.8909254-CDS-L-elsbetiae_contig13:4220..4291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 4221..4291 +
1691682918.3438795-CDS-L-elsbetiae_contig13:4220..42911691682918.3438795-CDS-L-elsbetiae_contig13:4220..4291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 4221..4291 +
1622815479.9050996-CDS-L-elsbetiae_contig13:4493..47071622815479.9050996-CDS-L-elsbetiae_contig13:4493..4707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 4494..4707 +
1691682918.3516192-CDS-L-elsbetiae_contig13:4493..47071691682918.3516192-CDS-L-elsbetiae_contig13:4493..4707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 4494..4707 +
1622815479.9208567-CDS-L-elsbetiae_contig13:4993..51681622815479.9208567-CDS-L-elsbetiae_contig13:4993..5168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 4994..5168 +
1691682918.3613815-CDS-L-elsbetiae_contig13:4993..51681691682918.3613815-CDS-L-elsbetiae_contig13:4993..5168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 4994..5168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13.2368.1

>prot_L-elsbetiae_contig13.2368.1 ID=prot_L-elsbetiae_contig13.2368.1|Name=mRNA_L-elsbetiae_contig13.2368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
ETLTKILRKVNVPQIKAIAKVLTFPLKRINGLIEETNDFLEDACERTTQI
HILTLATIQEVTSTLTSLDQFTALMLPPLAEATCVSDNTFTLADELATAI
DARGEDPANPGARRAKRHLLKDTVGPRAPASLPMTGNLTVHDRRHFAAAL
TPHARDLPIRRALMYSDWEQRSASAAEAGENFDTDSEGNRKLALREPLTQ
IT
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mRNA from alignment at L-elsbetiae_contig13:3494..5169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13.2368.1 ID=mRNA_L-elsbetiae_contig13.2368.1|Name=mRNA_L-elsbetiae_contig13.2368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1676bp|location=Sequence derived from alignment at L-elsbetiae_contig13:3494..5169+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACGCTCACCAAAATCCTGAGGAAAGTGAATGTTCCTCAGATCAAAGC
TGTAAGTGGCCAAGATCAATGTCAATGAACAGAGCGAAGTGTTTGCGGGG
ACATTTCCTTCGAGATTTGTTAGGGATGTAAAATAGACGCGTATGCAAGT
GTGGGTGCGTATGGCGCTCTTTAAAGTACTTCCTCGTACGTTCGGTGGCT
CTCCGTGCTATGTATGCACATCTGTACGCTACATTCTTCCAAGCGACGGT
GGTATTGGTTGATATGCCAGGTTGTTTACACAACGTCTCTCTATCAAGCA
ACTTGCAGGCGGGATGTTTCTGGATGGTTTCCTACACATGGAGTGCATTT
CCCACACATATCCAGAAAATCTGACACCAATTGTGTTCTGAATCATCTCT
AACGCGTTCATCTGAATCGCCGTTCGTGTACTCCGACTACTCGCCGCCAG
ATCGCCAAGGTGCTGACCTTTCCCCTCAAAAGGATCAACGGCCTCATCGA
GGAGACGAACGACTTCCTTGAGGATGCTTGCGAGCGGACTACCCAGTGAG
TTGTTTTCAGATCGATCTCCTGGTATTTTAAGGCAGGATGGGAGGCGGCT
TCAGTTTATTTTTATTTTTTCTACGTGCTGTTGCGACATCGCACCCCGGC
AACTGTAAAGCCACAAACTTCTGCATCGCACGCCCAGCTGTCTTACTTTT
TCGTGCGGTTCGCTCCCCTCTCGCCAGGATTCACATTCTCACTCTGGCTA
CTATCCAGGAAGTCACCAGCACGCTTACCAGCCTGGATCAGTTCACAGGT
GGGTTGGGACGCACCAGTAAGGGGTTTGCTGAGAAGGTGAAGAGTGTTCC
TCCTCTGTCGTCAGGGATGCCAATCTTATTTTGTGAGCGTTTGCTCCGGG
TTGGGGCTCATTCTGTCAAGTGATGATATTAATTAATTTCTTGCTACCCC
CGTGCGCTACTTTTTACATTTCTCCCCATCTGTCCACTCGTTATTTCCAG
CCCTGATGCTGCCCCCCCTGGCCGAGGCGACGTGCGTGTCGGACAACACC
TTCACCCTCGCCGACGAGCTGGCCACCGCCATCGACGCGCGCGGCGAGGA
CCCCGCCAACCCCGGCGCCAGGAGGGCGAAGCGGCACCTCTTGAAGGACA
CGGTCGGGCCTCGCGCTCCTGCCTCTCTGCCCATGACCGGCAACCTCACC
GTGCACGACCGCAGGTAGGTCAAACAACCATGGGTACCAAGATGAAGGGG
CTGAGATAGCAGTACAAGTGTCTGCTCGTCTACCGTTTTCCGTTTGACGC
TACAAGCAACTAAACGGCAGGCACAAATATCTGCGAGAAAGAGACTATCC
GATCCCTCGGTGGTCGACGAGGACCTCCGCTCGTACATAGCTCACAACCC
CATCTATCACAGTGCATCTCGACCCTGCTCTTCCCTGGAAGCTGCCTAAC
CCTTCGCTGCTGCTGTTGCCTTCGCTACTTGCCGGGGATATCCGCCACAG
GCACTTCGCGGCGGCCTTGACCCCCCATGCCAGGGATCTTCCCATCAGGC
GCGCGCTGATGTACTCCGACTGGGAACAACGCTCCGCATCTGCGGCAGAA
GCGGGAGAGAACTTCGACACCGACTCGGAGGGCAACCGCAAGCTGGCTCT
GCGCGAGCCTCTGACACAGATCACCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13:3494..5169+

>mRNA_L-elsbetiae_contig13.2368.1 ID=mRNA_L-elsbetiae_contig13.2368.1|Name=mRNA_L-elsbetiae_contig13.2368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig13:3494..5169+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACGCTCACCAAAATCCTGAGGAAAGTGAATGTTCCTCAGATCAAAGC
TGAGACGCTCACCAAAATCCTGAGGAAAGTGAATGTTCCTCAGATCAAAG
CTATCGCCAAGGTGCTGACCTTTCCCCTCAAAAGGATCAACGGCCTCATC
GAGGAGACGAACGACTTCCTTGAGGATGCTTGCGAGCGGACTACCCAATC
GCCAAGGTGCTGACCTTTCCCCTCAAAAGGATCAACGGCCTCATCGAGGA
GACGAACGACTTCCTTGAGGATGCTTGCGAGCGGACTACCCAGATTCACA
TTCTCACTCTGGCTACTATCCAGGAAGTCACCAGCACGCTTACCAGCCTG
GATCAGTTCACAGGATTCACATTCTCACTCTGGCTACTATCCAGGAAGTC
ACCAGCACGCTTACCAGCCTGGATCAGTTCACAGCCCTGATGCTGCCCCC
CCTGGCCGAGGCGACGTGCGTGTCGGACAACACCTTCACCCTCGCCGACG
AGCTGGCCACCGCCATCGACGCGCGCGGCGAGGACCCCGCCAACCCCGGC
GCCAGGAGGGCGAAGCGGCACCTCTTGAAGGACACGGTCGGGCCTCGCGC
TCCTGCCTCTCTGCCCATGACCGGCAACCTCACCGTGCACGACCGCAGCC
CTGATGCTGCCCCCCCTGGCCGAGGCGACGTGCGTGTCGGACAACACCTT
CACCCTCGCCGACGAGCTGGCCACCGCCATCGACGCGCGCGGCGAGGACC
CCGCCAACCCCGGCGCCAGGAGGGCGAAGCGGCACCTCTTGAAGGACACG
GTCGGGCCTCGCGCTCCTGCCTCTCTGCCCATGACCGGCAACCTCACCGT
GCACGACCGCAGGCACTTCGCGGCGGCCTTGACCCCCCATGCCAGGGATC
TTCCCATCAGGCGCGCGCTGATGTACTCCGACTGGGAACAACGCTCCGCA
TCTGCGGCAGAAGCGGGAGAGAACTTCGACACCGACTCGGAGGGCAACCG
CAAGCTGGCTCTGCGCGAGCCTCTGACACAGATCACCGCACTTCGCGGCG
GCCTTGACCCCCCATGCCAGGGATCTTCCCATCAGGCGCGCGCTGATGTA
CTCCGACTGGGAACAACGCTCCGCATCTGCGGCAGAAGCGGGAGAGAACT
TCGACACCGACTCGGAGGGCAACCGCAAGCTGGCTCTGCGCGAGCCTCTG
ACACAGATCACC
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