mRNA_L-elsbetiae_contig13.2367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13.2367.1
Unique NamemRNA_L-elsbetiae_contig13.2367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13.2367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13contigL-elsbetiae_contig13:1099..1974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size484
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.8049517-CDS-L-elsbetiae_contig13:1098..15311622815479.8049517-CDS-L-elsbetiae_contig13:1098..1531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 1099..1531 +
1691682918.2969172-CDS-L-elsbetiae_contig13:1098..15311691682918.2969172-CDS-L-elsbetiae_contig13:1098..1531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 1099..1531 +
1622815479.823668-CDS-L-elsbetiae_contig13:1924..19741622815479.823668-CDS-L-elsbetiae_contig13:1924..1974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 1925..1974 +
1691682918.3095198-CDS-L-elsbetiae_contig13:1924..19741691682918.3095198-CDS-L-elsbetiae_contig13:1924..1974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13 1925..1974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13.2367.1prot_L-elsbetiae_contig13.2367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13 1099..1974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13.2367.1

>prot_L-elsbetiae_contig13.2367.1 ID=prot_L-elsbetiae_contig13.2367.1|Name=mRNA_L-elsbetiae_contig13.2367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
PSVLTSNKDTFLDDTAREAATMRHDLQHGASATTRPRAYRSRFLPVVLGS
LSFLGMIDFAQSQSLAERQLADDWVKTTVQTSFGGEAKELAAYRKLQSSR
AVQTDERAPTPLEEEFKGRLTEGMLTRLREDRDPESIFEFENDAYKCGPS
DVGGNVFDPSS
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mRNA from alignment at L-elsbetiae_contig13:1099..1974+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13.2367.1 ID=mRNA_L-elsbetiae_contig13.2367.1|Name=mRNA_L-elsbetiae_contig13.2367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig13:1099..1974+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTCGGTCCTGACCAGCAACAAAGACACCTTTTTAGACGACACTGCTCG
AGAAGCGGCAACCATGCGTCATGACCTACAACATGGCGCGTCCGCAACAA
CACGCCCCCGTGCTTATCGCTCCCGATTCCTGCCTGTCGTGCTCGGATCC
CTGTCCTTCCTCGGGATGATCGACTTTGCGCAGTCTCAGTCGCTGGCAGA
ACGTCAACTCGCCGATGACTGGGTGAAGACAACCGTTCAGACCAGCTTCG
GAGGCGAGGCCAAGGAGCTTGCAGCGTACCGGAAGCTGCAGAGCAGCAGA
GCGGTACAGACCGACGAGCGCGCTCCGACTCCGTTGGAGGAGGAATTCAA
GGGCCGACTGACTGAAGGGATGTTGACCAGGCTTCGAGAGGACCGCGACC
CCGAAAGCATCTTCGAGTTCGAGAACGACGCATGTAGGTGTATCTACATG
GTCTAGCTATCTTACGAGATCTAGTCGAGATGTTTTGAACGCTAGATGAG
TTTTAGTTTCAGATTGAGCGAAAGCCCCCAACACAGACCGTAGCTCTACG
TATGTAACAAAGCAGCAGGCCGGGCGGAACAAGAAGTAGGTTGCATACGA
GATTTTACAGAACCCGGATCATTGATACACTTGGCAACATACGGGAAAAT
TGAGCGGGGCGGGGAGGTGCATATCTAGTCAACTTGGATGCAAACAAATG
AAACTGTGAGAAATATTGTGTGCTTCCACCTATAGACTAGACTAGATAAC
TAGTCACGAAATCTCACCTCCACCGTTTATTCGCCCCGGCTGCATGCACG
GCTCATTGGATTTGTTGTCCTCACAGACAAGTGTGGTCCCAGCGACGTGG
GCGGCAACGTCTTCGACCCCTCCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13:1099..1974+

>mRNA_L-elsbetiae_contig13.2367.1 ID=mRNA_L-elsbetiae_contig13.2367.1|Name=mRNA_L-elsbetiae_contig13.2367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig13:1099..1974+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTCGGTCCTGACCAGCAACAAAGACACCTTTTTAGACGACACTGCTCG
AGAAGCGGCAACCATGCGTCATGACCTACAACATGGCGCGTCCGCAACAA
CACGCCCCCGTGCTTATCGCTCCCGATTCCTGCCTGTCGTGCTCGGATCC
CTGTCCTTCCTCGGGATGATCGACTTTGCGCAGTCTCAGTCGCTGGCAGA
ACGTCAACTCGCCGATGACTGGGTGAAGACAACCGTTCAGACCAGCTTCG
GAGGCGAGGCCAAGGAGCTTGCAGCGTACCGGAAGCTGCAGAGCAGCAGA
GCGGTACAGACCGACGAGCGCGCTCCGACTCCGTTGGAGGAGGAATTCAA
GGGCCGACTGACTGAAGGGATGTTGACCAGGCTTCGAGAGGACCGCGACC
CCGAAAGCATCTTCGAGTTCGAGAACGACGCATCCTTCGGTCCTGACCAG
CAACAAAGACACCTTTTTAGACGACACTGCTCGAGAAGCGGCAACCATGC
GTCATGACCTACAACATGGCGCGTCCGCAACAACACGCCCCCGTGCTTAT
CGCTCCCGATTCCTGCCTGTCGTGCTCGGATCCCTGTCCTTCCTCGGGAT
GATCGACTTTGCGCAGTCTCAGTCGCTGGCAGAACGTCAACTCGCCGATG
ACTGGGTGAAGACAACCGTTCAGACCAGCTTCGGAGGCGAGGCCAAGGAG
CTTGCAGCGTACCGGAAGCTGCAGAGCAGCAGAGCGGTACAGACCGACGA
GCGCGCTCCGACTCCGTTGGAGGAGGAATTCAAGGGCCGACTGACTGAAG
GGATGTTGACCAGGCTTCGAGAGGACCGCGACCCCGAAAGCATCTTCGAG
TTCGAGAACGACGCATACAAGTGTGGTCCCAGCGACGTGGGCGGCAACGT
CTTCGACCCCTCCAGCACAAGTGTGGTCCCAGCGACGTGGGCGGCAACGT
CTTCGACCCCTCCAGC
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