mRNA_L-elsbetiae_contig12997.2366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12997.2366.1
Unique NamemRNA_L-elsbetiae_contig12997.2366.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12997.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12997contigL-elsbetiae_contig12997:61..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815479.723692-CDS-L-elsbetiae_contig12997:60..2281622815479.723692-CDS-L-elsbetiae_contig12997:60..228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12997 61..228 -
1691682918.278846-CDS-L-elsbetiae_contig12997:60..2281691682918.278846-CDS-L-elsbetiae_contig12997:60..228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12997 61..228 -
1622815479.7702885-CDS-L-elsbetiae_contig12997:815..8511622815479.7702885-CDS-L-elsbetiae_contig12997:815..851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12997 816..851 -
1691682918.287902-CDS-L-elsbetiae_contig12997:815..8511691682918.287902-CDS-L-elsbetiae_contig12997:815..851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12997 816..851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12997.2366.1prot_L-elsbetiae_contig12997.2366.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12997 61..851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12997.2366.1

>prot_L-elsbetiae_contig12997.2366.1 ID=prot_L-elsbetiae_contig12997.2366.1|Name=mRNA_L-elsbetiae_contig12997.2366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MQLRFHFRTHTEEHCAIHCSPEARDDVTLWRTTPDGEEELLWNSSRAESN
NAWLEGIALKRRRRCACT
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mRNA from alignment at L-elsbetiae_contig12997:61..851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12997.2366.1 ID=mRNA_L-elsbetiae_contig12997.2366.1|Name=mRNA_L-elsbetiae_contig12997.2366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=791bp|location=Sequence derived from alignment at L-elsbetiae_contig12997:61..851- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACTCAGATTCCATTTCCGAACTCACACAGAGGTGAGAAGTGACGC
CCAACGTTAGGATGTTGATCCGGGGCGTCGACAACTAGTCCAAACGCTTC
GCATTTGCTTCATTCCACCCCCTGTAGAGGGTTCGTGCCCTGTAGAGGGA
GTCCATCAAGGTTGATGCTTCCAATAAAACTATAAGTATAGAAAATAAAA
TGACCCTTCACGAAAAAAAAGGCCGCACTAGGTATAGAACCCGGGTAGGA
TAGACTAGCGTCGCCCGCAGACTCTGCAGTAGAATCAGAGACTCAACTAC
ATAATCGTCCTTGAAAACCTATCCTGCGTCAACACTTCTGCTGTCGGCTC
TACGAGAAGCTGCCTTACCACAGCGTATTGTGGTCATGAAATACTGCAAA
CGTGGCCACTATGCTTTTTAAGAGGGTTGGTTAAGATGAGCCCTGCGGCA
TTCCGCACCCCAGCCAGGGCAAGGGGGGTTTGACCCCTGCAGGGGGTACC
CCCAGAGACACGTTTGACGCCCTGCCTTGCAACCTGTTGACACCTTTAGA
ATCAACACCTCCCGCCGTCTCGAAATATGTCTCGAAATATGTTTTTCCTC
GGACCCGCACGCGCTAATATCAGGAGCATTGCGCAATTCATTGTAGTCCG
GAAGCTCGTGATGATGTTACTTTATGGCGCACTACCCCCGACGGCGAAGA
AGAATTATTATGGAACTCTTCAAGGGCAGAGAGCAACAACGCTTGGTTGG
AAGGTATTGCACTAAAGAGGCGTCGACGTTGTGCGTGTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12997:61..851-

>mRNA_L-elsbetiae_contig12997.2366.1 ID=mRNA_L-elsbetiae_contig12997.2366.1|Name=mRNA_L-elsbetiae_contig12997.2366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig12997:61..851- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACTCAGATTCCATTTCCGAACTCACACAGAGATGCAACTCAGATT
CCATTTCCGAACTCACACAGAGGAGCATTGCGCAATTCATTGTAGTCCGG
AAGCTCGTGATGATGTTACTTTATGGCGCACTACCCCCGACGGCGAAGAA
GAATTATTATGGAACTCTTCAAGGGCAGAGAGCAACAACGCTTGGTTGGA
AGGTATTGCACTAAAGAGGCGTCGACGTTGTGCGTGTACTGAGCATTGCG
CAATTCATTGTAGTCCGGAAGCTCGTGATGATGTTACTTTATGGCGCACT
ACCCCCGACGGCGAAGAAGAATTATTATGGAACTCTTCAAGGGCAGAGAG
CAACAACGCTTGGTTGGAAGGTATTGCACTAAAGAGGCGTCGACGTTGTG
CGTGTACT
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