mRNA_L-elsbetiae_contig12974.2351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12974.2351.1
Unique NamemRNA_L-elsbetiae_contig12974.2351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12974.2351.1 vs. uniprot
Match: A0A6H5K5D8_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.200e-25
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:   52 PLFEALYVVSVEGGPTDGDGGMLGGGGQGAMVSPRSSVEAFQRANQQCPPRVVWRYDETGTTAVRQEDVLKFCFPDKEAIKPVR 303
            PLFEALYVVSVE   ++        GG G   +P SSVEA+QRA++QCPPRV+WR+  +G TAVR+EDVLKFCFPD+EAIKP R
Sbjct:   25 PLFEALYVVSVEEDASNR-------GGDGGAAAPSSSVEAYQRASRQCPPRVIWRFPSSGETAVREEDVLKFCFPDREAIKPSR 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12974.2351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5D8_9PHAE1.200e-2563.10UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12974contigL-elsbetiae_contig12974:1462..5222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12974.2351.1prot_L-elsbetiae_contig12974.2351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12974 1502..5163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.9248543-UTR-L-elsbetiae_contig12974:1461..15011622815477.9248543-UTR-L-elsbetiae_contig12974:1461..1501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12974 1462..1501 +
1691682917.3675902-UTR-L-elsbetiae_contig12974:1461..15011691682917.3675902-UTR-L-elsbetiae_contig12974:1461..1501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12974 1462..1501 +
1622815477.9630165-UTR-L-elsbetiae_contig12974:5163..52221622815477.9630165-UTR-L-elsbetiae_contig12974:5163..5222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12974 5164..5222 +
1691682917.3989608-UTR-L-elsbetiae_contig12974:5163..52221691682917.3989608-UTR-L-elsbetiae_contig12974:5163..5222Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12974 5164..5222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815477.9368777-CDS-L-elsbetiae_contig12974:1501..16811622815477.9368777-CDS-L-elsbetiae_contig12974:1501..1681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12974 1502..1681 +
1691682917.382137-CDS-L-elsbetiae_contig12974:1501..16811691682917.382137-CDS-L-elsbetiae_contig12974:1501..1681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12974 1502..1681 +
1622815477.9493883-CDS-L-elsbetiae_contig12974:5139..51631622815477.9493883-CDS-L-elsbetiae_contig12974:5139..5163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12974 5140..5163 +
1691682917.3904328-CDS-L-elsbetiae_contig12974:5139..51631691682917.3904328-CDS-L-elsbetiae_contig12974:5139..5163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12974 5140..5163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12974.2351.1

>prot_L-elsbetiae_contig12974.2351.1 ID=prot_L-elsbetiae_contig12974.2351.1|Name=mRNA_L-elsbetiae_contig12974.2351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MATFPCLRPCTWSPWRAAPRMGMAACWGEGGRAPWCLRAPAWRPSSVLTS
SALHGSCGGMTRLALLR*
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mRNA from alignment at L-elsbetiae_contig12974:1462..5222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12974.2351.1 ID=mRNA_L-elsbetiae_contig12974.2351.1|Name=mRNA_L-elsbetiae_contig12974.2351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3761bp|location=Sequence derived from alignment at L-elsbetiae_contig12974:1462..5222+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCACCAGGACCAGCACCAGCCGCCGCCGCCGCCTCAAGATGGCGACGT
TCCCCTGTTTGAGGCCCTGTACGTGGTCTCCGTGGAGGGCGGCCCCACGG
ATGGGGATGGCGGCATGCTGGGGGGAGGGGGGCAGGGCGCCATGGTGTCT
CCGCGCTCCAGCGTGGAGGCCTTCCAGCGTGCTAACCAGCAGTGCCCTCC
ACGGGTCGTGTGGAGGTATGGTGTCGTATTGAGGTACAGCAGTACGGCAG
TGCGGACGTATCGAGGTATGTATGGTGTCGTATGGAGGTACAGCATTACG
GCAGTGTGGGCGTATGGAGGTCCAGTAGTACAGTGCGAATGTTTGGAGGT
ATGGTGTCGTATGGAGGTACAGCAATACGGCAGTGTGAACGTATCGAGGT
ATGGTGTCGTATGGAAGTACATCAGTACGGCAGTGTGGACGTATGGAGGT
GCAGTAGTACAGTGCAGACGTTTGGAGGTATGGTGTATGGAGGTACAGCA
GTACAGCAGTGTGGACGTATAGAAATACCGTATTGCGGGTGACACAAGAT
ACCACACCCCCTGGACAGATTTTCAAAGCTCGATTCGATTCCCCCCAGCA
AGGAGAGTGACAGTGCCGAAAGGGGACGGCGTTGGAATGATCTAGTTGAG
GGGGGATGTCCGAAACCGTGTCGTTTGGCGCTGGCACCCCCCTCTTCGTT
GCGGAGTAATGGAGCTCCTGAAGTAGGTCCAGGGGGTGTGGCAGTATCTT
GTGTGTCACCTACGGTACAGCAGTGTGGACGTATGTAGACGGTACAGCTC
AGGAAGGGGGCACAATACAGCAGTAGTTGAGGGGGGCCTGCCTGTCGTGG
CGTGGTGGGTACCTACCCACCGCAGTACATGTTCCCATCTGTCGTCCACG
ATGGTGCGTGCGCACACTGTGCTTTTTATGGAAACGTCAGCGGAACGCCT
TCGTGAAGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGTA
CCTCTCAATGTCCGTACATACTGATCAAACACTTGATGCGGTCAATCCCC
GTGGTCACAGGCTAACTTATACCCAAGAAAAGGTACACGAAAAATAAAAT
GGACCCGAAGGGCCAGCAAGGCAACAATAAAACAGATATAGAATCTGGAG
CCCCCCACTCCCCTCTACACGCTATGTGAGGTAAAAATAATTCCTGCAAT
TCCTGTCTGTATAGGAAATAGCAAGGGGGCATGCGGGCTGCGACACCTCA
CACTAATGCCACCAAACTTACTTAGGCCAAAATCGGAGGAGGGGGGGGGT
TATACTAATTCCTATATATGTGTTTTGGGGGGGACAGCAGCCTAGATTTT
TAAGGGGGCGCGGATCCCCCAAACGGATCCCCCCTATACTATTCCCCATA
TGTTTTACCAACTGGACAAGGCAAGGCAAAAAAACGTGGGACCGGAGGGG
GGGGTGGCGTAAGTGCGAGGTATTGCAGCCCGCATGCCCCCTTGGAAAAC
TTCAAGTAATAAACAGGGGTTCCGTAAACCTAAACCTAACCCCAAACCGA
CCCCCCGTGAGCCATTTCCATACTTTCAGACCAATGTTTATGGTGGGCCA
ATCTTAACCAAATTCTTGATTTTTGGTTTGGGGGGGGGGGGGGGGCCAAT
CAAAGAAAATTTATTTTTTATTTTTGGTTNNNNNNNNNNTAACAAATGTT
TTATGGGGGGGCAAATTTTAAAACATTTTTTTTTTTTTGGGGGGGGGGGG
GGGGGGGGGGTCAATCTAAGATATACTATATTTTCATGTACGCTTCCTAT
GGGGCGAAATCTGCTGAATCTTGCCCCCAAATCTTGGCCCTATTTTGGAA
TCGGATCAAAAAGCTTGCTCTCGCCAAGATCGGTGTGGCTGCAGGGCCTG
ATCAAATCTTGTTTGGACGGGGGGCGGTGCGGCCGAACCCAGCCGACACG
ATGAGCGAGTATGACCTGAGTTCTGAACGTATCGGTCCCACCAAGGGCTC
CCAGCAGCCCTTGGCTGACGGTGCTGCTGTCCTGCCCACCCAGTTTGACA
TGATCGCTGGGAAGGCGAGCGTACCGCAGGTGACACAAGATACCACACCC
CCTGGATCGAATTTTGGAGCTCCATTACTCCGTAACGAAGAAGGTGCCAG
CTCCAAACGACACATTTTCGGACAGCCCTGGACTAGATCTTTCCAAAGCC
ACCCCTTTCGGCACTGTCATTCTTCTCGCTGGGGAGGAATCGAGCTTTGA
AAATCTGTCCAGGGGGTATGGTATCTTGTGTCACCTACGGTAATAAAGCG
TTTTGAATGACGCACAGCAACAAGAGGTCAAACCGCCTCTATTCAGCGAA
AAATGGAACAATTTTGCAGAGACGTGAGGTCACCGCTCTCGAGGTCTCCA
TCCCTTGAGCACGGATCAAAGGGAAGCCCGGGCGGGATGTGCTCTCTGTT
TACTGTTCTGTGTCGGTGGAGTGTAGCTTAGTTGTGCGTTCGCTAAATGG
ACAGAGAGAAGGATGTGCGTGTACCCAAGCTAAATGTTACAAGTGGTTTT
CAGGTGACCACTAGACCAGTCTATTTTCAAGTGTTCCACACAACATGCGA
CGCTTCTCTCTGTCGATTCAGCGAACGCACAACGAAGCTACGCTCCACCG
ACACAGAACAGTAAACAGAGAGCACATCCCGCCCGGGTTCCCTTCGATCC
GTGCTCTACGGACCGAGAACTCGAGAGCGGCGATCTCACGTCTCTACCAT
TTTTTGCTGAATAGAGGCGATTTGACTTCTTGTGCTGTGCGTCATTCAAA
ACGTATTTTTCACGCTCACCTCCCCAGCGATCATGCCCAACTGGTGGGCA
GAACAGCAGCACCGCCAGCCAAGGGTTGCTGGGATCCCTTGGTTGGAGCG
ATACGTTCAGAACTCAGGTCGCACTTGCTGATTCTGTGGACCGAGGTGTA
TGTATGCCCCCACCCCCCAAACCAACATCAAGATTTGTTTTCCCCACACA
CACGACACGTTCGAAACCTTGAGGTGGGGTCCATATCCACACAGAAGGGT
TCCTTTCCCCAAGGCCCCCACTCCCCCCGTCTGCAGTGCTTGCCTACTAT
TTTTGTCGCGAGAAGTTATGTGCATACCTAACCCTGTGTATGTTGTTGTG
TCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTA
CACCTTGCGGTGTACTTAAAGGTGCTTCACTTTCCAGTGCATTTGTCTGT
ACAACTAGAACCAACCGGGGTCACACAGGAGGAGGTGAACACTGGGGCTT
TTTCTTCTTTCTAATTTTCTTTTTTTTTGCCCCACCTTCCTCCTGCGGTT
CTTGCCTAAGCCTCGTCTTTTATTTTGTCTAAAAGAACCTCAGGAGGAAG
GTGGGGCAAAAAAAAAAAAAAGAAGAAAAAGCCCCAGTGTTTACATACAA
CCTCCTGTGTGACCCCGGCGGAGACGTCATGCTGTACAAAGAAGCAGCAC
CGCAACGTGCATGTTGTACACACACACCGAAACGTGTGGCAGGCGCCCGA
ATAAATGGGACGAAAAAACAAAAAACAAAAAACAAATATCGTAGGTACCT
CCTTTCGCATGTTTTATTTTTTTTTATTTATTTATTTTGCAATATTTGTA
CATAGGTTTCCACCCTTGGGCGAAGAAGACGAGACTGGCACTACTGCGGT
GAGGCAGGAGGACGTCCTCAAATTTTGCTTCCCCGACAAGGAAGCCATCA
AGCCCGTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12974:1462..5222+

>mRNA_L-elsbetiae_contig12974.2351.1 ID=mRNA_L-elsbetiae_contig12974.2351.1|Name=mRNA_L-elsbetiae_contig12974.2351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig12974:1462..5222+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACGTTCCCCTGTTTGAGGCCCTGTACGTGGTCTCCGTGGAGGGC
GGCCCCACGGATGGGGATGGCGGCATGCTGGGGGGAGGGGGGCAGGGCGC
CATGGTGTCTCCGCGCTCCAGCGTGGAGGCCTTCCAGCGTGCTAACCAGC
AGTGCCCTCCACGGGTCGTGTGGAGGTATGATGGCGACGTTCCCCTGTTT
GAGGCCCTGTACGTGGTCTCCGTGGAGGGCGGCCCCACGGATGGGGATGG
CGGCATGCTGGGGGGAGGGGGGCAGGGCGCCATGGTGTCTCCGCGCTCCA
GCGTGGAGGCCTTCCAGCGTGCTAACCAGCAGTGCCCTCCACGGGTCGTG
TGGAGGTATGACGAGACTGGCACTACTGCGGTGAACGAGACTGGCACTAC
TGCGGTGA
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