mRNA_L-elsbetiae_contig12942.2333.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12942.2333.1
Unique NamemRNA_L-elsbetiae_contig12942.2333.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12942.2333.1 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.650e-30
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 RIRRLANEALVDIFRGLGGNGWRNKFGWLTPGTDVKQWHGVTVNSGSLVSLNLISNDLEV 180
            +IRRLAN+ALVD+F  LGG+ WRNK GWLTPGTDVK+WHGVTVN+GSLVSLNL+SNDLEV
Sbjct:   12 QIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNAGSLVSLNLMSNDLEV 71
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BLAST of mRNA_L-elsbetiae_contig12942.2333.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.630e-16
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    7 RRLANEALVDIFRGLGGNGWRNKFGWLTPGTDVKQWHGVTVN-SGSLVSLNLISNDLE 177
            RR+AN+ L D++  LGG+ W+ + GWL PG+DV++WHG+T+  SG LVS+NLISNDLE
Sbjct:   33 RRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLE 90
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BLAST of mRNA_L-elsbetiae_contig12942.2333.1 vs. uniprot
Match: UPI00190B71DA (T6SS effector amidase Tae4 family protein n=1 Tax=Adhaeribacter terrigena TaxID=2793070 RepID=UPI00190B71DA)

HSP 1 Score: 49.7 bits (117), Expect = 2.190e-5
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:   22 EALVDIFRGLGGNGWRNKFGWL--TPGTDVKQWHGVTVNSGSLVSLNLISNDL 174
             ALV+++    G  W N   WL  T  TD   WHG+TV++G ++ ++L SN+L
Sbjct:   34 NALVELYNSTEGPNWNNNNNWLNGTSNTDFSSWHGLTVDNGDVIFIDLSSNNL 86
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BLAST of mRNA_L-elsbetiae_contig12942.2333.1 vs. uniprot
Match: A0A401FQW3_9DELT (Uncharacterized protein n=2 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FQW3_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 4.070e-5
Identity = 23/51 (45.10%), Postives = 29/51 (56.86%), Query Frame = 1 
Query:   22 EALVDIFRGLGGNGWRNKFGWLTPGTDVKQWHGVTVNSGSLVSLNLISNDL 174
            EALV ++    G+ W NK GWLT       WHGVTV  G +V + L +N L
Sbjct:  913 EALVALYNSTDGDNWTNKDGWLTDPV-AGNWHGVTVQGGHVVEIELKNNKL 962
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12942.2333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV03_ECTSI5.650e-3081.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ86_ECTSI3.630e-1658.62Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
UPI00190B71DA2.190e-539.62T6SS effector amidase Tae4 family protein n=1 Tax=... [more]
A0A401FQW3_9DELT4.070e-545.10Uncharacterized protein n=2 Tax=Desulfonema ishimo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12942contigL-elsbetiae_contig12942:4461..4640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-13_002040.1
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815476.3924184-CDS-L-elsbetiae_contig12942:4460..46401622815476.3924184-CDS-L-elsbetiae_contig12942:4460..4640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12942 4461..4640 +
1691682916.5443845-CDS-L-elsbetiae_contig12942:4460..46401691682916.5443845-CDS-L-elsbetiae_contig12942:4460..4640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12942 4461..4640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12942.2333.1prot_L-elsbetiae_contig12942.2333.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12942 4461..4640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12942.2333.1

>prot_L-elsbetiae_contig12942.2333.1 ID=prot_L-elsbetiae_contig12942.2333.1|Name=mRNA_L-elsbetiae_contig12942.2333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
RIRRLANEALVDIFRGLGGNGWRNKFGWLTPGTDVKQWHGVTVNSGSLVS
LNLISNDLEV
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mRNA from alignment at L-elsbetiae_contig12942:4461..4640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12942.2333.1 ID=mRNA_L-elsbetiae_contig12942.2333.1|Name=mRNA_L-elsbetiae_contig12942.2333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig12942:4461..4640+ (Laminarionema elsbetiae ELsaHSoW15)
CGGATCCGGCGACTTGCGAATGAAGCCTTGGTGGATATCTTTCGCGGACT
TGGAGGGAACGGATGGCGGAACAAATTTGGTTGGCTGACGCCTGGGACAG
ATGTGAAACAGTGGCACGGGGTCACCGTGAATTCCGGGAGCCTGGTTTCG
CTTAACTTAATCAGTAACGACTTGGAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12942:4461..4640+

>mRNA_L-elsbetiae_contig12942.2333.1 ID=mRNA_L-elsbetiae_contig12942.2333.1|Name=mRNA_L-elsbetiae_contig12942.2333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig12942:4461..4640+ (Laminarionema elsbetiae ELsaHSoW15)
CGGATCCGGCGACTTGCGAATGAAGCCTTGGTGGATATCTTTCGCGGACT
TGGAGGGAACGGATGGCGGAACAAATTTGGTTGGCTGACGCCTGGGACAG
ATGTGAAACAGTGGCACGGGGTCACCGTGAATTCCGGGAGCCTGGTTTCG
CTTAACTTAATCAGTAACGACTTGGAGGTACGGATCCGGCGACTTGCGAA
TGAAGCCTTGGTGGATATCTTTCGCGGACTTGGAGGGAACGGATGGCGGA
ACAAATTTGGTTGGCTGACGCCTGGGACAGATGTGAAACAGTGGCACGGG
GTCACCGTGAATTCCGGGAGCCTGGTTTCGCTTAACTTAATCAGTAACGA
CTTGGAGGTA
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