mRNA_L-elsbetiae_contig12810.2262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12810.2262.1
Unique NamemRNA_L-elsbetiae_contig12810.2262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.760e-28
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLRCLEEGTAGGS 202
            WLTIECTEGKNRQIRKICKYLCLTVNRL RTRYGPFSLGKVR+ GVA VEIPK+F+R LE+G  GGS
Sbjct:  314 WLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGS 378
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.810e-22
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLRCLEEGTAGGS 202
            WLTIECTEGK      ICKYLCLTVNRL RT YGPFSLGKVR+ GVA VEIPK+F+R LE+G  GGS
Sbjct:   33 WLTIECTEGK------ICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGS 91
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.140e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLR 172
            WL + C EGKN QIR++C++L LTVNRL RT +GPF LGK+ S GVA V + + FL+
Sbjct:  231 WLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLK 287
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A2E6X8W3_9PROT (Pseudouridine synthase n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6X8W3_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 2.350e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVE 151
            WLT+  TEGKNR++RK+  +L LTVNRL RT YGPF LGK+R  G+  ++
Sbjct:  137 WLTLALTEGKNREVRKVLAHLGLTVNRLIRTTYGPFQLGKIRRGGIEEIK 186
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A7X4D014_9PROT (Pseudouridine synthase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A7X4D014_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 2.260e-10
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLR 172
            WLT+   EGKNR+IRK+C +L LT NRL RT YGPF LGK+ +  V RV  P+  LR
Sbjct:  190 WLTMSIREGKNREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVERV--PERVLR 244
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A6B1HIP4_9PROT (Pseudouridine synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HIP4_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 2.290e-10
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLR 172
            WLT+   EGKNR+IRK+C +L LT NRL RT YGPF LGK+ +  V R  IP+  LR
Sbjct:  191 WLTMSIREGKNREIRKLCAHLGLTANRLIRTAYGPFQLGKLAAGAVER--IPERVLR 245
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A2E1MRU8_9HYPH (Pseudouridine synthase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E1MRU8_9HYPH)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-9
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLR 172
            WLT+   EGKNR+IRK+CK++ L VNRL RT YGPF L  ++ + +   E+P  FL+
Sbjct:  184 WLTMRLKEGKNREIRKVCKFVGLEVNRLIRTSYGPFDLADLKKEEIR--EVPSVFLK 238
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A371RH26_9PROT (Pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RH26_9PROT)

HSP 1 Score: 62.4 bits (150), Expect = 3.450e-9
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFL 169
            WLTI  +EGKNR++R IC++L LTVNRL RT YGPF LG ++   +   E+P+  L
Sbjct:  189 WLTIAISEGKNREVRAICRHLGLTVNRLIRTSYGPFQLGALKLGEIE--EVPRKQL 242
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BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A2E5HCX0_9HYPH (Pseudouridine synthase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E5HCX0_9HYPH)

HSP 1 Score: 62.4 bits (150), Expect = 3.620e-9
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVE 151
            WL IE +EGKNR+IRKIC+Y  L +NRL RT++GPF LG ++      ++
Sbjct:  198 WLQIEISEGKNREIRKICQYFNLQINRLIRTKFGPFELGNIQKGHFVEID 247
[Close]
BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Match: A0A2E8AI73_9HYPH (Pseudouridine synthase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E8AI73_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 4.290e-9
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:    2 WLTIECTEGKNRQIRKICKYLCLTVNRLNRTRYGPFSLGKVRSDGVARVEIPKSFLR 172
            WL     EGKNR+IRKIC Y+ L VNRL R  YGPFSLG +   GV   EI K FL+
Sbjct:  184 WLKFSLYEGKNREIRKICNYMNLEVNRLIRYSYGPFSLGNLAKCGVK--EISKIFLK 238
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12810.2262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI3.760e-2885.07RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J790_9PHAE1.810e-2274.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDT5_9STRA1.140e-1357.89Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A2E6X8W3_9PROT2.350e-1158.00Pseudouridine synthase n=1 Tax=Magnetovibrio sp. T... [more]
A0A7X4D014_9PROT2.260e-1057.89Pseudouridine synthase n=2 Tax=Rhodospirillaceae b... [more]
A0A6B1HIP4_9PROT2.290e-1057.89Pseudouridine synthase n=1 Tax=Rhodospirillaceae b... [more]
A0A2E1MRU8_9HYPH1.180e-950.88Pseudouridine synthase n=1 Tax=Rhodobiaceae bacter... [more]
A0A371RH26_9PROT3.450e-953.57Pseudouridine synthase n=1 Tax=Parvularcula marina... [more]
A0A2E5HCX0_9HYPH3.620e-952.00Pseudouridine synthase n=3 Tax=Alphaproteobacteria... [more]
A0A2E8AI73_9HYPH4.290e-957.89Pseudouridine synthase n=1 Tax=Rhodobiaceae bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12810contigL-elsbetiae_contig12810:116..2613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size231
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12810.2262.1prot_L-elsbetiae_contig12810.2262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12810 242..2613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.5247781-UTR-L-elsbetiae_contig12810:115..2411622815469.5247781-UTR-L-elsbetiae_contig12810:115..241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12810 116..241 -
1691682912.5621111-UTR-L-elsbetiae_contig12810:115..2411691682912.5621111-UTR-L-elsbetiae_contig12810:115..241Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12810 116..241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.5349514-CDS-L-elsbetiae_contig12810:241..4411622815469.5349514-CDS-L-elsbetiae_contig12810:241..441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12810 242..441 -
1691682912.5707445-CDS-L-elsbetiae_contig12810:241..4411691682912.5707445-CDS-L-elsbetiae_contig12810:241..441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12810 242..441 -
1622815469.54853-CDS-L-elsbetiae_contig12810:2582..26131622815469.54853-CDS-L-elsbetiae_contig12810:2582..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12810 2583..2613 -
1691682912.5789855-CDS-L-elsbetiae_contig12810:2582..26131691682912.5789855-CDS-L-elsbetiae_contig12810:2582..2613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12810 2583..2613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12810.2262.1

>prot_L-elsbetiae_contig12810.2262.1 ID=prot_L-elsbetiae_contig12810.2262.1|Name=mRNA_L-elsbetiae_contig12810.2262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
LADHRVHRGKKPANPQDLQVPVPDREPAEQDPLRPLQPRQGPVRRGRPRG
NPEVVSAVFGGGHRRRIIAGKRRRRR*
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mRNA from alignment at L-elsbetiae_contig12810:116..2613-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12810.2262.1 ID=mRNA_L-elsbetiae_contig12810.2262.1|Name=mRNA_L-elsbetiae_contig12810.2262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2498bp|location=Sequence derived from alignment at L-elsbetiae_contig12810:116..2613- (Laminarionema elsbetiae ELsaHSoW15)
CTGGCTGACCATCGAGTGCACCGAGGGAAAAGTGAGTGTGGAGATGATAG
CTCGTTTACGTTGTCGACAGCTGTTAGGCTGTTATTTATTCGCTTTTCTG
GGCACCGAAGGAGAAGTGCTTGCGGAAATACCGGCTAATTAATGATTTGA
CAGTCTTTTATCGTCTTTTCCTTGAATGTCTACTCAAGCCCCAAATAAAG
GGTTGTCCTCCCGGACTTCCCCGGAGGATGCCATACCGGTGTGGTGTGGC
TCGAAATACGGCTATCTCCCCCCGATTCCTCGACAACTAGTTTTTTCTTT
GAAAAAAAAAACAGTTCCGGGGATCGCACTCAGGCCGGATCTTATGGCGA
CGAAATTTTGCCACGAAACGGAGTTTTTATTCTGGTCCATGGCTCCCCCT
TCGGCGGAGGGAACGGGGTCGGCGAGACACGCACGGATTTTCTTAGGTCG
GCAGAAAAAACACGGCCACCCTGCTGTTTCAGGCCCTATGTAGGTCACGG
ATTGCCGCGAGACCTTGTAGCCCCATACCTGTGGGAGTCTTGAGATACGT
TTTTCGTGGTCATAGGCTTCGTGTGGTTCGAGGGGCGGTCGGCGCGCGAT
CGAAAATCACATTTCGTGTGACCAATCCGTCCGCTATATGACGCGGTTTT
CGGGTGCAAATTTCGTGTGACTTTTTGCCAGAAGGATCTGTATTTTGTCC
ACAACATCAAATGGTCTTCGCAATAAAAAAATCGCCTGACGAAAAGGACT
AGCTGCGAAGAATCCTACGAGCGTGGAGCGTCGATCTGCAAGTTTTTACG
GCAATCCGTCAACTATGGCCGGAGAGTTCATGGATGCTGCTGTGACTGTA
GGGCGTGTCTCCAGTTCGTGGGGGTTCGAGGCCCCAACACCCCCCCCCTT
CGATTCAGGGGGCCCGCGCCAGAGCGAAAATCCGTTTCGCGGCGAAATTT
CGTCGCCACACGATCCGGCCTCAGGGCTCGGTTGCCACCGTCTTTTTTCA
AATCGGTTGGTCAGTCTTTCGCGTATAAAACAAACCAAGTTTTTAGGGCT
TTTGTCCGAGAAACAGCGAAGGAAGAAAAAAAAAAACACTCGTCCACCAG
AACATGCACCTGGAAACAGGGCGTTTGCCTGTATTTTTAGATTTCGGAAT
ACACTCCTGTGTGCAGAGTAAAGTTGACATCCGTGATTGGAATTGGTTTC
GAACGATTGTTGTGCGCAGACGATCGCTCTGGAGGTCTAGTTGGTACCCC
CGAACACCTTCTACCAGGTACGTCGCGAGTTCGAAACTCAGCAGGAGCGA
ATTTTTCTATGCGAAGTGAGTTTTTTCTCTCGCTTCCGTTCCTTTCAGTG
GATAGTGTACACAAACTTCGACCTCACCGTTGACGAGGGAAAGGAACGGC
TAAACCTGTCTTGCGATACAAATGGTAGGCGAGCACCGCAGACGGGAGGA
GTGGGGGCCTTGGGGAAAGGAACCTTCCTGTATGACCACGGTTGGTACTC
TGTGAAGATGTCATCGTGACGGGGAGCCCATCGAGCACTGAAAATGAATG
TGAAGAAACAAAATAACACACGTCAATTCAACCCCCACAGTTTCGCTGCC
CAGACCCGAGGGAAATTGTCGCTATGTTTGTACGCCAGATAACGTATGTC
GGCCCCCTCCTTACCTCTGGATTGTTCGTTATTGTCCCCCCTCCACCTTG
TTGTACGTATATCCCTCTCTCTCCTCCCCTTCAGCCTTCTGGCACTATTG
TTGGTGGTCATACATAGAAATGTGGACAACAAAACAACGCCCCGAGGCCG
TCTCCGCCTTGTCTTCGGCAATCTAGCGCGTGCTCCAGCCGGCTTTGCCT
GGTTAGTTAGAGCGTGGATGCGACAAAGCACGCCTAGCGGCCCATACGCT
GACGGCGAAGGTATCCCTCCCTCCCTCTCCCTGTGAACGGTGGATGCCGC
CCCCACTACTATGGCAACCAGAAACCCCACAACAACAGAAAATATCAACA
AAAGTCTACCATACATGGCTGTAAAAGAACTGCAACAATACAAGGGGGAT
CATTGAGATCTTTCACAATTAGAGTTTGAGAATCTTGACATTTCCCACCC
CCAACACTAACTACCTACCACCCCCCGCTCGTGTTGTTTCTCTTTCGCCT
GGTTCACGGACCGCCTGGACAGAACCGGCAAATCCGCAAGATCTGCAAGT
ACCTGTGCCTGACCGTGAACCGGCTGAACAGGACCCGCTACGGCCCCTTC
AGCCTCGGCAAGGTCCGGTCCGACGGGGTCGCCCGCGTGGAAATCCCGAA
GTCGTTTCTGCGGTGTTTGGAGGAGGGCACCGCCGGAGGATCATCGCGGG
CAAGCGGCGGCGGCGGCGGTAGTGGCAGGCGAATGGCAAGGATGGAACAG
GGAAGCGCCGGGAGGCGGAGGCTAGCGGTGTGTCGCCGCCGCGGCAGGGG
GACTCGTCTTTGAGAGGGGAAGGGTGGGACAGCAGGAGGAGGAGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12810:116..2613-

>mRNA_L-elsbetiae_contig12810.2262.1 ID=mRNA_L-elsbetiae_contig12810.2262.1|Name=mRNA_L-elsbetiae_contig12810.2262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig12810:116..2613- (Laminarionema elsbetiae ELsaHSoW15)
CTGGCTGACCATCGAGTGCACCGAGGGAAAACTGGCTGACCATCGAGTGC
ACCGAGGGAAAAAACCGGCAAATCCGCAAGATCTGCAAGTACCTGTGCCT
GACCGTGAACCGGCTGAACAGGACCCGCTACGGCCCCTTCAGCCTCGGCA
AGGTCCGGTCCGACGGGGTCGCCCGCGTGGAAATCCCGAAGTCGTTTCTG
CGGTGTTTGGAGGAGGGCACCGCCGGAGGATCATCGCGGGCAAGCGGCGG
CGGCGGCGGTAGAACCGGCAAATCCGCAAGATCTGCAAGTACCTGTGCCT
GACCGTGAACCGGCTGAACAGGACCCGCTACGGCCCCTTCAGCCTCGGCA
AGGTCCGGTCCGACGGGGTCGCCCGCGTGGAAATCCCGAAGTCGTTTCTG
CGGTGTTTGGAGGAGGGCACCGCCGGAGGATCATCGCGGGCAAGCGGCGG
CGGCGGCGGTAG
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