mRNA_L-elsbetiae_contig12804.2256.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12804.2256.1
Unique NamemRNA_L-elsbetiae_contig12804.2256.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12804.2256.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.950e-24
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 MGTEYSLVGVSYHVALGGGPSRNHFVSQIRARGRWHKYDCLLGGVVLSSDDFDSAWNSSS 180
            MG  YSLVGVSYH+A GG   +NHFV+Q+R RGRWHKYDCL GG + SSD FD+ WNSSS
Sbjct:    1 MGAAYSLVGVSYHIAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSS 59
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BLAST of mRNA_L-elsbetiae_contig12804.2256.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.650e-22
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 MGTEYSLVGVSYHVALGGGPSRNHFVSQIRARGRWHKYDCLLGGVVLSSDDFDSAWNSSS 180
            MG  YSLVGVSYH+A GG   +NHFV+Q+R RGRWHKYDCL GG V S+D FD+ WNSSS
Sbjct:    1 MGAAYSLVGVSYHIAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSS 59
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BLAST of mRNA_L-elsbetiae_contig12804.2256.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.000e-21
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 MGTEYSLVGVSYHVALGGGPSRNHFVSQIRARGRWHKYDCLLGGVVLSSDDFDSAWNSSS 180
            MG  YSLVG+S  +ALGGGP+RNHFVSQ+  RGRWHK DCL GG+V SSD F S W+ SS
Sbjct:  102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSS 161
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BLAST of mRNA_L-elsbetiae_contig12804.2256.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.160e-6
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   58 PSRNHFVSQIRARG---RWHKYDCLLGGVVLSSDDFDSAWNSSS 180
            P R  F S    RG   RWHKYDCL GG+V SSD +DS W+ SS
Sbjct:  560 PDRIFFRSSCVFRGLCGRWHKYDCLQGGIVTSSDAYDSGWHVSS 603
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12804.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSJ9_ECTSI5.950e-2470.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7U5_ECTSI1.650e-2270.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE8.000e-2168.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE6.160e-656.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12804contigL-elsbetiae_contig12804:3723..3902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.5212457-CDS-L-elsbetiae_contig12804:3722..39021622815467.5212457-CDS-L-elsbetiae_contig12804:3722..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12804 3723..3902 -
1691682912.279503-CDS-L-elsbetiae_contig12804:3722..39021691682912.279503-CDS-L-elsbetiae_contig12804:3722..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12804 3723..3902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12804.2256.1prot_L-elsbetiae_contig12804.2256.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12804 3723..3902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12804.2256.1

>prot_L-elsbetiae_contig12804.2256.1 ID=prot_L-elsbetiae_contig12804.2256.1|Name=mRNA_L-elsbetiae_contig12804.2256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MGTEYSLVGVSYHVALGGGPSRNHFVSQIRARGRWHKYDCLLGGVVLSSD
DFDSAWNSSS
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mRNA from alignment at L-elsbetiae_contig12804:3723..3902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12804.2256.1 ID=mRNA_L-elsbetiae_contig12804.2256.1|Name=mRNA_L-elsbetiae_contig12804.2256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig12804:3723..3902- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAACCGAATATTCTTTGGTCGGTGTATCTTACCACGTGGCGCTTGG
TGGCGGCCCATCTCGCAATCACTTCGTATCTCAGATACGTGCGAGAGGGA
GATGGCATAAATATGACTGCCTTCTTGGCGGCGTTGTTCTTTCATCTGAC
GACTTCGACTCCGCCTGGAACAGCTCATCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12804:3723..3902-

>mRNA_L-elsbetiae_contig12804.2256.1 ID=mRNA_L-elsbetiae_contig12804.2256.1|Name=mRNA_L-elsbetiae_contig12804.2256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig12804:3723..3902- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAACCGAATATTCTTTGGTCGGTGTATCTTACCACGTGGCGCTTGG
TGGCGGCCCATCTCGCAATCACTTCGTATCTCAGATACGTGCGAGAGGGA
GATGGCATAAATATGACTGCCTTCTTGGCGGCGTTGTTCTTTCATCTGAC
GACTTCGACTCCGCCTGGAACAGCTCATCTATGGGAACCGAATATTCTTT
GGTCGGTGTATCTTACCACGTGGCGCTTGGTGGCGGCCCATCTCGCAATC
ACTTCGTATCTCAGATACGTGCGAGAGGGAGATGGCATAAATATGACTGC
CTTCTTGGCGGCGTTGTTCTTTCATCTGACGACTTCGACTCCGCCTGGAA
CAGCTCATCT
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