mRNA_L-elsbetiae_contig1280.2253.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1280.2253.1
Unique NamemRNA_L-elsbetiae_contig1280.2253.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1280.2253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1280contigL-elsbetiae_contig1280:18371..19226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size856
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1280.2253.1prot_L-elsbetiae_contig1280.2253.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1280 18468..18935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.3145986-UTR-L-elsbetiae_contig1280:18370..184671622815467.3145986-UTR-L-elsbetiae_contig1280:18370..18467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 18371..18467 +
1691682912.1755593-UTR-L-elsbetiae_contig1280:18370..184671691682912.1755593-UTR-L-elsbetiae_contig1280:18370..18467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 18371..18467 +
1622815467.3394365-UTR-L-elsbetiae_contig1280:18935..192261622815467.3394365-UTR-L-elsbetiae_contig1280:18935..19226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 18936..19226 +
1691682912.1930163-UTR-L-elsbetiae_contig1280:18935..192261691682912.1930163-UTR-L-elsbetiae_contig1280:18935..19226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 18936..19226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.3284154-CDS-L-elsbetiae_contig1280:18467..189351622815467.3284154-CDS-L-elsbetiae_contig1280:18467..18935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 18468..18935 +
1691682912.1845167-CDS-L-elsbetiae_contig1280:18467..189351691682912.1845167-CDS-L-elsbetiae_contig1280:18467..18935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 18468..18935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1280.2253.1

>prot_L-elsbetiae_contig1280.2253.1 ID=prot_L-elsbetiae_contig1280.2253.1|Name=mRNA_L-elsbetiae_contig1280.2253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
MKNWGRLVLFFPSTLPFSFTLPFIICIFWFLAVRRTRLTGGIIFIALACE
RRAINYLFSAYLFHCKCMFSIPFECFDTLRPVPRATSFDSPVEDFKVTLQ
RRFVANEIAKREAVVSSPFQGRQARRCDGPRCARVESQGFFVCEELIENV
CTSHF*
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mRNA from alignment at L-elsbetiae_contig1280:18371..19226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1280.2253.1 ID=mRNA_L-elsbetiae_contig1280.2253.1|Name=mRNA_L-elsbetiae_contig1280.2253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=856bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:18371..19226+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGAAGGGAGGGGTCGGGGCAGCTTTAGGCACAGCAGCAGCAGGAAG
TGGTACAGTTGGTGGAGGGGTTGGCACAGGAGGCACATGTCAGTTCAATG
AAGAACTGGGGCCGGCTGGTTTTGTTTTTCCCTTCTACTTTACCATTTTC
TTTCACTCTCCCGTTTATTATTTGCATTTTTTGGTTTTTGGCGGTGAGGA
GAACCAGACTTACCGGAGGTATTATATTTATAGCTCTCGCATGCGAGCGG
AGAGCCATAAACTACTTGTTTTCAGCCTACCTTTTTCATTGTAAGTGTAT
GTTTTCCATTCCTTTCGAATGCTTCGATACACTTCGACCTGTCCCACGGG
CAACCTCTTTCGACAGCCCAGTTGAAGATTTTAAGGTCACCCTTCAACGC
CGCTTCGTAGCAAATGAAATTGCCAAGAGGGAAGCCGTTGTCAGCAGCCC
ATTTCAGGGACGACAAGCGAGGCGATGCGATGGCCCCCGCTGTGCACGCG
TAGAGAGCCAGGGGTTTTTTGTTTGCGAGGAGTTGATCGAGAACGTCTGT
ACGTCCCATTTTTGATGCGTGGTAGAAGGCTCTGTTGTTCAAAACCTCGT
CGGTTTTCAGTGTTGGTAGGATGCTCTGTGCCCTGCCGCATGACGCGACG
GATTGGCATACAGATGTTTTCCTGCAAAGACCATGTGCTTTTCTCCATGT
TTTGTTGACGGGCGCGATATATATATATGCATTTGTAGGACAGAAGGAGA
GGATATGTGAGACAATGTCGTGAGTGTTCATGTAATATACTGTGTGTACA
ACATTTTTAATTGATATAGGCGAGGTGAATTCAATGCGCTGACGTGGCGA
ACTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1280:18371..19226+

>mRNA_L-elsbetiae_contig1280.2253.1 ID=mRNA_L-elsbetiae_contig1280.2253.1|Name=mRNA_L-elsbetiae_contig1280.2253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:18371..19226+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACTGGGGCCGGCTGGTTTTGTTTTTCCCTTCTACTTTACCATT
TTCTTTCACTCTCCCGTTTATTATTTGCATTTTTTGGTTTTTGGCGGTGA
GGAGAACCAGACTTACCGGAGGTATTATATTTATAGCTCTCGCATGCGAG
CGGAGAGCCATAAACTACTTGTTTTCAGCCTACCTTTTTCATTGTAAGTG
TATGTTTTCCATTCCTTTCGAATGCTTCGATACACTTCGACCTGTCCCAC
GGGCAACCTCTTTCGACAGCCCAGTTGAAGATTTTAAGGTCACCCTTCAA
CGCCGCTTCGTAGCAAATGAAATTGCCAAGAGGGAAGCCGTTGTCAGCAG
CCCATTTCAGGGACGACAAGCGAGGCGATGCGATGGCCCCCGCTGTGCAC
GCGTAGAGAGCCAGGGGTTTTTTGTTTGCGAGGAGTTGATCGAGAACGTC
TGTACGTCCCATTTTTGAATGAAGAACTGGGGCCGGCTGGTTTTGTTTTT
CCCTTCTACTTTACCATTTTCTTTCACTCTCCCGTTTATTATTTGCATTT
TTTGGTTTTTGGCGGTGAGGAGAACCAGACTTACCGGAGGTATTATATTT
ATAGCTCTCGCATGCGAGCGGAGAGCCATAAACTACTTGTTTTCAGCCTA
CCTTTTTCATTGTAAGTGTATGTTTTCCATTCCTTTCGAATGCTTCGATA
CACTTCGACCTGTCCCACGGGCAACCTCTTTCGACAGCCCAGTTGAAGAT
TTTAAGGTCACCCTTCAACGCCGCTTCGTAGCAAATGAAATTGCCAAGAG
GGAAGCCGTTGTCAGCAGCCCATTTCAGGGACGACAAGCGAGGCGATGCG
ATGGCCCCCGCTGTGCACGCGTAGAGAGCCAGGGGTTTTTTGTTTGCGAG
GAGTTGATCGAGAACGTCTGTACGTCCCATTTTTGA
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