mRNA_L-elsbetiae_contig1280.2252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1280.2252.1
Unique NamemRNA_L-elsbetiae_contig1280.2252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1280.2252.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K)

HSP 1 Score: 155 bits (391), Expect = 2.440e-35
Identity = 93/233 (39.91%), Postives = 133/233 (57.08%), Query Frame = 2 
Query: 2678 DFPTDPSLKKFSVVSGPVSLKMLWPGVSGATKYQVGFSEGVPGANPVTKKARIHRAGVTTTTIYNLQPETTYSLYLYYSTDDSDPSVLLGEVLAVTLVDNPTNYTLASLLDESGAVDLREYDQDSLDRITENMNDILPTGTKIRLPAQGRGVRAFKNAKFIKTGDTVDVENDVSIAFSFTETAGTGQNATLNLSDNSAVVVSFDEATSGITIGDVFYSPGDTFVMDNQKVTVL 3376
            D P  P L   SVV  P+S+ + WP VSGAT Y V +S G   A   T  A    A     ++ NL  +T YS+Y YYS DD+DPSV +     +TL +  +N+ ++S  DE G  DLR    +SL  + + +NDI  TG  + L  +G+G       KF+K GDT  +++ VSIA  F+ +AG GQ+ TL L+D + V V++D+ T  + IG   Y+ GD+ V+D QKVT+ 
Sbjct:  386 DLPDAPGL--VSVVPRPMSIDLTWPAVSGATAYGVKYSVGEMDAEAKTTSAASTTA--LRHSVRNLLSQTLYSVYTYYSMDDTDPSVPMSSGQYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGET---KTKFVKRGDTAAIDDGVSIAMPFSASAGPGQSVTLALTDATTVAVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTIF 611
[Close]
BLAST of mRNA_L-elsbetiae_contig1280.2252.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC)

HSP 1 Score: 99.8 bits (247), Expect = 1.780e-17
Identity = 68/211 (32.23%), Postives = 106/211 (50.24%), Query Frame = 2 
Query: 2780 VGFSEGVPGANPVTKKARIHRAGVTTTT----------IYNLQPETTYSLYLYYSTDDSDPSVLLGEVLAVTLVDNPTNYTLASLLDES-GAVDLREYDQDSLDRITENMNDILPTGTKIRLPAQGRGVRAFKNAKFIKTGDTVDVENDVSIAFSFTETAGTGQNATLNLSDNSAVVVSFDEATSGITIGDVFYSPGDTFVMDNQKVTVLD 3379
            V F E VPGA       ++   GV TT             +LQ E+ Y   +Y  TD      L  +    TL +  +NY+      E     DL  +D+D++    E MN++  TG  I +P         K  KF+K G +V ++ + ++   F ET G+ Q A+L LSDNS+V +++DE    I IG V YSPG++ ++D+QK+T+++
Sbjct:  443 VKFGE-VPGATQYRLTKQLSPDGVETTVDTDFSTFEKRAESLQSESVYVFRVYSRTDPESEYTLAYQSSTTTLANVSSNYSAGDYKAEGEDQFDLSSFDKDTMANFHEVMNEVFDTGDAIVIPIGSE----TKKTKFVKLGGSVPIDGESAVLIPFLETGGSAQTASLTLSDNSSVTLTYDETAGTIGIGGVDYSPGESTIVDSQKLTLVE 648
[Close]
BLAST of mRNA_L-elsbetiae_contig1280.2252.1 vs. uniprot
Match: B5LWG3_9PHYC (Putative LamG-like jellyroll protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG3_9PHYC)

HSP 1 Score: 82.8 bits (203), Expect = 1.360e-12
Identity = 54/178 (30.34%), Postives = 98/178 (55.06%), Query Frame = 2 
Query: 2852 TTTTIYNLQPETTYSLYLYYSTDDSDPSVLLGEVLAVTLVDNPTNYTLASLLDESGAVDLREYDQDSLDRITENMNDILPTGTKIRLPAQGRGVRAFKNAKF--IKTGDTVDVENDVSIAFSFTETAGTGQNATLNLSDNSAVVVSFDEATSGITIGDVFYSPGDTFVMDNQKVTVLD 3379
            TT+ +YNL P TTY+  LY STDD + ++   E +  TL D P N  ++  L  +G  +  + ++ + + +  ++++IL TG  I +         F N  F  +  G T ++ +   I   F  + G+ Q+ATL LSD + V++++D++ + I +  +    G+TF++D +KV+V D
Sbjct:  249 TTSIVYNLTPSTTYTFRLYRSTDDVNYTLDRSEDVT-TLDDTPANSNMSIFL-TNGVYNFSQLEETTQEILKNHIDEILVTGDSIIIDND-----EFDNQAFFAVARGTTSEIPDSKPILLLFNPSKGSSQSATLELSDATNVIITYDDSVNSIVVDGITRFVGETFILDGKKVSVHD 419
[Close]
BLAST of mRNA_L-elsbetiae_contig1280.2252.1 vs. uniprot
Match: A0A6C0C5N7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0C5N7_9ZZZZ)

HSP 1 Score: 61.2 bits (147), Expect = 3.310e-7
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = -2 
Query: 4106 SIPYEFLPLAVSLVYGIAYTFVGTSSDETHSDRRTRVKKLMVVGAFTGLCLSAVGRFGLNLPTKMFGMATEKAYTVHLVAPVLYMIIF 4369
            S+PYE  P+ + L+YGI +  +       + +  +     +VVG   G+ LS +GRFGL+LPT++F      +Y VH+ A ++Y IIF
Sbjct:   39 SVPYELFPIFIPLLYGI-FGVINYYIISNYGNNYS-----IVVGIVFGILLSIIGRFGLDLPTRLFNFTKNTSYKVHIYAIIIYAIIF 120
[Close]
BLAST of mRNA_L-elsbetiae_contig1280.2252.1 vs. uniprot
Match: A0A6C0C319_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0C319_9ZZZZ)

HSP 1 Score: 57.8 bits (138), Expect = 1.180e-5
Identity = 48/180 (26.67%), Postives = 80/180 (44.44%), Query Frame = -1 
Query: 3477 SISAAIVAMNTLPGKKMQMVG----------GIPLFTLGWV--AIILGFLNNGTRAQKHRKSLAVASVGVYAAAMLSRILMDGGKTGVPLHASKMLFLGCWLVVGLLIGMKKDVAIQEGELSEEVHSPLIHGLGFLPPALVVLSMMSVNKMERPRGMASGPGMPVFMLAWVILSLVNSVR 3980
            SI+A +V    +     + +G          G+ +F +GW+  A IL         + ++    + S+G+  A M+ +  M   +T  P     ++F   W+++GL +G           LS           G     LV+LSMM +   +R   +  GPGMP+F++AWVI  +VNS R
Sbjct:   12 SIAAGLVIFGVVIKNSFEQLGFPNHPIGKPIGMGMFIMGWIYTAYILSI------NKPNKLMFILPSLGIVFAVMMMKQYMVKKQT--PPVVFPLIFALSWIILGLNVG---------NHLSGNQKY-----FGLFASFLVLLSMMKLLPFQRKNKIVDGPGMPLFVIAWVIFIIVNSNR 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1280.2252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q8QNM5_ESV1K2.440e-3539.91EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
B5LWE4_9PHYC1.780e-1732.23Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWG3_9PHYC1.360e-1230.34Putative LamG-like jellyroll protein n=1 Tax=Feldm... [more]
A0A6C0C5N7_9ZZZZ3.310e-736.36Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0C319_9ZZZZ1.180e-526.67Uncharacterized protein n=1 Tax=viral metagenome T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1280contigL-elsbetiae_contig1280:13616..18288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size4673
Cds size2595
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1280.2252.1prot_L-elsbetiae_contig1280.2252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1280 13718..16312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.2395692-UTR-L-elsbetiae_contig1280:13615..137171622815467.2395692-UTR-L-elsbetiae_contig1280:13615..13717Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 13616..13717 +
1691682912.1395683-UTR-L-elsbetiae_contig1280:13615..137171691682912.1395683-UTR-L-elsbetiae_contig1280:13615..13717Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 13616..13717 +
1622815467.2659106-UTR-L-elsbetiae_contig1280:16312..182881622815467.2659106-UTR-L-elsbetiae_contig1280:16312..18288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 16313..18288 +
1691682912.1649065-UTR-L-elsbetiae_contig1280:16312..182881691682912.1649065-UTR-L-elsbetiae_contig1280:16312..18288Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 16313..18288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.2523837-CDS-L-elsbetiae_contig1280:13717..163121622815467.2523837-CDS-L-elsbetiae_contig1280:13717..16312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 13718..16312 +
1691682912.1506288-CDS-L-elsbetiae_contig1280:13717..163121691682912.1506288-CDS-L-elsbetiae_contig1280:13717..16312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 13718..16312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1280.2252.1

>prot_L-elsbetiae_contig1280.2252.1 ID=prot_L-elsbetiae_contig1280.2252.1|Name=mRNA_L-elsbetiae_contig1280.2252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=865bp
MDILEMADQYHNFENFYSDTGGSNTLVNDGSHIPLGEEPYLLMPTLTYGT
HWTFQAIVKSTSLDKQCLCSIADGTGQRYFDVHIEGGNTIILFYEGIETS
LVYNTASTPIDDFVHFGIQVGSKALKVVANGATKVYNASLALTPRSSTHP
LRIMRPAHVDDNYFNGAILSIMVITISHIYYSDTYTPVTTPYVSSDGKTV
AAGIGPFDLIVTPRQSTVTTGPAAKWHSFSGYSDTLLLGTITDTWAGDST
KKIGTLEFGQTKVGFSQITGPYKNLAARGAHYFPQINAYVAVNADIGQVL
SIDIDSRQGTAVSTGGGTYSFGRGDFKNKYFFGAKISSGGKNQIFRMDPD
GTNEIAVDSETFLGTDDALYGFCLNEDDSRVFFHDKGTSQLRSIDYDLVS
NFETHFKGSEFGSLDYCQGYIYYMGPDGENAAQIYRYNPVTDEKEAIYGV
YETLRAHRYGHSHLFIHRASNSMFLSGTKFQHVTPTSFDFTTPYMFEKSS
RVGSFTFRWEPIENAVSYNVIQNGVVIGNTTSTEFEATGLGVRNAKYSFT
LDYSTSSDPTTFVQARYHYIDYIAKLVVSNSTPFMPDNWKKYSNFLGAVD
PYHPSNIFFGISSNPASLQKYNIETNAYTKVADWFPNIRTGSVYARSWIT
RRVFVVINSRPTVVYDAGVDCERMALFATGEQFMDDPDSLVFTAPANISC
IASTFHEDRLIYGTNNSDISVSVNGSGDTFICSTGNSASGFVAIDPWDSS
TLVYSNSGKLAHRNLQTGVESISLTTDHRGTLEARVLNGIVYFVGRHSSY
GVIRERIDGTDHFTSGPLVRADGKSVPNYTTGFCESDCHRLREQVVNRHR
HDRRWDAVGFPDRP*
back to top

mRNA from alignment at L-elsbetiae_contig1280:13616..18288+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1280.2252.1 ID=mRNA_L-elsbetiae_contig1280.2252.1|Name=mRNA_L-elsbetiae_contig1280.2252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4673bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:13616..18288+ (Laminarionema elsbetiae ELsaHSoW15)
GTAAATAGTAATATTGGGGGTTTGAATGCGCGCTTGTTTTGCTTTTTATT
TTGTTTTGTAAATTAAACAAACTAGTCTCCCGTTTTCCACGTATCCGTCA
ACATGGACATCCTCGAGATGGCGGATCAATATCACAATTTTGAGAATTTT
TACAGCGACACCGGTGGTTCAAACACGCTCGTGAATGATGGTTCCCACAT
TCCTCTGGGCGAGGAGCCGTATCTGTTGATGCCCACTCTTACCTATGGAA
CCCATTGGACTTTCCAAGCTATTGTCAAATCCACGTCTCTCGACAAGCAA
TGCCTCTGCTCCATAGCCGACGGTACCGGACAGAGGTACTTCGACGTGCA
TATTGAGGGTGGCAACACAATTATTCTTTTTTACGAAGGAATCGAGACAA
GTCTTGTGTACAACACCGCGAGCACACCCATCGATGATTTTGTTCACTTT
GGAATCCAAGTCGGGTCGAAGGCCTTGAAAGTTGTTGCCAACGGAGCCAC
AAAAGTGTATAACGCATCATTGGCGCTCACTCCCCGGTCGTCGACGCATC
CACTGAGAATAATGCGCCCGGCTCACGTGGACGATAACTACTTCAATGGT
GCCATTCTCAGTATCATGGTCATCACAATATCACATATCTACTATAGTGA
TACATACACTCCGGTCACCACTCCCTACGTATCCAGTGATGGTAAAACGG
TGGCGGCCGGGATAGGACCATTTGATCTGATAGTCACTCCTAGACAAAGT
ACAGTCACGACAGGCCCGGCAGCGAAATGGCACTCGTTTTCGGGATACAG
CGACACACTTCTCCTCGGCACAATAACCGACACATGGGCAGGAGATTCTA
CCAAGAAAATCGGAACGCTCGAATTCGGCCAAACTAAGGTTGGCTTTTCG
CAAATCACCGGGCCATACAAAAACCTCGCCGCGCGAGGGGCACACTACTT
CCCTCAGATCAACGCATACGTTGCAGTCAATGCAGACATCGGTCAGGTAT
TGTCCATTGATATCGACAGCAGGCAAGGAACAGCTGTTTCCACAGGTGGG
GGGACGTACAGTTTCGGAAGAGGAGATTTTAAAAACAAGTACTTCTTCGG
TGCAAAGATATCATCGGGCGGGAAGAACCAGATTTTCAGAATGGACCCCG
ATGGTACGAACGAGATCGCTGTGGATTCAGAGACATTTCTCGGAACCGAC
GACGCCCTCTACGGCTTCTGCTTGAATGAGGACGACTCTCGGGTATTCTT
CCACGACAAGGGCACCAGCCAACTACGTAGCATCGACTATGACCTTGTTT
CAAACTTTGAAACGCATTTCAAGGGCAGTGAATTTGGTAGCTTGGATTAT
TGCCAAGGATACATTTACTACATGGGTCCAGATGGTGAAAATGCTGCCCA
AATCTATCGGTACAACCCTGTGACAGATGAAAAAGAGGCGATATACGGTG
TCTACGAAACTCTCCGCGCTCATCGATACGGACATTCACACCTCTTTATT
CATCGCGCCAGCAACTCCATGTTTTTATCGGGGACAAAGTTCCAGCATGT
TACGCCAACCTCTTTCGACTTTACCACACCATACATGTTCGAAAAGAGCA
GTAGGGTCGGTTCTTTCACGTTTCGATGGGAGCCTATCGAAAACGCGGTG
TCTTACAATGTTATCCAAAATGGGGTCGTCATCGGCAACACCACAAGCAC
AGAGTTTGAAGCAACGGGTCTAGGTGTCAGGAACGCCAAGTACTCATTTA
CTCTTGATTATTCCACCTCCTCCGATCCAACAACATTTGTGCAAGCTAGA
TACCACTACATCGACTATATTGCAAAACTGGTCGTTTCCAACTCGACGCC
TTTCATGCCGGATAACTGGAAGAAATACAGTAATTTCCTCGGTGCCGTCG
ATCCGTATCACCCATCCAATATATTCTTCGGTATCTCCAGTAACCCTGCA
AGCCTTCAAAAGTACAATATCGAGACCAACGCCTACACCAAAGTGGCGGA
CTGGTTTCCTAATATCAGAACAGGCAGTGTGTACGCCCGGTCTTGGATCA
CCAGGCGTGTCTTTGTTGTGATCAATTCTCGTCCTACTGTTGTGTACGAC
GCTGGTGTGGACTGCGAGCGCATGGCACTCTTTGCCACCGGTGAACAGTT
TATGGATGACCCGGACTCACTGGTATTTACCGCACCTGCAAACATTTCGT
GTATCGCCTCCACATTTCATGAGGACCGGCTGATATATGGGACGAATAAT
AGCGATATCAGCGTGTCTGTAAACGGCTCGGGTGATACATTTATCTGTTC
CACTGGCAATAGCGCCAGTGGGTTTGTTGCGATTGATCCATGGGACAGCT
CTACCCTCGTGTACAGCAATTCTGGTAAACTGGCGCATCGGAACCTGCAA
ACAGGGGTGGAAAGTATTTCCTTGACCACTGATCACAGGGGCACGCTTGA
GGCAAGGGTTTTAAACGGCATTGTCTATTTTGTGGGAAGGCACTCGAGCT
ACGGTGTTATAAGGGAACGCATCGATGGTACGGATCACTTCACATCGGGT
CCTCTTGTCCGCGCGGACGGCAAAAGTGTACCCAACTACACAACGGGATT
TTGTGAATCAGACTGTCACCGTTTACGAGAACAGGTGGTCAATCGTCACC
GCCATGACCGACGGTGGGATGCCGTTGGATTTCCCGACCGACCCTAGCTT
GAAAAAATTTAGCGTGGTGTCTGGACCGGTGTCTCTCAAAATGTTGTGGC
CGGGGGTCAGTGGTGCCACCAAATACCAAGTGGGATTCTCCGAGGGGGTG
CCCGGCGCTAACCCTGTCACGAAGAAAGCACGTATTCATCGTGCGGGTGT
GACAACAACCACGATTTACAATCTGCAACCGGAAACTACCTACTCTTTGT
ATCTGTACTACTCGACGGATGACAGTGACCCATCGGTCCTTCTGGGAGAA
GTCCTCGCTGTGACGTTGGTGGACAATCCCACCAACTACACCCTCGCAAG
CTTGTTAGACGAGTCTGGTGCAGTGGACCTGAGGGAATACGACCAGGATT
CCCTCGATCGCATAACCGAGAACATGAACGATATCCTCCCAACTGGAACT
AAGATTAGGCTGCCAGCACAAGGGCGTGGTGTGCGCGCCTTCAAAAACGC
CAAATTTATAAAGACGGGTGATACCGTCGATGTTGAAAACGACGTTTCTA
TTGCTTTTTCCTTCACTGAGACGGCGGGTACGGGTCAGAACGCGACGCTC
AATCTTTCCGACAACTCTGCTGTCGTAGTATCTTTTGATGAGGCTACCTC
TGGTATCACCATCGGGGATGTCTTTTACTCCCCCGGGGACACTTTTGTGA
TGGACAACCAAAAGGTTACGGTATTGGATGCATAATCATTAAATACCAAC
ATTGCCTGCTCAAAACCAGATAATTAATACATTAATAAAAAAGCACATGA
TATGAAACCAACTTCACCTACCCAACTCTCACAGAGTTTACAAGGCTCAA
TATAACCCACGCGAGCATGAAGACAGGCATCCCGGGACCGGAGGCCATGC
CACGCGGCCTCTCCATCTTGTTCACAGACATCATGGAGAGCACAACCAGG
GCTGGTGGCAAAAAGCCAAGCCCGTGGATGAGAGGACTGTGAACCTCCTC
ACTCAACTCGCCTTCTTGTATTGCCACATCTTTTTTCATCCCTATGAGCA
AACCAACTACCAGCCAGCAGCCCAGGAAGAGCATCTTCGATGCATGCAGA
GGTACGCCTGTCTTACCACCATCCATCAATATGCGAGACAGCATTGCTGC
AGCGTACACACCTACGGAGGCGACTGCAAGACTTTTGCGATGTTTTTGCG
CACGGGTCCCATTGTTCAAAAATCCAAGTATAATTGCCACCCAACCCAGC
GTAAAGAGCGGTATGCCACCGACCATCTGCATCTTCTTACCCGGTAAAGT
GTTCATGGCAACTATTGCAGCGCTGATCGATACACCACCGGACAGGCCGA
GGAACAGTGGCGTCTTCTCAAAAGTCAGAGAAGCCATTGTTGTGTATTTC
CGTGTTTAGCGCAAACATTTCTTTCTCAAATTTGCACCAAACATGATACA
TACAAAAATATGATCATGTAGAGCACGGGTGCCACCAGATGTACGGTGTA
CGCCTTTTCTGTCGCCATGCCGAACATCTTTGTAGGGAGATTCAGGCCAA
ACCTGCCCACTGCGGACAGACACAGACCGGTAAAGGCACCCACTACCATC
AACTTCTTCACGCGCGTCCGCCTGTCACTGTGCGTCTCGTCGCTTGACGT
TCCGACGAAGGTGTATGCGATACCATACACGAGGGAAACTGCAAGTGGCA
GAAATTCGTAGGGGATCGACAAGAAGTTCTCCAACTTGATATTTGTACCA
CTCGTCAGCGATTGCAACAAATGCAGCCTGTTTTTTCTTTGAGCCAAGCC
TAGGTAAAGCAACGTAGGGAAAGATGCCAGAACAGAAGTGCTTTTCAAGA
ACTCTCCCATTGTTTTTTTAAATGACAAATATTATTTTTGAGGATAAGTT
GTCTCTAATCTCCATCTCTCGCTGACGCTGAATGGCAAGCTTGTAAGCGA
TGTTCGCGCTCACGTCAAAGCAAGCATGCAGGCAGAGGCGGACGCTATTG
ATCGGGAGGAGGCATTGGCGGAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1280:13616..18288+

>mRNA_L-elsbetiae_contig1280.2252.1 ID=mRNA_L-elsbetiae_contig1280.2252.1|Name=mRNA_L-elsbetiae_contig1280.2252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5190bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:13616..18288+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCCTCGAGATGGCGGATCAATATCACAATTTTGAGAATTTTTA
CAGCGACACCGGTGGTTCAAACACGCTCGTGAATGATGGTTCCCACATTC
CTCTGGGCGAGGAGCCGTATCTGTTGATGCCCACTCTTACCTATGGAACC
CATTGGACTTTCCAAGCTATTGTCAAATCCACGTCTCTCGACAAGCAATG
CCTCTGCTCCATAGCCGACGGTACCGGACAGAGGTACTTCGACGTGCATA
TTGAGGGTGGCAACACAATTATTCTTTTTTACGAAGGAATCGAGACAAGT
CTTGTGTACAACACCGCGAGCACACCCATCGATGATTTTGTTCACTTTGG
AATCCAAGTCGGGTCGAAGGCCTTGAAAGTTGTTGCCAACGGAGCCACAA
AAGTGTATAACGCATCATTGGCGCTCACTCCCCGGTCGTCGACGCATCCA
CTGAGAATAATGCGCCCGGCTCACGTGGACGATAACTACTTCAATGGTGC
CATTCTCAGTATCATGGTCATCACAATATCACATATCTACTATAGTGATA
CATACACTCCGGTCACCACTCCCTACGTATCCAGTGATGGTAAAACGGTG
GCGGCCGGGATAGGACCATTTGATCTGATAGTCACTCCTAGACAAAGTAC
AGTCACGACAGGCCCGGCAGCGAAATGGCACTCGTTTTCGGGATACAGCG
ACACACTTCTCCTCGGCACAATAACCGACACATGGGCAGGAGATTCTACC
AAGAAAATCGGAACGCTCGAATTCGGCCAAACTAAGGTTGGCTTTTCGCA
AATCACCGGGCCATACAAAAACCTCGCCGCGCGAGGGGCACACTACTTCC
CTCAGATCAACGCATACGTTGCAGTCAATGCAGACATCGGTCAGGTATTG
TCCATTGATATCGACAGCAGGCAAGGAACAGCTGTTTCCACAGGTGGGGG
GACGTACAGTTTCGGAAGAGGAGATTTTAAAAACAAGTACTTCTTCGGTG
CAAAGATATCATCGGGCGGGAAGAACCAGATTTTCAGAATGGACCCCGAT
GGTACGAACGAGATCGCTGTGGATTCAGAGACATTTCTCGGAACCGACGA
CGCCCTCTACGGCTTCTGCTTGAATGAGGACGACTCTCGGGTATTCTTCC
ACGACAAGGGCACCAGCCAACTACGTAGCATCGACTATGACCTTGTTTCA
AACTTTGAAACGCATTTCAAGGGCAGTGAATTTGGTAGCTTGGATTATTG
CCAAGGATACATTTACTACATGGGTCCAGATGGTGAAAATGCTGCCCAAA
TCTATCGGTACAACCCTGTGACAGATGAAAAAGAGGCGATATACGGTGTC
TACGAAACTCTCCGCGCTCATCGATACGGACATTCACACCTCTTTATTCA
TCGCGCCAGCAACTCCATGTTTTTATCGGGGACAAAGTTCCAGCATGTTA
CGCCAACCTCTTTCGACTTTACCACACCATACATGTTCGAAAAGAGCAGT
AGGGTCGGTTCTTTCACGTTTCGATGGGAGCCTATCGAAAACGCGGTGTC
TTACAATGTTATCCAAAATGGGGTCGTCATCGGCAACACCACAAGCACAG
AGTTTGAAGCAACGGGTCTAGGTGTCAGGAACGCCAAGTACTCATTTACT
CTTGATTATTCCACCTCCTCCGATCCAACAACATTTGTGCAAGCTAGATA
CCACTACATCGACTATATTGCAAAACTGGTCGTTTCCAACTCGACGCCTT
TCATGCCGGATAACTGGAAGAAATACAGTAATTTCCTCGGTGCCGTCGAT
CCGTATCACCCATCCAATATATTCTTCGGTATCTCCAGTAACCCTGCAAG
CCTTCAAAAGTACAATATCGAGACCAACGCCTACACCAAAGTGGCGGACT
GGTTTCCTAATATCAGAACAGGCAGTGTGTACGCCCGGTCTTGGATCACC
AGGCGTGTCTTTGTTGTGATCAATTCTCGTCCTACTGTTGTGTACGACGC
TGGTGTGGACTGCGAGCGCATGGCACTCTTTGCCACCGGTGAACAGTTTA
TGGATGACCCGGACTCACTGGTATTTACCGCACCTGCAAACATTTCGTGT
ATCGCCTCCACATTTCATGAGGACCGGCTGATATATGGGACGAATAATAG
CGATATCAGCGTGTCTGTAAACGGCTCGGGTGATACATTTATCTGTTCCA
CTGGCAATAGCGCCAGTGGGTTTGTTGCGATTGATCCATGGGACAGCTCT
ACCCTCGTGTACAGCAATTCTGGTAAACTGGCGCATCGGAACCTGCAAAC
AGGGGTGGAAAGTATTTCCTTGACCACTGATCACAGGGGCACGCTTGAGG
CAAGGGTTTTAAACGGCATTGTCTATTTTGTGGGAAGGCACTCGAGCTAC
GGTGTTATAAGGGAACGCATCGATGGTACGGATCACTTCACATCGGGTCC
TCTTGTCCGCGCGGACGGCAAAAGTGTACCCAACTACACAACGGGATTTT
GTGAATCAGACTGTCACCGTTTACGAGAACAGGTGGTCAATCGTCACCGC
CATGACCGACGGTGGGATGCCGTTGGATTTCCCGACCGACCCTAGATGGA
CATCCTCGAGATGGCGGATCAATATCACAATTTTGAGAATTTTTACAGCG
ACACCGGTGGTTCAAACACGCTCGTGAATGATGGTTCCCACATTCCTCTG
GGCGAGGAGCCGTATCTGTTGATGCCCACTCTTACCTATGGAACCCATTG
GACTTTCCAAGCTATTGTCAAATCCACGTCTCTCGACAAGCAATGCCTCT
GCTCCATAGCCGACGGTACCGGACAGAGGTACTTCGACGTGCATATTGAG
GGTGGCAACACAATTATTCTTTTTTACGAAGGAATCGAGACAAGTCTTGT
GTACAACACCGCGAGCACACCCATCGATGATTTTGTTCACTTTGGAATCC
AAGTCGGGTCGAAGGCCTTGAAAGTTGTTGCCAACGGAGCCACAAAAGTG
TATAACGCATCATTGGCGCTCACTCCCCGGTCGTCGACGCATCCACTGAG
AATAATGCGCCCGGCTCACGTGGACGATAACTACTTCAATGGTGCCATTC
TCAGTATCATGGTCATCACAATATCACATATCTACTATAGTGATACATAC
ACTCCGGTCACCACTCCCTACGTATCCAGTGATGGTAAAACGGTGGCGGC
CGGGATAGGACCATTTGATCTGATAGTCACTCCTAGACAAAGTACAGTCA
CGACAGGCCCGGCAGCGAAATGGCACTCGTTTTCGGGATACAGCGACACA
CTTCTCCTCGGCACAATAACCGACACATGGGCAGGAGATTCTACCAAGAA
AATCGGAACGCTCGAATTCGGCCAAACTAAGGTTGGCTTTTCGCAAATCA
CCGGGCCATACAAAAACCTCGCCGCGCGAGGGGCACACTACTTCCCTCAG
ATCAACGCATACGTTGCAGTCAATGCAGACATCGGTCAGGTATTGTCCAT
TGATATCGACAGCAGGCAAGGAACAGCTGTTTCCACAGGTGGGGGGACGT
ACAGTTTCGGAAGAGGAGATTTTAAAAACAAGTACTTCTTCGGTGCAAAG
ATATCATCGGGCGGGAAGAACCAGATTTTCAGAATGGACCCCGATGGTAC
GAACGAGATCGCTGTGGATTCAGAGACATTTCTCGGAACCGACGACGCCC
TCTACGGCTTCTGCTTGAATGAGGACGACTCTCGGGTATTCTTCCACGAC
AAGGGCACCAGCCAACTACGTAGCATCGACTATGACCTTGTTTCAAACTT
TGAAACGCATTTCAAGGGCAGTGAATTTGGTAGCTTGGATTATTGCCAAG
GATACATTTACTACATGGGTCCAGATGGTGAAAATGCTGCCCAAATCTAT
CGGTACAACCCTGTGACAGATGAAAAAGAGGCGATATACGGTGTCTACGA
AACTCTCCGCGCTCATCGATACGGACATTCACACCTCTTTATTCATCGCG
CCAGCAACTCCATGTTTTTATCGGGGACAAAGTTCCAGCATGTTACGCCA
ACCTCTTTCGACTTTACCACACCATACATGTTCGAAAAGAGCAGTAGGGT
CGGTTCTTTCACGTTTCGATGGGAGCCTATCGAAAACGCGGTGTCTTACA
ATGTTATCCAAAATGGGGTCGTCATCGGCAACACCACAAGCACAGAGTTT
GAAGCAACGGGTCTAGGTGTCAGGAACGCCAAGTACTCATTTACTCTTGA
TTATTCCACCTCCTCCGATCCAACAACATTTGTGCAAGCTAGATACCACT
ACATCGACTATATTGCAAAACTGGTCGTTTCCAACTCGACGCCTTTCATG
CCGGATAACTGGAAGAAATACAGTAATTTCCTCGGTGCCGTCGATCCGTA
TCACCCATCCAATATATTCTTCGGTATCTCCAGTAACCCTGCAAGCCTTC
AAAAGTACAATATCGAGACCAACGCCTACACCAAAGTGGCGGACTGGTTT
CCTAATATCAGAACAGGCAGTGTGTACGCCCGGTCTTGGATCACCAGGCG
TGTCTTTGTTGTGATCAATTCTCGTCCTACTGTTGTGTACGACGCTGGTG
TGGACTGCGAGCGCATGGCACTCTTTGCCACCGGTGAACAGTTTATGGAT
GACCCGGACTCACTGGTATTTACCGCACCTGCAAACATTTCGTGTATCGC
CTCCACATTTCATGAGGACCGGCTGATATATGGGACGAATAATAGCGATA
TCAGCGTGTCTGTAAACGGCTCGGGTGATACATTTATCTGTTCCACTGGC
AATAGCGCCAGTGGGTTTGTTGCGATTGATCCATGGGACAGCTCTACCCT
CGTGTACAGCAATTCTGGTAAACTGGCGCATCGGAACCTGCAAACAGGGG
TGGAAAGTATTTCCTTGACCACTGATCACAGGGGCACGCTTGAGGCAAGG
GTTTTAAACGGCATTGTCTATTTTGTGGGAAGGCACTCGAGCTACGGTGT
TATAAGGGAACGCATCGATGGTACGGATCACTTCACATCGGGTCCTCTTG
TCCGCGCGGACGGCAAAAGTGTACCCAACTACACAACGGGATTTTGTGAA
TCAGACTGTCACCGTTTACGAGAACAGGTGGTCAATCGTCACCGCCATGA
CCGACGGTGGGATGCCGTTGGATTTCCCGACCGACCCTAG
back to top