mRNA_L-elsbetiae_contig1280.2251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1280.2251.1
Unique NamemRNA_L-elsbetiae_contig1280.2251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1280.2251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1280contigL-elsbetiae_contig1280:6511..6974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.1782465-CDS-L-elsbetiae_contig1280:6510..69391622815467.1782465-CDS-L-elsbetiae_contig1280:6510..6939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 6511..6939 +
1691682912.106759-CDS-L-elsbetiae_contig1280:6510..69391691682912.106759-CDS-L-elsbetiae_contig1280:6510..6939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 6511..6939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.1920714-UTR-L-elsbetiae_contig1280:6939..69741622815467.1920714-UTR-L-elsbetiae_contig1280:6939..6974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 6940..6974 +
1691682912.1261673-UTR-L-elsbetiae_contig1280:6939..69741691682912.1261673-UTR-L-elsbetiae_contig1280:6939..6974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 6940..6974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1280.2251.1prot_L-elsbetiae_contig1280.2251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1280 6511..6939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1280.2251.1

>prot_L-elsbetiae_contig1280.2251.1 ID=prot_L-elsbetiae_contig1280.2251.1|Name=mRNA_L-elsbetiae_contig1280.2251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
ALDSRFGGDLATPIFGLCSISLECTGGLRIPSKSLGVPCRDVWTFYLHTL
SGLLTALQQCWGHDGVVVNISQLSKFILRPRFQLHTFCSAPSDTTRWADT
KHTPLRYRIRHKITHPLGRFPRFGYSATSMILIPNDTFSDSS*
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mRNA from alignment at L-elsbetiae_contig1280:6511..6974+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1280.2251.1 ID=mRNA_L-elsbetiae_contig1280.2251.1|Name=mRNA_L-elsbetiae_contig1280.2251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=464bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:6511..6974+ (Laminarionema elsbetiae ELsaHSoW15)
GCACTAGACAGCCGGTTTGGCGGCGATTTGGCGACACCTATCTTTGGCCT
CTGTTCTATTAGTTTGGAGTGCACAGGCGGTCTTAGGATCCCGTCCAAAA
GCCTCGGAGTACCCTGCCGAGATGTATGGACATTCTACCTACATACACTA
TCCGGCCTCCTCACAGCTCTACAGCAGTGCTGGGGACACGACGGAGTTGT
GGTCAATATCTCACAACTCTCTAAATTCATTTTGCGTCCGCGATTCCAAC
TGCATACGTTCTGCAGCGCCCCCAGCGATACCACCCGTTGGGCTGACACC
AAACACACGCCGCTTCGATACCGTATACGACACAAGATAACACACCCCCT
GGGCCGATTTCCGAGGTTCGGTTACTCCGCAACGAGCATGATTCTAATAC
CAAACGACACGTTTTCGGACAGCTCTTGATGAGATATTTCCAACACCGCC
CTTTTCGGTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1280:6511..6974+

>mRNA_L-elsbetiae_contig1280.2251.1 ID=mRNA_L-elsbetiae_contig1280.2251.1|Name=mRNA_L-elsbetiae_contig1280.2251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:6511..6974+ (Laminarionema elsbetiae ELsaHSoW15)
GCACTAGACAGCCGGTTTGGCGGCGATTTGGCGACACCTATCTTTGGCCT
CTGTTCTATTAGTTTGGAGTGCACAGGCGGTCTTAGGATCCCGTCCAAAA
GCCTCGGAGTACCCTGCCGAGATGTATGGACATTCTACCTACATACACTA
TCCGGCCTCCTCACAGCTCTACAGCAGTGCTGGGGACACGACGGAGTTGT
GGTCAATATCTCACAACTCTCTAAATTCATTTTGCGTCCGCGATTCCAAC
TGCATACGTTCTGCAGCGCCCCCAGCGATACCACCCGTTGGGCTGACACC
AAACACACGCCGCTTCGATACCGTATACGACACAAGATAACACACCCCCT
GGGCCGATTTCCGAGGTTCGGTTACTCCGCAACGAGCATGATTCTAATAC
CAAACGACACGTTTTCGGACAGCTCTTGAGCACTAGACAGCCGGTTTGGC
GGCGATTTGGCGACACCTATCTTTGGCCTCTGTTCTATTAGTTTGGAGTG
CACAGGCGGTCTTAGGATCCCGTCCAAAAGCCTCGGAGTACCCTGCCGAG
ATGTATGGACATTCTACCTACATACACTATCCGGCCTCCTCACAGCTCTA
CAGCAGTGCTGGGGACACGACGGAGTTGTGGTCAATATCTCACAACTCTC
TAAATTCATTTTGCGTCCGCGATTCCAACTGCATACGTTCTGCAGCGCCC
CCAGCGATACCACCCGTTGGGCTGACACCAAACACACGCCGCTTCGATAC
CGTATACGACACAAGATAACACACCCCCTGGGCCGATTTCCGAGGTTCGG
TTACTCCGCAACGAGCATGATTCTAATACCAAACGACACGTTTTCGGACA
GCTCTTGA
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