mRNA_L-elsbetiae_contig12795.2238.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12795.2238.1
Unique NamemRNA_L-elsbetiae_contig12795.2238.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12795.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12795contigL-elsbetiae_contig12795:3557..4051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12795.2238.1prot_L-elsbetiae_contig12795.2238.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12795 3610..3999 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.1142938-UTR-L-elsbetiae_contig12795:3556..36091622815466.1142938-UTR-L-elsbetiae_contig12795:3556..3609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 3557..3609 +
1691682911.5035264-UTR-L-elsbetiae_contig12795:3556..36091691682911.5035264-UTR-L-elsbetiae_contig12795:3556..3609Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 3557..3609 +
1622815466.1362114-UTR-L-elsbetiae_contig12795:3999..40511622815466.1362114-UTR-L-elsbetiae_contig12795:3999..4051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 4000..4051 +
1691682911.5197256-UTR-L-elsbetiae_contig12795:3999..40511691682911.5197256-UTR-L-elsbetiae_contig12795:3999..4051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 4000..4051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.1242266-CDS-L-elsbetiae_contig12795:3609..39991622815466.1242266-CDS-L-elsbetiae_contig12795:3609..3999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12795 3610..3999 +
1691682911.5116584-CDS-L-elsbetiae_contig12795:3609..39991691682911.5116584-CDS-L-elsbetiae_contig12795:3609..3999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12795 3610..3999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12795.2238.1

>prot_L-elsbetiae_contig12795.2238.1 ID=prot_L-elsbetiae_contig12795.2238.1|Name=mRNA_L-elsbetiae_contig12795.2238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MGRTIDTATKSTQAEGSRHSNSRPDSCVFNVINRHLDPSTQHQYSHSHTR
TASHHTLNKYGTKSSTTHAIRHTIVELQVVPQPGRTNILNHKDRQSGNTR
ILRQARQAHPRAARGCMNPSLLSLYTRSV*
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mRNA from alignment at L-elsbetiae_contig12795:3557..4051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12795.2238.1 ID=mRNA_L-elsbetiae_contig12795.2238.1|Name=mRNA_L-elsbetiae_contig12795.2238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=495bp|location=Sequence derived from alignment at L-elsbetiae_contig12795:3557..4051+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCTGATACTACACCACAACCACACCCCGAAACGTGCAGACGACCGAA
TAGATGGGACGAACCATAGACACAGCTACCAAGAGCACCCAAGCTGAAGG
CTCCCGACACTCAAACTCGCGGCCAGACTCCTGCGTCTTTAATGTTATCA
ACCGTCACCTCGACCCATCCACCCAACACCAATACTCCCACAGCCATACG
CGCACCGCATCACACCACACGCTTAACAAGTACGGAACCAAATCTTCGAC
GACACATGCTATCAGGCACACTATCGTTGAACTACAAGTAGTCCCCCAAC
CCGGGCGAACAAACATATTAAATCACAAAGACAGGCAAAGCGGAAACACA
CGTATCTTGAGGCAAGCCAGACAAGCTCACCCAAGGGCAGCACGTGGATG
CATGAACCCCTCCCTTCTATCTCTCTACACTCGTTCTGTCTGATCACTCG
AATTTTCAGCTTGCCCTACAAATAACTCAGCCACGACTGGTAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12795:3557..4051+

>mRNA_L-elsbetiae_contig12795.2238.1 ID=mRNA_L-elsbetiae_contig12795.2238.1|Name=mRNA_L-elsbetiae_contig12795.2238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig12795:3557..4051+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACGAACCATAGACACAGCTACCAAGAGCACCCAAGCTGAAGGCTC
CCGACACTCAAACTCGCGGCCAGACTCCTGCGTCTTTAATGTTATCAACC
GTCACCTCGACCCATCCACCCAACACCAATACTCCCACAGCCATACGCGC
ACCGCATCACACCACACGCTTAACAAGTACGGAACCAAATCTTCGACGAC
ACATGCTATCAGGCACACTATCGTTGAACTACAAGTAGTCCCCCAACCCG
GGCGAACAAACATATTAAATCACAAAGACAGGCAAAGCGGAAACACACGT
ATCTTGAGGCAAGCCAGACAAGCTCACCCAAGGGCAGCACGTGGATGCAT
GAACCCCTCCCTTCTATCTCTCTACACTCGTTCTGTCTGAATGGGACGAA
CCATAGACACAGCTACCAAGAGCACCCAAGCTGAAGGCTCCCGACACTCA
AACTCGCGGCCAGACTCCTGCGTCTTTAATGTTATCAACCGTCACCTCGA
CCCATCCACCCAACACCAATACTCCCACAGCCATACGCGCACCGCATCAC
ACCACACGCTTAACAAGTACGGAACCAAATCTTCGACGACACATGCTATC
AGGCACACTATCGTTGAACTACAAGTAGTCCCCCAACCCGGGCGAACAAA
CATATTAAATCACAAAGACAGGCAAAGCGGAAACACACGTATCTTGAGGC
AAGCCAGACAAGCTCACCCAAGGGCAGCACGTGGATGCATGAACCCCTCC
CTTCTATCTCTCTACACTCGTTCTGTCTGA
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