mRNA_L-elsbetiae_contig1279.2236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1279.2236.1
Unique NamemRNA_L-elsbetiae_contig1279.2236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: D8LB56_ECTSI (Glyoxalase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB56_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 6.900e-40
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPAVLEAKISALL 249
            F   WCKNCK MVP IEK+A+GPLGEKL+VLTVDIDEA +LADEYDVSGVP+FVALRGG GDKADEYKG+DPA LEAKISALL
Sbjct:  345 FGAGWCKNCKKMVPAIEKLATGPLGEKLKVLTVDIDEADELADEYDVSGVPTFVALRGGRGDKADEYKGNDPAALEAKISALL 427          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A0M0J531_9EUKA (Glyoxalase domain-containing protein 4-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J531_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 8.890e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPAVLEAKISALL 249
            F   WCKNCK+++P +E +A+      +   TVDIDEAG+L + Y ++ VP FV L+GG+  K DEY GS    LEAK+ A L
Sbjct:  340 FGAGWCKNCKSILPFVETLATAL--PDVAFATVDIDEAGELVEAYQITAVPHFVVLKGGA--KVDEYVGSKGTDLEAKVRAAL 418          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A7S3UYM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM7_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-12
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPAVLEAKISALL 249
            F   WCKNC+ + P +  +A+  L E    LTVD+DEA +LA EY+VS VP+F  LRGG      EY GSD A L A + A L
Sbjct:   59 FGAGWCKNCQRLAPQVGAMAA-QLAEHAVFLTVDLDEADELAMEYEVSAVPAFKFLRGGQ--LVGEYLGSDAAELGAAVRARL 138          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A0F4ZKA2_9PEZI (Thioredoxin n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZKA2_9PEZI)

HSP 1 Score: 65.5 bits (158), Expect = 6.730e-12
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPAVLEAKISALL 249
            F  +WC  CK + P+ + +A+  + +KL    +DID+ G+LA EY VS +P+FV    G    A E KG+ PA L   +   L
Sbjct:   26 FWATWCAPCKAVAPLFQSLATANIHDKLAFAKIDIDDVGELAQEYGVSSIPTFVLFEDGK--PAGEIKGAAPAKLNELVKDAL 106          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A645B0C1_9ZZZZ (Thioredoxin-like protein n=3 Tax=root TaxID=1 RepID=A0A645B0C1_9ZZZZ)

HSP 1 Score: 62.8 bits (151), Expect = 5.610e-11
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGG 177
            F   WC  CK+M PV+E++ +  +GEK R++ +D+D+ G+LAD+Y +  VP+F+  + G
Sbjct:   18 FFAEWCGPCKSMKPVLEEVKAD-IGEKARIIKIDVDKFGELADKYRIQSVPTFILFKNG 75          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A6M8B733_9ACTO (Thioredoxin n=4 Tax=Actinomyces TaxID=1654 RepID=A0A6M8B733_9ACTO)

HSP 1 Score: 62.8 bits (151), Expect = 7.140e-11
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDP 216
            F   WC  C+ M PV++K+A   LGEK++V+ VDIDE   +A  + ++ +P+FV ++GG      ++ GS P
Sbjct:   27 FWAPWCGPCRQMAPVVDKVAD-ELGEKVKVVKVDIDENPSIAQSFGITSIPTFVVVKGGQ--TVHQFSGSRP 95          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: UPI001EE60C0C (thioredoxin-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE60C0C)

HSP 1 Score: 62.0 bits (149), Expect = 1.300e-10
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPAVLEAKISAL 246
            F   WC  C+ ++P  +++    LG+K+    VD+DEAGDLA+E D+S +P+F+  +GG  DK +  +G++   LE  I  L
Sbjct:   25 FGAPWCGPCRMILPFFQRLEE-ELGDKVIFAKVDVDEAGDLAEECDISCMPTFILYKGG--DKVETLQGANKDQLEETIKKL 103          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A7J6YMT3_9COLE (Thioredoxin n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J6YMT3_9COLE)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-10
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALR 171
            F  SWC  CK + P +E++AS  L E + VLTVD+D+  D+ADEYD+  +P+FV ++
Sbjct:   27 FFASWCGMCKTIAPSLEELAS-ELAELILVLTVDVDQCKDIADEYDIWEIPTFVLVK 82          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A6P8S0Y9_GEOSA (thioredoxin Y, chloroplastic-like isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8S0Y9_GEOSA)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-10
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPAVLEAKISAL 246
            F  SWC  C+ + P  E + S     ++  + VD+DE  D+ADEYD+  +P+FV L+  +G+K DE+ G  P  L AKI  L
Sbjct:  154 FTASWCGPCQMIAPYFE-VLSQRHNARVAFMKVDVDEVPDIADEYDIVAMPTFVFLK--NGEKVDEFCGDCPDTLAAKIILL 232          
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Match: A0A355FWP8_9BACT (Thioredoxin n=1 Tax=Candidatus Uhrbacteria bacterium TaxID=2053634 RepID=A0A355FWP8_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 1.930e-10
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGVPSFVALRGGSGDKADEYKGSDPA-VLEAKISALL 249
            F   WC  CK M PV+E++A G L  K++V  V++D+ GDLA +Y++  +P+F+  +GG     +++ G+ P   L  K+ A L
Sbjct:   26 FWAPWCGPCKMMAPVVEEVA-GELAGKVKVGKVNVDDYGDLAQQYNILSIPTFMIFKGGQA--VEQFSGAMPKETLMQKLKAHL 106          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1279.2236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB56_ECTSI6.900e-4083.13Glyoxalase domain containing protein n=2 Tax=Ectoc... [more]
A0A0M0J531_9EUKA8.890e-1546.99Glyoxalase domain-containing protein 4-like protei... [more]
A0A7S3UYM7_HETAK1.940e-1248.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0F4ZKA2_9PEZI6.730e-1237.35Thioredoxin n=1 Tax=Thielaviopsis punctulata TaxID... [more]
A0A645B0C1_9ZZZZ5.610e-1140.68Thioredoxin-like protein n=3 Tax=root TaxID=1 RepI... [more]
A0A6M8B733_9ACTO7.140e-1138.89Thioredoxin n=4 Tax=Actinomyces TaxID=1654 RepID=A... [more]
UPI001EE60C0C1.300e-1037.80thioredoxin-like n=1 Tax=Haliotis rubra TaxID=3610... [more]
A0A7J6YMT3_9COLE1.360e-1047.37Thioredoxin n=1 Tax=Lamprigera yunnana TaxID=37060... [more]
A0A6P8S0Y9_GEOSA1.680e-1040.24thioredoxin Y, chloroplastic-like isoform X1 n=2 T... [more]
A0A355FWP8_9BACT1.930e-1036.90Thioredoxin n=1 Tax=Candidatus Uhrbacteria bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1279contigL-elsbetiae_contig1279:27223..27477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue6.2e-33
Seed eggNOG ortholog2880.D8LB56
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,COG0526@1,KOG0907@2759,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Ec32 ortholog descriptionglyoxalase domain containing protein
Ec32 orthologEc-27_005140.1
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.0030625-CDS-L-elsbetiae_contig1279:27222..274771622815466.0030625-CDS-L-elsbetiae_contig1279:27222..27477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1279 27223..27477 -
1691682911.4462256-CDS-L-elsbetiae_contig1279:27222..274771691682911.4462256-CDS-L-elsbetiae_contig1279:27222..27477Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1279 27223..27477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1279.2236.1prot_L-elsbetiae_contig1279.2236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1279 27223..27477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1279.2236.1

>prot_L-elsbetiae_contig1279.2236.1 ID=prot_L-elsbetiae_contig1279.2236.1|Name=mRNA_L-elsbetiae_contig1279.2236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
FLGSWCKNCKNMVPVIEKIASGPLGEKLRVLTVDIDEAGDLADEYDVSGV
PSFVALRGGSGDKADEYKGSDPAVLEAKISALLE*
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mRNA from alignment at L-elsbetiae_contig1279:27223..27477-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1279.2236.1 ID=mRNA_L-elsbetiae_contig1279.2236.1|Name=mRNA_L-elsbetiae_contig1279.2236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig1279:27223..27477- (Laminarionema elsbetiae ELsaHSoW15)
TTCCTTGGCAGTTGGTGCAAGAATTGCAAGAATATGGTGCCCGTGATCGA GAAAATCGCGTCGGGCCCCCTGGGCGAGAAGCTCAGGGTGTTGACGGTGG ACATCGACGAGGCCGGGGACCTCGCCGACGAGTACGACGTGAGCGGCGTG CCGTCCTTCGTGGCGCTCAGGGGCGGCAGCGGCGACAAGGCCGACGAGTA CAAAGGCAGCGACCCTGCGGTGTTGGAGGCCAAGATCTCGGCGCTGCTGG AGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1279:27223..27477-

>mRNA_L-elsbetiae_contig1279.2236.1 ID=mRNA_L-elsbetiae_contig1279.2236.1|Name=mRNA_L-elsbetiae_contig1279.2236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig1279:27223..27477- (Laminarionema elsbetiae ELsaHSoW15)
TTCCTTGGCAGTTGGTGCAAGAATTGCAAGAATATGGTGCCCGTGATCGA
GAAAATCGCGTCGGGCCCCCTGGGCGAGAAGCTCAGGGTGTTGACGGTGG
ACATCGACGAGGCCGGGGACCTCGCCGACGAGTACGACGTGAGCGGCGTG
CCGTCCTTCGTGGCGCTCAGGGGCGGCAGCGGCGACAAGGCCGACGAGTA
CAAAGGCAGCGACCCTGCGGTGTTGGAGGCCAAGATCTCGGCGCTGCTGG
AGTAATTCCTTGGCAGTTGGTGCAAGAATTGCAAGAATATGGTGCCCGTG
ATCGAGAAAATCGCGTCGGGCCCCCTGGGCGAGAAGCTCAGGGTGTTGAC
GGTGGACATCGACGAGGCCGGGGACCTCGCCGACGAGTACGACGTGAGCG
GCGTGCCGTCCTTCGTGGCGCTCAGGGGCGGCAGCGGCGACAAGGCCGAC
GAGTACAAAGGCAGCGACCCTGCGGTGTTGGAGGCCAAGATCTCGGCGCT
GCTGGAGTAA
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