mRNA_L-elsbetiae_contig12785.2233.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: A0A6H5KC76_9PHAE (Beta-galactosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC76_9PHAE) HSP 1 Score: 197 bits (501), Expect = 4.090e-54 Identity = 114/229 (49.78%), Postives = 128/229 (55.90%), Query Frame = 1 Query: 1 DVETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRSGGXXXXXXXXXXXXXXXXXXXXXSTSGPFTTAVTLSITNRYDFTDDLWEVLTFGWRVEVDGIVVAEGHDLMPSSPRPTSHDGNYQ-------------GQGVGLEQGXXXXXXXXXDGRDTTARVTFET-PSLPPP-GGECRLTVTGRLRAAMPWAEAGHVVGHAQLEL 642 +VETWGYGGDF EPV+DGNFCVNGVVWPDRTPHPA+EEFK++MQPFH S+ P GV + S P T VTLSI NRYDFTD+LW++L FGW VEVDG+V+A G DL PSSP G G GR T A + FE+ PSL EC LTVTGRLR A WA AGH VGH QLEL Sbjct: 388 EVETWGYGGDFGEPVNDGNFCVNGVVWPDRTPHPALEEFKYLMQPFHASILPNGVTTTT-----------------------LRPSAPSPTTVTLSIANRYDFTDNLWDILVFGWHVEVDGVVMARGDDLSPSSPXXXXXXXXXXXXXXXXXXXXXXXASGFPAAAGEGGGAGA---GRVTAATLIFESLPSLTEGVEKECWLTVTGRLRVATAWAPAGHKVGHVQLEL 590
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: D7FS01_ECTSI (Beta-galactosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS01_ECTSI) HSP 1 Score: 184 bits (467), Expect = 1.560e-49 Identity = 119/228 (52.19%), Postives = 131/228 (57.46%), Query Frame = 1 Query: 4 VETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRSGGXXXXXXXXXXXXXXXXXXXXXSTSGPFTTAVTLSITNRYDFTDDLWEVLTFGWRVEVDGIVVAEGHDLMPSSPRPTSHDGNYQGQGVGLEQGXXXXXXXXXD-----------GRDTTARVTFET-PSLPPPGG---ECRLTVTGRLRAAMPWAEAGHVVGHAQLEL 642 VETWGYGGDF EPV+DGNFCVNGVVWPDR PHPAMEEFK++MQPFH S+ PGGV + S P T VTLSI NRYDFTD+LW++L FGW VEVDG+VVA XXXXXXXXX GR T A +TFE+ PSL GG EC LTVTGRLRAA WA AG+ VGH QLEL Sbjct: 798 VETWGYGGDFGEPVNDGNFCVNGVVWPDRKPHPAMEEFKYLMQPFHASILPGGVTTTTP-----------------------RPSAPSPTTVTLSIANRYDFTDNLWDILVFGWHVEVDGVVVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGRVTAATLTFESLPSLT--GGVEKECWLTVTGRLRAATAWAPAGYKVGHVQLEL 1000
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: A0A7C5R3V1_9CHLR (Beta-galactosidase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5R3V1_9CHLR) HSP 1 Score: 94.7 bits (234), Expect = 1.340e-18 Identity = 72/222 (32.43%), Postives = 92/222 (41.44%), Query Frame = 1 Query: 7 ETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHV---SLSPGGVEVSRSGGXXXXXXXXXXXXXXXXXXXXXSTSGPFTTAVTLSITNRYDFTDDLWEVLTFGWRVEVDGIVVAEGHDLMPSSPRPTSHDGNYQGQGVGLEQGXXXXXXXXXDGRDTTARVTFETPSLPPPGGECRLTVTGRLRAAMPWAEAGHVVGHAQLELELRLPGP 663 E + YGGDF E DG+FC+NG+VWPDRTPHP + E+K V++P V L+ G VE+ N YDF+D L W + DG + +G +P RP G+ RV FE P +P PG E RL ++ L WA+AGHVV AQLEL R P P Sbjct: 67 EWYAYGGDFGEARHDGDFCINGMVWPDRTPHPCLWEYKKVLEPVRVHPVDLAEGLVELE----------------------------------------NCYDFSD--LSHLALAWALTGDGCALQQGTLPLPEV-RP---------------------------GQRARVRVPFEAP-VPEPGVEYRLELSFALAQCTSWADAGHVVAWAQLELPFRAPRP 217
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: A0A835ZBT9_9STRA (Beta-galactosidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT9_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 8.570e-18 Identity = 47/116 (40.52%), Postives = 59/116 (50.86%), Query Frame = 1 Query: 4 VETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRSGGXXXXXXXXXXXXXXXXXXXXXSTSGPFTTAVTLSITNRYDFTDDLWEVLTFGWRV 351 VETW YGGDF EPV D +FC+NG WPDRTPHPA+ EFKH+ +PF S + + +S +G T + L + NRY T L LTFGW + Sbjct: 708 VETWAYGGDFNEPVTDYDFCINGATWPDRTPHPALYEFKHLAKPFTASTAAVPIPLSGAG----------------------------THRIPLKLVNRYQHTPSLAATLTFGWEL 795
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: UPI00053C25E2 (uncharacterized protein LOC104824194 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C25E2) HSP 1 Score: 81.6 bits (200), Expect = 5.410e-14 Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 4 VETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRS 180 ++ W YGGDF + +D NFC+NG+VWPDRTPHPAM E KH QP VSL+ G +++S + Sbjct: 632 IKRWAYGGDFGDEPNDLNFCLNGIVWPDRTPHPAMHEVKHCHQPIKVSLTEGTLKISNN 690
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: A0A7S4DIC2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIC2_HETAK) HSP 1 Score: 75.1 bits (183), Expect = 1.050e-13 Identity = 49/123 (39.84%), Postives = 57/123 (46.34%), Query Frame = 1 Query: 13 WGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRSGGXXXXXXXXXXXXXXXXXXXXXSTSGPFTTAVTLSITNRYDFTDDLWEVLTFGWRVEVDGIVVAEG 381 W YGGDF E V D NFC+NG+V PDRTP P E K++ QPF SL VEV S + + L NRY FTD L EVL+ W V+G VA G Sbjct: 6 WVYGGDFGEEVHDANFCINGLVLPDRTPKPGCLEAKYLQQPF--SLHVHSVEVRTSS----------------------HDTERAVVKLQLVAKNRYTFTDALGEVLSLEWEAAVNGAPVARG 104
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: X0W9Q8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0W9Q8_9ZZZZ) HSP 1 Score: 77.4 bits (189), Expect = 2.890e-13 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 4 VETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHV---SLSPGGVEV 171 VE W YGGDF + ++D NFC+NG++WPDRTPHPA+ E+K ++QP + +LS G E+ Sbjct: 125 VEYWAYGGDFGDKINDKNFCINGLIWPDRTPHPALYEYKKIIQPVEIKPKNLSAGKFEI 183
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: Q9M1I3_ARATH (Beta-galactosidase n=2 Tax=Camelineae TaxID=980083 RepID=Q9M1I3_ARATH) HSP 1 Score: 79.3 bits (194), Expect = 3.290e-13 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 4 VETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRS 180 ++ W YGGDF + +D NFC+NG++WPDRTPHPA+ E KH QP VSL+ G ++V+ + Sbjct: 600 IKRWAYGGDFGDQPNDLNFCLNGLIWPDRTPHPALHEVKHCYQPIKVSLTDGMIKVANT 658
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: A0A7G2EWN3_ARATH (Beta-galactosidase n=15 Tax=Brassicaceae TaxID=3700 RepID=A0A7G2EWN3_ARATH) HSP 1 Score: 79.3 bits (194), Expect = 3.420e-13 Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 4 VETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLSPGGVEVSRS 180 ++ W YGGDF + +D NFC+NG++WPDRTPHPA+ E KH QP VSL+ G ++V+ + Sbjct: 668 IKRWAYGGDFGDQPNDLNFCLNGLIWPDRTPHPALHEVKHCYQPIKVSLTDGMIKVANT 726
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Match: A0A348XFK1_9BACT (Beta-galactosidase n=1 Tax=Lentisphaeria bacterium TaxID=2053569 RepID=A0A348XFK1_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 5.980e-13 Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 Query: 13 WGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQP 135 W YGGDF EP+ D FC+NG++WPDRTPHPAM+EFKH++QP Sbjct: 612 WAYGGDFAEPIHDLQFCINGMIWPDRTPHPAMQEFKHLVQP 652 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12785.2233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12785.2233.1 >prot_L-elsbetiae_contig12785.2233.1 ID=prot_L-elsbetiae_contig12785.2233.1|Name=mRNA_L-elsbetiae_contig12785.2233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=247bp DVETWGYGGDFMEPVDDGNFCVNGVVWPDRTPHPAMEEFKHVMQPFHVSLback to top mRNA from alignment at L-elsbetiae_contig12785:1178..2992- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12785.2233.1 ID=mRNA_L-elsbetiae_contig12785.2233.1|Name=mRNA_L-elsbetiae_contig12785.2233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1815bp|location=Sequence derived from alignment at L-elsbetiae_contig12785:1178..2992- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12785:1178..2992- >mRNA_L-elsbetiae_contig12785.2233.1 ID=mRNA_L-elsbetiae_contig12785.2233.1|Name=mRNA_L-elsbetiae_contig12785.2233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig12785:1178..2992- (Laminarionema elsbetiae ELsaHSoW15)back to top |