mRNA_L-elsbetiae_contig12776.2227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12776.2227.1
Unique NamemRNA_L-elsbetiae_contig12776.2227.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.420e-43
Identity = 77/94 (81.91%), Postives = 87/94 (92.55%), Query Frame = 1 
Query:    1 LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRGR 282
            L+WTRA+TG+AIGGGMPLVYSILGDLV STGR EASG++GI+IG+G G+GQV+AGFTGSST LGWRLPFLL+ALPC ALA LVLVATRDP RGR
Sbjct:  141 LFWTRAITGVAIGGGMPLVYSILGDLVSSTGRTEASGLIGIAIGMGLGLGQVVAGFTGSSTSLGWRLPFLLMALPCFALALLVLVATRDPARGR 234
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: B7FPZ2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPZ2_PHATC)

HSP 1 Score: 93.2 bits (230), Expect = 3.340e-20
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRG 279
            LY  RAVTG ++GG +PL+YS+LGDL  +  R   S +VGI  G+G  +GQ IAGF G +   GWRLPFL+V++P L  AA VL+A  DP RG
Sbjct:   78 LYVCRAVTGFSLGGALPLIYSVLGDLFAADERHSVSAVVGIGTGLGISLGQAIAGFLGPA--FGWRLPFLVVSIPALLCAAGVLLAVDDPERG 168
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A7S0QU07_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QU07_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 3.790e-19
Identity = 45/90 (50.00%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 RAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRGR 282
            R +TGI+IGG +PL++SILGDL     R+E + + G+++GIGQ +GQ +AGF G +   GWR+PF++VALP +A A ++ + TR+PPRG+
Sbjct:    7 RMLTGISIGGAVPLIFSILGDLFPVGHRSEMAVVPGMAMGIGQLVGQALAGFVGPAY--GWRMPFVMVALPTMAFALVMWLTTREPPRGQ 94
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A1J4XHY8_9BACT (MFS domain-containing protein n=3 Tax=Candidatus Marinimicrobia TaxID=62680 RepID=A0A1J4XHY8_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 3.960e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRGR 282
            L+W RA+TGI IGG +PLVYS+LGD      R  A+  + +S+GIG  +GQ++AGF G S   GWRLPF+LVA+P   LA +     R+P RG+
Sbjct:  109 LFWLRALTGIGIGGALPLVYSLLGDYFSPKMRTAATAYMALSMGIGIALGQLLAGFIGPSH--GWRLPFILVAVPNFVLAVIFWFTMREPVRGK 200
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: D7G3X6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 9.500e-19
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQ 153
            L+WTRA+TG+AIGGGMPLVYSILGDLV STGR EASG++GI+IG+G G+GQ
Sbjct:  141 LFWTRAITGVAIGGGMPLVYSILGDLVSSTGRTEASGLIGIAIGMGLGLGQ 191
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A448ZEQ4_9STRA (MFS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.730e-18
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRG 279
            LY  RAVTG  +GG +P++YS+LGDL G+  R  AS +V   +G G  +GQ +AG+ G     GWRLPFL++++P L  AALV     DP RG
Sbjct:  167 LYLCRAVTGFGVGGALPVIYSVLGDLYGAGDRHVASALVSFGLGAGISLGQAVAGYLGPIY--GWRLPFLVISVPALVCAALVCTTVEDPERG 257
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A7S2RV00_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RV00_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.430e-18
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRG 279
            L+  R++TGI++GG +PL+YS+ GDL  +  R +   + G S+G+G G GQ+IAG TG S  +GWR PFL++A+P   L  L+L  T++P RG
Sbjct:  252 LFVLRSLTGISVGGSVPLIYSLFGDLHSNAYRGKVIALAGTSMGLGVGFGQIIAGTTGPS--MGWRFPFLVIAIPAYVLGILLLFTTKEPKRG 342
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A0D2LBS4_9CHLO (Major facilitator superfamily MFS-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LBS4_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 3.040e-18
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   13 RAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRG 279
            R +TG+A+GG  PLV+S+LGDL  +T RA  + ++ I+ G+G G GQ IAG  G +T   WR+PF+LVA P L LA +++  TR+PPRG
Sbjct:   93 RMLTGVAVGGVFPLVFSLLGDLFPATQRAAMASLLQIATGLGIGAGQFIAGIVGPATN--WRIPFVLVAAPALLLALIMVATTREPPRG 179
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BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A2R5GCN5_9STRA (Synaptic vesicle 2-related protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCN5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.510e-18
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   13 RAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRG 279
            RAVTG+++GG +PL YS+ GDL  +T R     + GI++G+G G GQ++AG  G +  LGWR+PF++VA+P   LA ++LV T++P RG
Sbjct:  185 RAVTGVSVGGAVPLSYSLFGDLWRTTKRGTVVALAGIAMGVGVGFGQIVAGIAGPT--LGWRVPFVMVAVPAYFLALVLLVTTQEPRRG 271
[Close]
BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Match: A0A2V0PAL6_9CHLO (MFS transporter n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PAL6_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 6.210e-18
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   13 RAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMGQVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRG 279
            R +TG+A+GG  PL++S+LGDL  +T RA  + +V I++G+G G+GQ+++G  G +T   WR+PF+LVA P L LA +++  T++PPRG
Sbjct:  191 RMLTGVAVGGVFPLIFSLLGDLFPATRRAAMASIVQIAMGLGIGLGQLLSGIIGPATN--WRVPFVLVAAPSLVLAVVMVATTKEPPRG 277
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12776.2227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP69_9PHAE1.420e-4381.91MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
B7FPZ2_PHATC3.340e-2053.76Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0QU07_9CHLO3.790e-1950.00Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1J4XHY8_9BACT3.960e-1950.00MFS domain-containing protein n=3 Tax=Candidatus M... [more]
D7G3X6_ECTSI9.500e-1978.43MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A448ZEQ4_9STRA1.730e-1848.39MFS domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S2RV00_9STRA2.430e-1846.24Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A0D2LBS4_9CHLO3.040e-1850.56Major facilitator superfamily MFS-1 n=1 Tax=Monora... [more]
A0A2R5GCN5_9STRA4.510e-1848.31Synaptic vesicle 2-related protein n=1 Tax=Hondaea... [more]
A0A2V0PAL6_9CHLO6.210e-1847.19MFS transporter n=1 Tax=Raphidocelis subcapitata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12776contigL-elsbetiae_contig12776:1381..3501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2.4e-17
Seed eggNOG ortholog2850.Phatr32014
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Sugar (and other) transporter
EggNOG OGs2XAEP@2836,KOG0255@1,KOG0255@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.8786135-CDS-L-elsbetiae_contig12776:1380..15121622815464.8786135-CDS-L-elsbetiae_contig12776:1380..1512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 1381..1512 -
1691682910.8015363-CDS-L-elsbetiae_contig12776:1380..15121691682910.8015363-CDS-L-elsbetiae_contig12776:1380..1512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 1381..1512 -
1622815464.8887663-CDS-L-elsbetiae_contig12776:3348..35011622815464.8887663-CDS-L-elsbetiae_contig12776:3348..3501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 3349..3501 -
1691682910.8164449-CDS-L-elsbetiae_contig12776:3348..35011691682910.8164449-CDS-L-elsbetiae_contig12776:3348..3501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 3349..3501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12776.2227.1prot_L-elsbetiae_contig12776.2227.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12776 1381..3501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12776.2227.1

>prot_L-elsbetiae_contig12776.2227.1 ID=prot_L-elsbetiae_contig12776.2227.1|Name=mRNA_L-elsbetiae_contig12776.2227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
LYWTRAVTGIAIGGGMPLVYSILGDLVGSTGRAEASGMVGISIGIGQGMG
QVIAGFTGSSTRLGWRLPFLLVALPCLALAALVLVATRDPPRGR*
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mRNA from alignment at L-elsbetiae_contig12776:1381..3501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12776.2227.1 ID=mRNA_L-elsbetiae_contig12776.2227.1|Name=mRNA_L-elsbetiae_contig12776.2227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2121bp|location=Sequence derived from alignment at L-elsbetiae_contig12776:1381..3501- (Laminarionema elsbetiae ELsaHSoW15)
CTCTACTGGACACGCGCCGTTACAGGGATCGCTATAGGAGGAGGGATGCC
TCTGGTGTACAGCATACTGGGGGATCTCGTCGGCAGCACGGGGAGGGCAG
AGGCGTCCGGAATGGTTGGTATTTCCATCGGCATCGGGCAGGGGATGGGG
CAGGTGACTTTTTTTTATTTTTTATTTTTTATCATTTTTTGTCTTTAGAA
AGGGGCACACAATGCTAAAAATAAATACCCGTTCGCTTTACTCGGCCGAA
CCAATATTGCACCAATATATGGAATACCGGTTGAGCCCCCCACGGAATCC
CGCCTCAGATGTGGGCTAGGTTTCGTTTTTGATTGTCTGATTTGTCTTTC
GAAATATTTACCCTTTCGCTTATTCTGCGTCGTATGTATGCACATACATG
CGGAATATTAATATTCAACACGGCAGTGTTTTGCTCGCACGCATGCTGTG
TGTGTCTGATCGGCCCAGAAAACGAAGTTTACCCGGGTCCGCCCTCATCT
GGGTACAATATAGACTTGGGGTAAATACGCAGGTATCCAAAGGGTGTGTT
CTGTAGGGTACGGGTACTCTCTGTGGGGTATTGGAATTGTTATAGAAGTC
ACAGAAGTTTTCTGTAGAATACCGACACACGCTACAGAACTCACACAACG
TCTCTGTAGGGTACTACTTACAGAGGGTAATTACCCCGGGTATGGCTTTG
TGGGTACCCTACAAAACACACCCCTTGCAGGTATCCTTTGGAAAGGGAAA
AAAAATACAACGCATCCGCCACGCCCGAGCGTGCAAAACGCCACGTGCTC
TTCAGGCGGCCGAGAGGGCGAGCGACGCCCTGCCTGCCTGCACAAAACCG
CGCGCATGGTGCACAGCAAGCAATTAGCTATAAACCACGTTGCAACCCCC
CCTCCGTGTCTGCTTTTTTTCTTCTCTCGTGTTTTTTTGCAAGGCCAGCA
TGCACCGTATTTGCTTTTATCGGCTGGGTTGCCTTCCACATACGCTGTTG
TTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGCTGCTGCTGTTGTTGTTGTTGATGGTGCTGGTGCTAG
TGCTGTGGCTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTT
GTTGTTGGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGACCTCTCTATCC
AGTACACCTCCATGAGTCCGTATCAATCCAACACTGACGCGGTCGACCCC
CGTGGCCCCAGGATAAATTACCATAAAAGGGTATATTTACTAAAAAATGA
AAATACATACAATAAAATGGGTCCGAAGGGTTCGCCAAGGCACGACGAAA
TAACGTAATTTATTTTTGTCAAAACAGGTCCCAGCGCTGGTAAACGTGTG
GGTATCCGTAAGAAAAAAACAGAAAAACAGGTGATCGCTGGTCTCACGAA
AAAAATGTATTTATGTATAGAGGGGATGAGCCTCCGATGGGTTCTACAGG
CGTCACTCTCTTCTTCGGATATATGGTGCGGAGAACGCACCACAGAAGTG
CGTGTCTTGGGTGGGCGAGCCAGCGTGTGTATTTGCATGGGCAAATACCC
CGAGTTCCTCCGAGAACGTTCTTCAGTTCATCCGAGGAAACGCAGGAACG
GAGACTGACTCTATCTGTGATACTCCGGTCAGGATACGATCCTAGCCGGT
TCATCTGATGACATAACTCTTACTGGCTAATGATCCAAGTTGGCATTTAC
ACAATTGCGCGTGTTTTTTTTCTTCTTTTCCCAAAACAGGTGATCGCCGG
CTTCACGGGGAGCTCCACGAGGCTCGGCTGGCGGCTGCCGTTCCTGCTCG
TGGCCTTGCCCTGCCTCGCGCTGGCGGCTCTCGTGCTCGTCGCAACAAGG
GACCCGCCGCGAGGAAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12776:1381..3501-

>mRNA_L-elsbetiae_contig12776.2227.1 ID=mRNA_L-elsbetiae_contig12776.2227.1|Name=mRNA_L-elsbetiae_contig12776.2227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig12776:1381..3501- (Laminarionema elsbetiae ELsaHSoW15)
CTCTACTGGACACGCGCCGTTACAGGGATCGCTATAGGAGGAGGGATGCC
TCTGGTGTACAGCATACTGGGGGATCTCGTCGGCAGCACGGGGAGGGCAG
AGGCGTCCGGAATGGTTGGTATTTCCATCGGCATCGGGCAGGGGATGGGG
CAGCTCTACTGGACACGCGCCGTTACAGGGATCGCTATAGGAGGAGGGAT
GCCTCTGGTGTACAGCATACTGGGGGATCTCGTCGGCAGCACGGGGAGGG
CAGAGGCGTCCGGAATGGTTGGTATTTCCATCGGCATCGGGCAGGGGATG
GGGCAGGTGATCGCCGGCTTCACGGGGAGCTCCACGAGGCTCGGCTGGCG
GCTGCCGTTCCTGCTCGTGGCCTTGCCCTGCCTCGCGCTGGCGGCTCTCG
TGCTCGTCGCAACAAGGGACCCGCCGCGAGGAAGGTAAGTGATCGCCGGC
TTCACGGGGAGCTCCACGAGGCTCGGCTGGCGGCTGCCGTTCCTGCTCGT
GGCCTTGCCCTGCCTCGCGCTGGCGGCTCTCGTGCTCGTCGCAACAAGGG
ACCCGCCGCGAGGAAGGTAA
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