mRNA_L-elsbetiae_contig12764.2221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12764.2221.1
Unique NamemRNA_L-elsbetiae_contig12764.2221.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: D7FLB8_ECTSI (Non-ribosomal peptide synthetase modules n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLB8_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.900e-59
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 1
Query:   28 LVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHAD 336
            +++GLCLCLLVA SKW LVGRVRPGE+FNTHSVRHLLWW IQRLQSFSGL+FVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHAD
Sbjct:    1 MLYGLCLCLLVAASKWLLVGRVRPGETFNTHSVRHLLWWTIQRLQSFSGLLFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHAD 103          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: W7U9S7_9STRA (Non-ribosomal peptide synthetase (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.370e-20
Identity = 46/113 (40.71%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   16 PVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQV 354
            P A LV+   L  LV  SK  ++G ++P E F   SV+ + +W + RL SF+ ++ + E++R  L+  YYRL+G+++GRDV ++TV I+DPD+V V DG+ I     L GH +
Sbjct:  237 PCAKLVYVTILLGLVILSKKLILGNIKPNEHFPLASVKFVQYWAVTRLMSFANILVLGELKRTYLLNTYYRLMGSRIGRDVLIDTVGITDPDMVIVHDGTVIGNGVLLLGHTI 349          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: A0A4D9CX67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX67_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.880e-20
Identity = 46/113 (40.71%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   16 PVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQV 354
            P A LV+   L  LV  SK  ++G ++P E F   SV+ + +W + RL SF+ ++ + E++R  L+  YYRL+G+++GRDV ++TV I+DPD+V V DG+ I     L GH +
Sbjct: 5955 PCAKLVYVTILLGLVILSKKLILGNIKPNEHFPLASVKFVQYWAVTRLMSFANILVLGELKRTYLLNTYYRLMGSRIGRDVLIDTVGITDPDMVIVHDGTVIGNGVLLLGHTI 6067          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: A0A7S4KMD4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KMD4_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 1.140e-19
Identity = 42/113 (37.17%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   16 PVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQV 354
            PVA++++G+ LCL +A +KW L+ R++P       S  HL WW + RL S++ L+F+D +R   ++  +Y  LGA +   V+L+TV I+  DLV++ +GS +   A + GH +
Sbjct:   66 PVAYVMYGVQLCLAIALTKWLLLFRIKPSVH-RLGSFYHLRWWFVDRLVSYANLLFLDNLRGTPMLNLFYNSLGASISLSVYLDTVDITAYDLVSIKEGSVVLSGAGIRGHSI 177          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: A0A8J9SI61_9CHLO (Probable fatty acid synthase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SI61_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 4.990e-18
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   13 LPVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGH 348
            +P AWLVFG+ L      +K A    +        +      WW++QR+   + ++F D++R    +VW++R LGA++G +V++++V +SD DL+ +GD   INE A L GH
Sbjct: 2635 IPAAWLVFGVLLMSAAVVTKHAFQPPLYAHRPIPMYGCEFFRWWLVQRMTGLTTVLFADQLRGTPFLVWWFRALGARIGHNVYIDSVDLSDFDLINIGDDVAINEGATLLGH 2746          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: I0YL01_COCSC (Carrier domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YL01_COCSC)

HSP 1 Score: 84.7 bits (208), Expect = 1.110e-16
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   13 LPVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGH 348
            +P AWL FG  L      +K A    +               WW++QR+   + ++F D++R    +VW++R LGA++GR+V+++++  SD DL+ +GD   INE A L GH
Sbjct: 2596 IPAAWLCFGALLMSATVVTKHAFQPPLYAHRPIPMFGCEFFRWWLVQRMTGLTTVLFADQLRGTPFLVWWFRALGARIGRNVYIDSLDFSDFDLINIGDDVAINEGATLLGH 2707          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: I0YXM1_COCSC (Carrier domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YXM1_COCSC)

HSP 1 Score: 80.9 bits (198), Expect = 2.490e-15
Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   16 PVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQVR 357
            P  WL  G+ LCL    +   L  ++         S+    WW++ RL   + ++F + +R    + W+YR LGA++G+  +++++ + D DL+T+GD   +NE + + GH  R
Sbjct: 2568 PAIWLCVGVALCLACVATSRLLQPKLSANRPLPMFSLEFARWWLVSRLVHVTTIVFAEHLRGTPFLTWWYRALGARIGKGGYIDSLDVCDFDLITIGDNVVVNEGSTIIGHFFR 2681          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: A0A2V9JLU9_9BACT (Peptide synthetase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9JLU9_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 4.300e-15
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   46 LCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQV 354
            L LLV G+KW ++GRVRPG  +      +L WW++Q L S   L   D +    L+   YRLLGA++G+DV + T  ++  D++++GDG+ I++ A L GH V
Sbjct:   71 LLLLVVGAKWLVIGRVRPGR-YPLWGGYYLRWWLVQALVSVLPL---DYLAGTPLLPLVYRLLGARIGKDVHIATNHLAAFDVISIGDGACIDDGASLLGHAV 169          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: UPI000255DF95 (non-ribosomal peptide synthetase n=1 Tax=Citricoccus sp. CH26A TaxID=1045009 RepID=UPI000255DF95)

HSP 1 Score: 78.2 bits (191), Expect = 2.120e-14
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   28 LVFGLCL----CLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQV 354
            LVFGL L     L+  GSKW ++GR +PG ++      ++ WW++QRLQ  SGL     +    L+  YYRL+GAK+GR+  L T   S  D V +GD STI     L G+++
Sbjct:  664 LVFGLILWPVLLLVGVGSKWVVIGRYKPG-AYPLWGSYYIRWWIVQRLQGLSGL---GMLAGTPLMTVYYRLMGAKVGRNCALETGLCSIWDTVRIGDDSTIGADTQLLGYRI 772          
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Match: A0A6A6MHZ3_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MHZ3_HEVBR)

HSP 1 Score: 77.4 bits (189), Expect = 4.060e-14
Identity = 37/123 (30.08%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    7 ATLPVAWL--VFGLCLCLLVAGSKWALVGRVRPGESFNTH----SVRHLLWWMIQRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVTVGDGSTINEHADLSGHQVR 357
            A+ P AW+  +   C+C+   G+ +     +RP  + N      S+  + WW + ++Q  S  +F + +R    + +++ +LGA++G  V L+T  I+DP LV++GDG+ I E A +  H+V+
Sbjct: 1280 ASAPFAWIFCMVSTCICIAFLGNSF-----LRPNYALNPEVSIWSIDFVKWWALYKVQEISSKVFAEHLRGTLFLNYWFEMLGARIGSSVLLDTTDITDPSLVSIGDGAVIAEGALIQAHEVK 1397          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12764.2221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB8_ECTSI1.900e-5992.23Non-ribosomal peptide synthetase modules n=2 Tax=E... [more]
W7U9S7_9STRA8.370e-2040.71Non-ribosomal peptide synthetase (Fragment) n=1 Ta... [more]
A0A4D9CX67_9STRA8.880e-2040.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4KMD4_9EUKA1.140e-1937.17Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A8J9SI61_9CHLO4.990e-1834.82Probable fatty acid synthase n=1 Tax=Coccomyxa sp.... [more]
I0YL01_COCSC1.110e-1633.93Carrier domain-containing protein n=1 Tax=Coccomyx... [more]
I0YXM1_COCSC2.490e-1528.95Carrier domain-containing protein n=2 Tax=Coccomyx... [more]
A0A2V9JLU9_9BACT4.300e-1540.78Peptide synthetase (Fragment) n=1 Tax=Acidobacteri... [more]
UPI000255DF952.120e-1440.71non-ribosomal peptide synthetase n=1 Tax=Citricocc... [more]
A0A6A6MHZ3_HEVBR4.060e-1430.08Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12764contigL-elsbetiae_contig12764:3207..4688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.3
Seed ortholog evalue4.1e-14
Seed eggNOG ortholog248742.XP_005643614.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Beta-ketoacyl synthase, C-terminal domain
EggNOG OGs34J4F@3041,388QH@33090,COG3321@1,KOG1202@2759
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-12_007540.1
Exons3
Model size360
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12764.2221.1prot_L-elsbetiae_contig12764.2221.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12764 3207..4688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.2717688-CDS-L-elsbetiae_contig12764:3206..33281622815464.2717688-CDS-L-elsbetiae_contig12764:3206..3328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12764 3207..3328 +
1691682910.4475558-CDS-L-elsbetiae_contig12764:3206..33281691682910.4475558-CDS-L-elsbetiae_contig12764:3206..3328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12764 3207..3328 +
1622815464.2845912-CDS-L-elsbetiae_contig12764:3934..40881622815464.2845912-CDS-L-elsbetiae_contig12764:3934..4088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12764 3935..4088 +
1691682910.457646-CDS-L-elsbetiae_contig12764:3934..40881691682910.457646-CDS-L-elsbetiae_contig12764:3934..4088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12764 3935..4088 +
1622815464.3027897-CDS-L-elsbetiae_contig12764:4604..46881622815464.3027897-CDS-L-elsbetiae_contig12764:4604..4688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12764 4605..4688 +
1691682910.4659038-CDS-L-elsbetiae_contig12764:4604..46881691682910.4659038-CDS-L-elsbetiae_contig12764:4604..4688Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12764 4605..4688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12764.2221.1

>prot_L-elsbetiae_contig12764.2221.1 ID=prot_L-elsbetiae_contig12764.2221.1|Name=mRNA_L-elsbetiae_contig12764.2221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
IFATLPVAWLVFGLCLCLLVAGSKWALVGRVRPGESFNTHSVRHLLWWMI
QRLQSFSGLIFVDEIRRGRLVVWYYRLLGAKLGRDVFLNTVRISDPDLVT
VGDGSTINEHADLSGHQVR*
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mRNA from alignment at L-elsbetiae_contig12764:3207..4688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12764.2221.1 ID=mRNA_L-elsbetiae_contig12764.2221.1|Name=mRNA_L-elsbetiae_contig12764.2221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig12764:3207..4688+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTTCGCGACCCTGCCTGTGGCCTGGCTGGTGTTTGGATTGTGCCTCTG CCTTCTGGTGGCGGGCAGCAAGTGGGCACTCGTCGGCAGGGTTCGGCCGG GGGAGTCGTTCAACACGCACAGGTAACCTAAGCTAAACCTTGGTCACTAA ACAAAGAACAATAGACAAAGCTGCCTGTGAGTCGTTCAACACGAACAGGC AAACCTGCAATGTACACACCTGATGAAAAAATACAGACATAAATTGGCAG TAAGCCCTGCAACAACCACAGGTGCCACTGAAATACTCCGGTAAATAAGA CGATGTTGATATGGGAGACATGCTTTTGTAGAAAACAAAGGACAGAAACG CAGATGCTGAAGTGTTCAGAAGCATATTTTGAGGCGAGGGTGTAGCTCCG AGTGCTTGTGATGCAGAAAACAGCGCCGGCACGTCCTGCTTTTGGTCTCG TCTTTTGATCATCAGGGAATGGAAAGGAATGGGACGGTGATGCTCGTTGT CGAAAGTATTGACATTTGAGATCCGAGATTGAGATCGACATTGAGATCGA TATCGAGATTGAGGTTGAGATCACGTGGCCGAGTCGATGGTCCATCCACC AGACAGCAAGGAACGAGCACTCCTCTCCTCACTTGACCCCCCTCCAACAA TCAGAAGACCAACATCATCCCCCGTTGTTTCCACGCCGCCGCGCGCCGCG TCGTGTTGACCAACCGATCACATCACAGCGTCCGGCACCTGCTGTGGTGG ATGATCCAGCGGCTGCAGAGCTTCTCGGGGTTGATCTTTGTCGACGAGAT CCGAAGGGGGCGCCTGGTGGTGTGGTACTACCGCCTTCTCGGGGCCAAGC TGGGCCGAGACGTATTCCTCAACACCGTCAGGGTGAGTAACAGGAGAGAG TCGGGGCGAGTCGAGTCTAATCGAGGGGGGAGGGAGGGCCGTCAACAAAA AAGCGGTGACGGGTGCGACGGCGATGGTAGACAGACAGCAGCCATGGAGG GCGCCTCTGCCTGCTGTCTGCTTTTGTGCTCTTGGCGGTAGAGCGGTCGA GCGATTGAACGCCGTTTGAGAGCGCGGTGCGAGGCTGGTGTTCTTGTGCG TTGCAACGTTTCATCGCCTTTTTTTCTTTCGTGTGTTCTCACTTGGTTGG CATATTGACCGGACCGCTGTCCTCCCGTCGCTGACACCTCCTCTCAAAAA GGTAATAGTTGTTCATAGTTACCTCTCGCTGTTCATTCACAATTAAAGTC AAAATGTGACCCTCCACTCTCATCCCGTTCGTAACAAACGCGTTCCCGGC ACAAGTTTACTCAATATCCTTGCCCAATCAAGTCAACAAAATCTCAAACC AACCTCAAACGATAGACGAGCTCCCTCCCCCCCCCCCCCCTGTTGCAGAT ATCCGATCCGGACTTGGTAACGGTAGGGGATGGGAGCACCATCAATGAGC ACGCAGATCTCAGCGGCCACCAGGTGAGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12764:3207..4688+

>mRNA_L-elsbetiae_contig12764.2221.1 ID=mRNA_L-elsbetiae_contig12764.2221.1|Name=mRNA_L-elsbetiae_contig12764.2221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig12764:3207..4688+ (Laminarionema elsbetiae ELsaHSoW15)
ATCTTCGCGACCCTGCCTGTGGCCTGGCTGGTGTTTGGATTGTGCCTCTG
CCTTCTGGTGGCGGGCAGCAAGTGGGCACTCGTCGGCAGGGTTCGGCCGG
GGGAGTCGTTCAACACGCACAGATCTTCGCGACCCTGCCTGTGGCCTGGC
TGGTGTTTGGATTGTGCCTCTGCCTTCTGGTGGCGGGCAGCAAGTGGGCA
CTCGTCGGCAGGGTTCGGCCGGGGGAGTCGTTCAACACGCACAGCGTCCG
GCACCTGCTGTGGTGGATGATCCAGCGGCTGCAGAGCTTCTCGGGGTTGA
TCTTTGTCGACGAGATCCGAAGGGGGCGCCTGGTGGTGTGGTACTACCGC
CTTCTCGGGGCCAAGCTGGGCCGAGACGTATTCCTCAACACCGTCAGGCG
TCCGGCACCTGCTGTGGTGGATGATCCAGCGGCTGCAGAGCTTCTCGGGG
TTGATCTTTGTCGACGAGATCCGAAGGGGGCGCCTGGTGGTGTGGTACTA
CCGCCTTCTCGGGGCCAAGCTGGGCCGAGACGTATTCCTCAACACCGTCA
GGATATCCGATCCGGACTTGGTAACGGTAGGGGATGGGAGCACCATCAAT
GAGCACGCAGATCTCAGCGGCCACCAGGTGAGATGAATATCCGATCCGGA
CTTGGTAACGGTAGGGGATGGGAGCACCATCAATGAGCACGCAGATCTCA
GCGGCCACCAGGTGAGATGA
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