mRNA_L-elsbetiae_contig12760.2219.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12760.2219.1
Unique NamemRNA_L-elsbetiae_contig12760.2219.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.410e-19
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 DCSPCFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQICRGCGTCDD--CTPC 189
            DCS C DL++ +E AL  D    K IVCD TC  +G D THCNYFG+ QICRGCG CD+  C PC
Sbjct:  247 DCSACLDLSSVEEEALITDTHGVKRIVCDATCNVDGADNTHCNYFGLGQICRGCGECDNGYCQPC 311
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BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-19
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 DCSPCFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQICRGCGTCDD--CTPC 189
            DCS C ++++E   AL ND    K+IVCDP C+ E  D  HCNYFG+ QICRGCG CDD  C PC
Sbjct:  172 DCSVCSEVSSEDAEALVNDDKGVKQIVCDPACVGEATDVLHCNYFGLGQICRGCGECDDGWCQPC 236
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BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.520e-17
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   13 CFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQICRGCGTCDDCTPC 189
            C D++  QE ALA      K IVCDPTCL  GGD +HCNYFG+ Q+CRGCG+C +C PC
Sbjct:  320 CADISPAQEEALAMYDGGGKVIVCDPTCL--GGDISHCNYFGLGQLCRGCGSCSECVPC 376
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BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.010e-16
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 DCSPCFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQICRGCGTC 171
            +CS C +LT EQ   LA+     K++VCDPTCL    DP HCNYFG+ QICRGCG C
Sbjct:   14 ECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDC 70
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BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.000e-15
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   13 CFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQICRGCGTCDDCTPC 189
            C D++  QE ALA      K IVCDPTCL E  D +HCNYFG+ Q+CRGCG+C  C PC
Sbjct:  355 CADISPAQEEALAMYDGGGKVIVCDPTCLGE--DISHCNYFGLGQLCRGCGSCSGCDPC 411
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BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 DCSPCFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQICRGCGTCDDCTPC 189
            DC+ C +L+  Q  ALA     AK +VCD  CL +G D   C+YFG+ QICRGCG CD C  C
Sbjct: 1179 DCAACSNLSEVQMLALAAHPGGAKRVVCDSDCL-DGVDVLDCDYFGLGQICRGCGDCDGCEAC 1240
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12760.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FTU6_ECTSI1.410e-1958.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L314_9PHAE1.820e-1956.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTW1_9PHAE2.520e-1759.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V0_9PHAE6.010e-1657.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4W7_ECTSI1.000e-1557.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI25_ECTSI1.560e-1250.79Mucin 17-like protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12760contigL-elsbetiae_contig12760:4901..5089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue5.7e-15
Seed eggNOG ortholog2880.D7FTU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.1398196-CDS-L-elsbetiae_contig12760:4900..50891622815464.1398196-CDS-L-elsbetiae_contig12760:4900..5089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12760 4901..5089 +
1691682910.3857865-CDS-L-elsbetiae_contig12760:4900..50891691682910.3857865-CDS-L-elsbetiae_contig12760:4900..5089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12760 4901..5089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12760.2219.1prot_L-elsbetiae_contig12760.2219.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12760 4901..5089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12760.2219.1

>prot_L-elsbetiae_contig12760.2219.1 ID=prot_L-elsbetiae_contig12760.2219.1|Name=mRNA_L-elsbetiae_contig12760.2219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=63bp
DCSPCFDLTAEQEHALANDYTPAKEIVCDPTCLAEGGDPTHCNYFGIKQI
CRGCGTCDDCTPC
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mRNA from alignment at L-elsbetiae_contig12760:4901..5089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12760.2219.1 ID=mRNA_L-elsbetiae_contig12760.2219.1|Name=mRNA_L-elsbetiae_contig12760.2219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=189bp|location=Sequence derived from alignment at L-elsbetiae_contig12760:4901..5089+ (Laminarionema elsbetiae ELsaHSoW15)
GATTGCTCCCCGTGCTTCGACCTGACCGCGGAGCAGGAGCACGCCCTGGC
AAACGACTACACCCCGGCGAAGGAGATCGTTTGCGACCCCACCTGCCTGG
CCGAGGGCGGCGACCCGACCCACTGCAACTACTTCGGGATCAAGCAGATC
TGCAGGGGGTGCGGCACGTGCGACGACTGCACGCCCTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12760:4901..5089+

>mRNA_L-elsbetiae_contig12760.2219.1 ID=mRNA_L-elsbetiae_contig12760.2219.1|Name=mRNA_L-elsbetiae_contig12760.2219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig12760:4901..5089+ (Laminarionema elsbetiae ELsaHSoW15)
GATTGCTCCCCGTGCTTCGACCTGACCGCGGAGCAGGAGCACGCCCTGGC
AAACGACTACACCCCGGCGAAGGAGATCGTTTGCGACCCCACCTGCCTGG
CCGAGGGCGGCGACCCGACCCACTGCAACTACTTCGGGATCAAGCAGATC
TGCAGGGGGTGCGGCACGTGCGACGACTGCACGCCCTGTGATTGCTCCCC
GTGCTTCGACCTGACCGCGGAGCAGGAGCACGCCCTGGCAAACGACTACA
CCCCGGCGAAGGAGATCGTTTGCGACCCCACCTGCCTGGCCGAGGGCGGC
GACCCGACCCACTGCAACTACTTCGGGATCAAGCAGATCTGCAGGGGGTG
CGGCACGTGCGACGACTGCACGCCCTGT
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