mRNA_L-elsbetiae_contig1276.2218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE) HSP 1 Score: 264 bits (675), Expect = 6.080e-82 Identity = 190/343 (55.39%), Postives = 199/343 (58.02%), Query Frame = 2 Query: 68 SSGCPVQHTQETSPP------AAGNGQQPSSAEGRNGGKGVWSGVAAWLPFRGGSGGSATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPVNSSEVPSS-------------SGCPVQHDSAAXXXXXXXSGSKGLGSIWGYLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNARNNEYVYGNEVAAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 SSGCPVQH + S P AAGN S+ + G+ S VAAWLPFR G XXXXXXXXXXXXXXXX XXX SGCPV+H SAA ++GLG +WGYL G YNARNNEYVYG EVAAGQE+PLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMVQEWER R G APKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR Sbjct: 5 SSGCPVQHAPKESSPTPAATAAAGNESTASTESEQASGRRWSSRVAAWLPFRQGGXXXXXXXXXXXXXXXXXXXXXXVQGSAAWRGTKEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCPVEHGSAATSTAAP---AEGLGRVWGYLTGSIGGAGGSGEVSSATAPAPAAPEL--------------YNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 330
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI) HSP 1 Score: 253 bits (647), Expect = 2.310e-77 Identity = 163/261 (62.45%), Postives = 167/261 (63.98%), Query Frame = 2 Query: 368 GCPVQHDSAAXXXXXXXSGSKGLGSIWGYLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNARNNEYVYGNEVAAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAA--------------------------AGAAAASGGEREASAGD-----------VPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 GCPVQH SAA G LG +WGYL G XXXXXXXXXXXXXX YNARNNEYVYG EVAAGQE+PLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMVQEWER AEAA G G + + VPAPKL RFTGRPQDTSPKAWVKSTL GYRPPFDR Sbjct: 110 GCPVQHGSAATSTAAPAGG---LGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPEL--------------YNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDR 353
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.690e-39 Identity = 78/153 (50.98%), Postives = 97/153 (63.40%), Query Frame = 2 Query: 581 NARNNEYVYGNEVAAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 + ++E V G Q +PLST+RQ S+IPK E P HQP+ A WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V+EWE +R GG+ PKL F GRP D SPKAW K+ +LGY+PPFDR Sbjct: 3 STNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMR-----------GGD----------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDR 133
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA) HSP 1 Score: 136 bits (342), Expect = 4.210e-34 Identity = 75/154 (48.70%), Postives = 92/154 (59.74%), Query Frame = 2 Query: 578 YNARNNEYVYGNEVAAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 YN N++V+ A Q+ LS R S+IPK +F P+HQP K EKWVYPSEQQYYNA+KRKGY S D+P+ L IHN VNEKGW V+EWE A SG P PKL +F G+P SPKA + + ++GY PFDR Sbjct: 62 YNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQP-KATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWE-----------AYSG---------FPNPKLKKFMGKPTQLSPKARLLN-MIGYSKPFDR 193
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.480e-32 Identity = 78/154 (50.65%), Postives = 91/154 (59.09%), Query Frame = 2 Query: 581 NARNNEYVYGNEVAAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKA-WVKSTLLGYRPPFDR 1039 N NNE Y Q +PLSTSR+ SSIPK++F P HQP+ +KWVYPSEQQY+NA+K KG+ D+ LAIHNAVNE+GW V EWE GG G P PKL RF GRPQD SPKA W+ + GY PFDR Sbjct: 80 NPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWE--------------GG-----LGSTP-PKLKRFMGRPQDLSPKAAWL--WMCGYNKPFDR 211
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A7S1UN93_9STRA (Holocytochrome c-type synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN93_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.910e-29 Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 2 Query: 629 QEMPLSTSRQRSSIPKAEFN-----PDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 Q +PLST R SSIP+ + P HQP + WVYPSEQQ+YNA+KRKG++A + MP + IHNAVNE+GW V +WE + P P+L+RF GRP+D SPKA++ + +LGYRPPFDR Sbjct: 78 QRIPLSTQRSISSIPRESSSNETPPPSHQPTS-SHNWVYPSEQQFYNAMKRKGWEADESTMPLVVRIHNAVNERGWSEVCKWEALHG--------------------CPNPRLVRFLGRPKDISPKAFLNTYILGYRPPFDR 198
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A7S4DXX3_9EUKA (Holocytochrome c-type synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXX3_9EUKA) HSP 1 Score: 120 bits (301), Expect = 5.640e-29 Identity = 65/138 (47.10%), Postives = 83/138 (60.14%), Query Frame = 2 Query: 626 GQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 GQ MPL T R S+IPK +F P HQ + +A W YPS QQ+YNA+KRKGY+ DM S +AIHN VNEK W+ V EWE++ + P P+L +F+GR D S KA + +T +GYRPPFDR Sbjct: 31 GQRMPLPTHRVESTIPKGDFKPSHQLEGKAN-WTYPSPQQFYNAMKRKGYQPKEEDMQSVVAIHNTVNEKTWKKVMEWEKMHLD------------------KCPNPRLEKFSGRANDQSLKARI-NTWMGYRPPFDR 148
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A7S0WA24_9CRYP (Holocytochrome c-type synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WA24_9CRYP) HSP 1 Score: 116 bits (291), Expect = 1.570e-27 Identity = 69/154 (44.81%), Postives = 89/154 (57.79%), Query Frame = 2 Query: 587 RNNEYVYGNEVAAG--QEMPLSTSRQRSSIPKAEFNPDHQPQK-EAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 RNN G G Q PLST+R SSIPK +F P HQ + + E+WVYPSEQ ++NA++RKG+ DM S +A+HNAVNE+ W V WER + P P+L+RF GRP+D SP+A + S LLGY+ PFDR Sbjct: 4 RNNMRKGGESQYPGLNQSRPLSTARVESSIPKDDFTPAHQAENSQKERWVYPSEQMFFNAMQRKGWNPKEDDMSSVVALHNAVNEQTWNEVLRWERDLHP------------------ECPQPRLVRFYGRPKDFSPRARIFS-LLGYKLPFDR 138
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: F2U7K0_SALR5 (Holocytochrome c-type synthase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7K0_SALR5) HSP 1 Score: 116 bits (291), Expect = 4.860e-27 Identity = 70/150 (46.67%), Postives = 87/150 (58.00%), Query Frame = 2 Query: 590 NNEYVYGNEVAA--GQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPF 1033 NN+ + + A GQ PL T+R SSIPKA+F P HQ Q E+ W YPSEQ +YNA+KRKG+K DM + LAIHNAVNE W VQEWE + AE + +V KL RF GRP+D +PKA+ + L R PF Sbjct: 47 NNQMLIQEKQAPSIGQSAPLPTNRVISSIPKADFTPAHQEQGESH-WHYPSEQMFYNAMKRKGWKPEERDMSTVLAIHNAVNETAWRQVQEWEGLHAETSE---------------EV---KLTRFMGRPKDLTPKAFFRGLLGPMRRPF 177
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Match: A0A7S0WSL6_9CHLO (Holocytochrome c-type synthase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSL6_9CHLO) HSP 1 Score: 116 bits (290), Expect = 6.610e-27 Identity = 65/141 (46.10%), Postives = 84/141 (59.57%), Query Frame = 2 Query: 617 VAAGQEMPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVQEWERVRAEAAAGAAAASGGEREASAGDVPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 1039 ++ Q +PLS R S+IPK EF P HQ K WVYPSEQ +YNA+KRKG++ + DMPS +AIHNAVNE+ W + WE + A A P+P L +F GRP+D SPKA + + LGY+ PFDR Sbjct: 55 ASSDQRIPLSIERVASTIPKDEFTPSHQ-SKTDPVWVYPSEQMFYNAMKRKGWQPNEVDMPSVVAIHNAVNERCWHEILTWEHLHASA------------------CPSPTLNKFEGRPKDYSPKARLLN-WLGYKLPFDR 175 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1276.2218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1276.2218.1 >prot_L-elsbetiae_contig1276.2218.1 ID=prot_L-elsbetiae_contig1276.2218.1|Name=mRNA_L-elsbetiae_contig1276.2218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=340bp MVERSNADGSMRESSSSGCPVQHTQETSPPAAGNGQQPSSAEGRNGGKGVback to top mRNA from alignment at L-elsbetiae_contig1276:25713..27457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1276.2218.1 ID=mRNA_L-elsbetiae_contig1276.2218.1|Name=mRNA_L-elsbetiae_contig1276.2218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1745bp|location=Sequence derived from alignment at L-elsbetiae_contig1276:25713..27457+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1276:25713..27457+ >mRNA_L-elsbetiae_contig1276.2218.1 ID=mRNA_L-elsbetiae_contig1276.2218.1|Name=mRNA_L-elsbetiae_contig1276.2218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig1276:25713..27457+ (Laminarionema elsbetiae ELsaHSoW15)back to top |