mRNA_L-elsbetiae_contig1276.2216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 473 bits (1216), Expect = 7.790e-151 Identity = 268/546 (49.08%), Postives = 315/546 (57.69%), Query Frame = 3 Query: 189 SLDLHKTPVNHTRTPHHTSLLP--LPLHPLLSFQQHVHAHTHQATTMTRLAA-LMVWATPAITLASSRESSLRGAQAAAAVPGVRRGLM----EMYEHVGCFADSRVLKH----PSMSANMTADLCYESCHTLGAHYMSTQNGDECWCSRLEDLAYAENGAGTCDTKCTGDSEETCGGPDSFDLYRLIGAAMPTDPEYVGCYSDTNEERVMTNMLVDNGMTTAFCRSHCEGTGSKYYATQYGNECFCGKSDVATDYEVHGKGTCHMPCAGDDPVACGGYWAFSLYKFGDDTPVMMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPXXXXXXXXXXXXXXXXXXSPVDGGEYGKTFTGDGTYYAPTDAGNCGYKGNVLGMYSGMIPMALNAAQYGDSLMCGSCVAGTASGNGAGRNPFPSPFMGFIQDQCPECSTGDLDAMTGEDGRWDIEWEFVACPGEEVTFEFEGSHEYYWKIQPRGTRTPVVTLSVNGQEGTRTQDNHFEVH----GTFKGAQTVVTTTVGGVTETNEVSL 1781 S + TP + H ++LLP L L P+ S T + MTRLAA L+V ATP +L E+SLRGA+ AAA G RRGL E YEH+GC+ D+ ++ P + MT +LCY+ CH LGA +M TQ G+EC CSR EDL Y +G CD C GDS ETCGG + DLY+L A P EY GC+SD E RVM +MLVD MTT CR HCE + + YYATQYGNECFCG S DYE HG GTCHM CAGD ACGGYWAFSL+KFG D MP P +P+ GG YG TF GDGTYY AGNCG+ + +YSGM P+ALNAAQYGDSLMCGSCV G +G G G NP + F GFI D+CPEC GDLD TG DGRWDIEW FVACPGEEV+F+ YYWKIQPRGT TPV +L++ G+ RT DNHFE+ + Q VVTTTVGGV E E+S+ Sbjct: 22 SREAQATPTTTPASTHSSALLPHSLALPPVASTGC---VPTAATSIMTRLAAALLVCATPVASL----ETSLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSFESGVCDEPCAGDSTETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADG---MPDPAVPDVSEPPSE--------------------------PAPEPVVSTPAPSMSEAESKTPISGGVYGTTFEGDGTYYTGISAGNCGFFDDFPSIYSGMTPVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPIGT-FKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMTPYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 464 bits (1194), Expect = 4.050e-148 Identity = 294/501 (58.68%), Postives = 343/501 (68.46%), Query Frame = 3 Query: 321 MTRLAA-LMVWATPAITLASSRESSLRGAQAAAAVPGVRRGLM----EMYEHVGCFADSRVLKH----PSMSANMTADLCYESCHTLGAHYMSTQNGDECWCSRLEDLAYAENGAGTCDTKCTGDSEETCGGPDSFDLYRLIGAAMPTDPEYVGCYSDTNEERVMTNMLVDNGMTTAFCRSHCEGTGSKYYATQYGNECFCGKSDVATDYEVHGKGTCHMPCAGDDPVACGGYWAFSLYKFGDDTPVMMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPXXXXXXXXXXXXXXXXXXSPVDGGEYGKTFTGDGTYYAPTDAGNCGYKGNVLGMYSGMIPMALNAAQYGDSLMCGSCVAGTASGNGAGRNPFPSPFMGFIQDQCPECSTGDLDAMTGEDGRWDIEWEFVACP-GEEVTFEFEGSHEYYWKIQPRGTRTPVVTLSVNGQEGTRTQDNHFEVH----GTFKGAQTVVTTTVGGVTETNEVSL 1781 MTRLAA L+V ATP +L E+SLRGA+ +A G RRGL E YEHVGC+ D+ ++ P + MT ++CY+ CH LG+ +M TQ G+EC CSR EDLAY+ G CD C GDS+ETCGG + DLY+L A P EYVGC+SD NE RVM +MLVD GMTT CR HCE + + YYATQYGNECFCG S DYE HG GTCHM C GD ACGGYWAFSLY+FG D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX V GGEYG TF G+GTYY T AGNCG+ + +Y GM P+ALN QYGDSLMCG+CV G +G G+G +P + F GFI D+CPECS GDLD TG+DGRWDI+W+FV CP GEEV+F+ E EYYWKIQPRGT TPV +L++ G+ RT DNHFE+ + Q VVTTTVGGV E E+S+ Sbjct: 1 MTRLAAALLVCATPVASL----ETSLRGAEVSAG--GARRGLSGSSYEAYEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEPDVPESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGGGGDVSGGEYGITFNGEGTYYTGTSAGNCGFFDDFPSIYDGMTPVALNEPQYGDSLMCGACVEGEGTGGGSGSDPVGT-FKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMSV 494
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 251 bits (642), Expect = 5.360e-72 Identity = 119/186 (63.98%), Postives = 141/186 (75.81%), Query Frame = 3 Query: 1233 GGEYGKTFTGDGTYYAPTDAGNCGYKGNVLGMYSGMIPMALNAAQYGDSLMCGSCVAGTASGNGAGRNPFPSPFMGFIQDQCPECSTGDLDAMTGEDGRWDIEWEFVACPGEEVTFEFEGSHEYYWKIQPRGTRTPVVTLSVNGQEGTRTQDNHFEVHG---TFKGAQTVVTTTVGGVTETNEVSL 1781 GG+YG+ ++G+GTYY T AG C + +V MY GMIP+ALNA QYGDSLMCG+CV GTASG+G+G NP PS F FI D+CPEC GDLD DGRWDIEW+FVACPGEE +F ++ YYWK+QPRGT TPVV+L+V+GQ RT DNHFEVH + GAQTVVTTTV GVTET EVS+ Sbjct: 101 GGQYGEEYSGEGTYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 228 bits (581), Expect = 5.190e-57 Identity = 114/214 (53.27%), Postives = 139/214 (64.95%), Query Frame = 3 Query: 423 PGVRRGLMEMYEHVGCFADS---RVLKHPSM-SANMTADLCYESCHTLGAHYMSTQNGDECWCSRLEDLAYAENG-AGTCDTKCTGDSEETCGGPDSFDLYRLIGAAMPTDPEYVGCYSDTNEERVMTNMLVDNGMTTAFCRSHCEGTGSKYYATQYGNECFCGKSDVATDYEVHGKGTCHMPCAGDDPVACGGYWAFSLYKF--GDDTPVMMP 1043 PG R G YEHVGCF DS RVL+ + S +MTA+LCYE+C T GA YM+TQ G ECWCSR L Y +G G CD C GD ETCGG SF+LYRL A P D EYVGCY+D +RV+++M+ + MT A CR HC + YY TQ+ +EC+CG SD DYE HG+G CHM C+GD VACGGY A+SL+K+ G + P P Sbjct: 1138 PGGRPGA---YEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAP 1348
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR) HSP 1 Score: 188 bits (477), Expect = 1.020e-49 Identity = 81/154 (52.60%), Postives = 106/154 (68.83%), Query Frame = 3 Query: 1236 GEYGKTFTGDGTYYAPTDAGNCGYKGNVLGMYSGMIPMALNAAQYGDSLMCGSCVAGTASGNGAGRNPFPSPFMGFIQDQCPECSTGDLDAMTGEDGRWDIEWEFVACPGEEVTFEFEGSHEYYWKIQPRGTRTPVVTLSVNGQEGTRTQDNHF 1697 G+Y +TF GDGTYY T GNC + + GMYSGM+P+A+N AQY +S CG+C+ T G G+G NP F ++ D+CPEC GD+D DGRW ++W F+ CPGE V F FEGS+ +Y K+QPRG +TPV SVNGQ+GT+TQDN + Sbjct: 18 GDYRRTFFGDGTYYGYTTRGNCAIRSPLPGMYSGMVPVAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPGEWVFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFY 171
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI) HSP 1 Score: 191 bits (484), Expect = 1.230e-47 Identity = 99/211 (46.92%), Postives = 129/211 (61.14%), Query Frame = 3 Query: 426 GVRRGLMEMYEHVGCFADS---RVLKHPSMSANMTADLCYESCHTLGAHYMSTQNGDECWCSRLEDLAYAENG------AGTCDTKCTGDSEETCGGPDSFDLYRLIGAAMPTDP-EYVGCYSDTNEERVMTNML-VDNGMTTAFCRSHCEGTGSKYYATQYGNECFCGKSDVATDYEVHGKGTCHMPCAGDDPVACGGYWAFSLYKFGDD 1025 GV+ YEH+GCFAD+ RVL H S MT+ +C E C A YM+ Q G ECWCSR +L Y+ + A CD C G ETCGG +FDLY+L G MP+D EYVGC++D E+R + N + + MT CR +CE GS +YATQYG+EC+CG +D +Y+ HG G C C GD +ACGGY+AFSL+++ DD Sbjct: 305 GVKAEFSLEYEHIGCFADNKTDRVLGHLMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSGTDKGDADLCDLSCYGCDAETCGGLYAFDLYKLDGP-MPSDSREYVGCFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSSFYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEYLDD 514
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI) HSP 1 Score: 178 bits (452), Expect = 3.460e-47 Identity = 89/173 (51.45%), Postives = 108/173 (62.43%), Query Frame = 3 Query: 1242 YGKTFTGDGTYYA--PTDAGNCGYKGNVLGMYSGMIPMALNAAQYGDSLMCGSCVAGTASGNGAGRNPFPSPFMGFIQDQCPECSTGDLDAMTGEDGRWDIEWEFVACPG-EEVTFEFEGSHEYYWKIQPRGTRTPVVTLSVNGQEGTRTQDNHFEVHG-TFKGAQTVVTTTV 1748 Y + F+GD TYY P GNC + + MY GMIP+ALN QY DS MCG+C+ G G G GR+P F ++ D+CPEC GDLD DGRWDI W FV C G + TF FEGS+E+YWKIQPRG R+PV L +NG E R++DN F + G F G Q V T TV Sbjct: 37 YDEQFSGDATYYGVTPDGDGNCAIRSPLPEMYDGMIPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFDGEQEVHTKTV 209
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR) HSP 1 Score: 179 bits (455), Expect = 9.460e-47 Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 3 Query: 1239 EYGKTFTGDGTYYAPTDAGNCGYKGNVLGMYSGMIPMALNAAQYGDSLMCGSCVAGTASGNGAGRNPFPSPFMGFIQDQCPECSTGDLDAMTGEDGRWDIEWEFVACPGEEVTFEFEGSHEYYWKIQPRGTRTPVVTLSVNGQEGTRTQDNHFEV 1703 +Y + F G+GTYY T GNC + + MY+GM+P+A+N AQY +S CG+C+ T G G+G NP F ++ D+CPEC GD+D G DGRW + W+F+ CPGE V F FEGS+ YY K+QPRG +TPV LSV GQ GT+TQDN + V Sbjct: 24 DYYRVFHGEGTYYGYTTRGNCAIRSPMPSMYNGMLPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPGEFVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIV 178
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 189 bits (480), Expect = 1.660e-45 Identity = 90/194 (46.39%), Postives = 126/194 (64.95%), Query Frame = 3 Query: 447 EMYEHVGCFADS---RVLKHPSMSANMTADLCYESCHTLGAHYMSTQNGDECWCSRLEDLAYAENGAGTCDTKCTGDSEETCGGPDSFDLYRLIGAAMPTDPEYVGCYSDTNEERVMTNML-VDNGMTTAFCRSHCEGTGSKYYATQYGNECFCGKSDVATDYEVHGKGTCHMPCAGDDPVACGGYWAFSLYKF 1016 E Y +VGCFADS RV ++ S+ MT +C E C A YM+TQ G ECWCS ++ Y + G CD C GD+ + CGG D+FDLY++ PT EYVGC++D E+R++ + + + MT A CR++CE + +YATQYG+EC+CG S+ DY+ HG+G+C C+GD VACGG+ AF+L+KF Sbjct: 431 EGYSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF 624
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 175 bits (443), Expect = 4.750e-43 Identity = 84/201 (41.79%), Postives = 122/201 (60.70%), Query Frame = 3 Query: 447 EMYEHVGCFADS---RVLKHPSMSANMTADLCYESCHTLGAHYMSTQNGDECWCSRLEDLAYAENGAGTCDTKCTGDSEETCGGPDSFDLYRLIGAAMPTDPEYVGCYSDTNEERVMTNML-VDNGMTTAFCRSHCEGTGSKYYATQYGNECFCGKSDVATDYEVHGKGTCHMPCAGDDPVACGGYWAFSLYKFGDDTPVM 1037 E Y +VGCFADS RV ++ S MT +C E C A +M+TQ G ECWCS ++ Y + G CD +C G++ + CGG D+FDLY++ PT EYVGC++D E+R++ + + + MT CR++CE + +YATQYG+EC+CG S+ DY+ HG+G+C C+GD VACG + +YK P + Sbjct: 9 EGYSYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCECGGEATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYKHESFQPFL 209 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1276.2216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1276.2216.1 >prot_L-elsbetiae_contig1276.2216.1 ID=prot_L-elsbetiae_contig1276.2216.1|Name=mRNA_L-elsbetiae_contig1276.2216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=488bp MTRLAALMVWATPAITLASSRESSLRGAQAAAAVPGVRRGLMEMYEHVGCback to top mRNA from alignment at L-elsbetiae_contig1276:765..9494- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1276.2216.1 ID=mRNA_L-elsbetiae_contig1276.2216.1|Name=mRNA_L-elsbetiae_contig1276.2216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8730bp|location=Sequence derived from alignment at L-elsbetiae_contig1276:765..9494- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1276:765..9494- >mRNA_L-elsbetiae_contig1276.2216.1 ID=mRNA_L-elsbetiae_contig1276.2216.1|Name=mRNA_L-elsbetiae_contig1276.2216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2928bp|location=Sequence derived from alignment at L-elsbetiae_contig1276:765..9494- (Laminarionema elsbetiae ELsaHSoW15)back to top |