mRNA_L-elsbetiae_contig12758.2214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12758.2214.1
Unique NamemRNA_L-elsbetiae_contig12758.2214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12758.2214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12758contigL-elsbetiae_contig12758:3923..4949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size608
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12758.2214.1prot_L-elsbetiae_contig12758.2214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12758 3923..4818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815463.4652445-CDS-L-elsbetiae_contig12758:3922..43131622815463.4652445-CDS-L-elsbetiae_contig12758:3922..4313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12758 3923..4313 +
1691682910.0067022-CDS-L-elsbetiae_contig12758:3922..43131691682910.0067022-CDS-L-elsbetiae_contig12758:3922..4313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12758 3923..4313 +
1622815463.4811628-CDS-L-elsbetiae_contig12758:4732..48181622815463.4811628-CDS-L-elsbetiae_contig12758:4732..4818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12758 4733..4818 +
1691682910.0233703-CDS-L-elsbetiae_contig12758:4732..48181691682910.0233703-CDS-L-elsbetiae_contig12758:4732..4818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12758 4733..4818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815463.4927-UTR-L-elsbetiae_contig12758:4818..49491622815463.4927-UTR-L-elsbetiae_contig12758:4818..4949Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12758 4819..4949 +
1691682910.0333629-UTR-L-elsbetiae_contig12758:4818..49491691682910.0333629-UTR-L-elsbetiae_contig12758:4818..4949Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12758 4819..4949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12758.2214.1

>prot_L-elsbetiae_contig12758.2214.1 ID=prot_L-elsbetiae_contig12758.2214.1|Name=mRNA_L-elsbetiae_contig12758.2214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
LAAVTTRRAAPVGATAGRTPRIASAGKPADRPVPAARLAATAPPTPTVTA
LLPRAAIPNPRRTAPTRAAAPPSAKRRGSRRPASTHLIGAARPASAPTTV
APVARTPATPAGGSPTPRSSAKPRAAASPPGRPADSGGSRRARGFWASSA
AHDHAIRP*
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mRNA from alignment at L-elsbetiae_contig12758:3923..4949+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12758.2214.1 ID=mRNA_L-elsbetiae_contig12758.2214.1|Name=mRNA_L-elsbetiae_contig12758.2214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1027bp|location=Sequence derived from alignment at L-elsbetiae_contig12758:3923..4949+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCTGCCGTGACTACTCGTCGCGCGGCTCCAGTGGGAGCGACCGCTGG
AAGGACTCCTCGGATCGCCAGCGCAGGGAAGCCCGCCGATCGCCCCGTTC
CGGCCGCTCGCCTCGCCGCCACAGCTCCTCCAACGCCAACGGTCACCGCT
CTTCTTCCCCGCGCAGCGATCCCGAACCCCCGGCGTACGGCTCCGACACG
CGCAGCCGCGCCGCCAAGCGCAAAGAGGAGAGGCAGCAGGCGCCCCGCGA
GCACACACCTTATCGGAGCAGCAAGGCCAGCAAGCGCTCCGACAACCGTA
GCCCCCGTTGCCAGGACTCCAGCGACTCCCGCGGGAGGGAGTCCGACTCC
TCGTTCGTCAGCAAAGCCTCGGGCAGCCGCATCCCCACCAGGCAAGTTCT
TCCCGCGCATGCAGTACCCACATCTTGCCTTCCTGCAGCGTTGCTTCAGC
AAAGGTCCATCCGTGTACACATTGCAGCAACAATTTGCCCAACAAGATGC
ACGCTCGCGCATCGTGGTCGTCAAAGAGAAATACGCCAAGACAAGCTTCA
AAACGATCCCGCTCATCCACCCGTCCCTTCCGTTCCACAAAAGCATCAAC
GGAGCCAGTGCCATCACACAACTGCTAGATACCTCTAAGACAGCCATGGA
AGAAATGTTATTGCAAGCCGATCCCCTTCTGGAGTTCACCGCCGGCAGCT
GTGTTCCAGGTTGGCAGCGCTACACCAAGCGCGCCGTCAAAGCAGCTATC
ACCGCGAACACTCCCCAATCGGCCAACCTGCATGCAATCTTCTCCGGATT
TTTCGAGCAGGTAGACCAGCGGACAGCGGAGGGAGCCGGAGGGCACGAGG
CTTTTGGGCATCTTCTGCAGCTCATGACCATGCAATTCGGCCCTGAAGAC
CGAGGCGACGCCTTCATGCGTCTGAACGCATATGTTGTCCCGTCGGGAAC
TACTTTCACCAATGTTTTGCAAGAGTACCGTCAAGAGGTTGCGAACGTGT
CGCATTCAGCTAATGCAATTAAGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12758:3923..4949+

>mRNA_L-elsbetiae_contig12758.2214.1 ID=mRNA_L-elsbetiae_contig12758.2214.1|Name=mRNA_L-elsbetiae_contig12758.2214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig12758:3923..4949+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCTGCCGTGACTACTCGTCGCGCGGCTCCAGTGGGAGCGACCGCTGG
AAGGACTCCTCGGATCGCCAGCGCAGGGAAGCCCGCCGATCGCCCCGTTC
CGGCCGCTCGCCTCGCCGCCACAGCTCCTCCAACGCCAACGGTCACCGCT
CTTCTTCCCCGCGCAGCGATCCCGAACCCCCGGCGTACGGCTCCGACACG
CGCAGCCGCGCCGCCAAGCGCAAAGAGGAGAGGCAGCAGGCGCCCCGCGA
GCACACACCTTATCGGAGCAGCAAGGCCAGCAAGCGCTCCGACAACCGTA
GCCCCCGTTGCCAGGACTCCAGCGACTCCCGCGGGAGGGAGTCCGACTCC
TCGTTCGTCAGCAAAGCCTCGGGCAGCCGCATCCCCACCAGCTCGCTGCC
GTGACTACTCGTCGCGCGGCTCCAGTGGGAGCGACCGCTGGAAGGACTCC
TCGGATCGCCAGCGCAGGGAAGCCCGCCGATCGCCCCGTTCCGGCCGCTC
GCCTCGCCGCCACAGCTCCTCCAACGCCAACGGTCACCGCTCTTCTTCCC
CGCGCAGCGATCCCGAACCCCCGGCGTACGGCTCCGACACGCGCAGCCGC
GCCGCCAAGCGCAAAGAGGAGAGGCAGCAGGCGCCCCGCGAGCACACACC
TTATCGGAGCAGCAAGGCCAGCAAGCGCTCCGACAACCGTAGCCCCCGTT
GCCAGGACTCCAGCGACTCCCGCGGGAGGGAGTCCGACTCCTCGTTCGTC
AGCAAAGCCTCGGGCAGCCGCATCCCCACCAGGTAGACCAGCGGACAGCG
GAGGGAGCCGGAGGGCACGAGGCTTTTGGGCATCTTCTGCAGCTCATGAC
CATGCAATTCGGCCCTGAGTAGACCAGCGGACAGCGGAGGGAGCCGGAGG
GCACGAGGCTTTTGGGCATCTTCTGCAGCTCATGACCATGCAATTCGGCC
CTGA
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