mRNA_L-elsbetiae_contig12751.2211.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12751.2211.1
Unique NamemRNA_L-elsbetiae_contig12751.2211.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: D8LH84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH84_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.010e-34
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQIKQ 240
            DI TG Q SGVDTAEIFFKE+P+ VVTKLC EGTV+QCAGGLMVEH LV+P+I +IDGS+DS MGLSKALV +LLE+ KQ
Sbjct:  131 DISTGQQFSGVDTAEIFFKEVPESVVTKLCGEGTVLQCAGGLMVEHPLVEPFIARIDGSMDSVMGLSKALVLELLEKHKQ 210          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: A0A0G4EZT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EZT5_VITBC)

HSP 1 Score: 107 bits (268), Expect = 5.880e-27
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQIKQ 240
            D+ T  QVSGVDTA I  K IPDD++ KL DEG ++ CAGGLM+EH LV+PYI +IDG+ DS +GLSKALVD LL  ++Q
Sbjct:  175 DLHTRTQVSGVDTATIHIKPIPDDIIQKLIDEGDILHCAGGLMIEHPLVEPYIERIDGAFDSVLGLSKALVDSLLIDLRQ 254          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: A0A836CPK2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPK2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.710e-24
Identity = 45/75 (60.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:   13 GAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQIK 237
            G +VSGVDTA I+F+ IPD VV +LC E  ++ CAGGLM+EH LV+PYI +I+G+IDS MGLSK LV +LL++++
Sbjct:  129 GRRVSGVDTACIYFRPIPDSVVDELCKEEEILWCAGGLMIEHPLVEPYIERIEGTIDSVMGLSKPLVQRLLDELE 203          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: A0A4Y7K367_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K367_PAPSO)

HSP 1 Score: 88.2 bits (217), Expect = 1.620e-20
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            ++ TG +    D  EI+F+EIPD+V+ KL DEG V+  AGGL++EH L+ P+I K++G+ DS MGL KAL +KL+ ++
Sbjct:   65 NLTTGTRRGEWDRVEIYFREIPDEVIEKLVDEGVVLYVAGGLIIEHPLILPFIEKVEGTTDSVMGLPKALTEKLIHEV 142          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: A0A7S2C1Q1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C1Q1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.890e-20
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            D VTG++V GV TA+I    +P DV+  L +EGTV+ CAGGLMVEH  + PY+T ++G IDS MGLS  L+  LL Q+
Sbjct:  135 DPVTGSRVVGVHTADIHLAPLPSDVIDGLIEEGTVLHCAGGLMVEHPAIAPYLTHVEGGIDSVMGLSTRLLASLLAQL 212          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: UPI000E6FB471 (maf-like protein DDB_G0281937 isoform X4 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FB471)

HSP 1 Score: 88.2 bits (217), Expect = 3.660e-20
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            ++ TG +    D  EI+F+EIPD+V+ KL DEG V+  AGGL++EH L+ P+I K++G+ DS MGL KAL +KL+ ++
Sbjct:   98 NLTTGTRRGEWDRVEIYFREIPDEVIEKLVDEGVVLYVAGGLIIEHPLILPFIEKVEGTTDSVMGLPKALTEKLIHEV 175          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: UPI00090146E5 (maf-like protein DDB_G0281937 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00090146E5)

HSP 1 Score: 88.6 bits (218), Expect = 4.750e-20
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            ++ TG +   +D  EI+F EIP+DV+ KL +EGTV+  AGGL++EH L+QPYI ++ G+ DS MGL KAL  KL+ ++
Sbjct:  125 NLKTGKKRGELDKVEIYFHEIPEDVIDKLIEEGTVLYVAGGLLIEHPLIQPYIKRVAGATDSVMGLPKALTQKLITEV 202          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: Q01DW4_OSTTA (Maf-like protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01DW4_OSTTA)

HSP 1 Score: 87.8 bits (216), Expect = 1.120e-19
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            D+ TG     VD   + F  IPDDVV  + +EG  M CAGGLMVEH LVQPY+ +IDGS+D  MGL    V++LL+++
Sbjct:  133 DLSTGKSALAVDVNTVVFDAIPDDVVDAIVEEGECMHCAGGLMVEHELVQPYLRRIDGSLDGVMGLDAKTVERLLDEL 210          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: A0A4Y7IAX5_PAPSO (Uncharacterized protein n=5 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IAX5_PAPSO)

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-19
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            ++ TG +    D  EI+F+EIPD+V+ KL DEG V+  AGGL++EH L+ P+I K++G+ DS MGL KAL +KL+ ++
Sbjct:  154 NLTTGTRRGEWDRVEIYFREIPDEVIEKLVDEGVVLYVAGGLIIEHPLILPFIEKVEGTTDSVMGLPKALTEKLIHEV 231          
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Match: A0A7I8JXT5_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JXT5_SPIIN)

HSP 1 Score: 86.7 bits (213), Expect = 2.710e-19
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQPYITKIDGSIDSAMGLSKALVDKLLEQI 234
            ++ TG + +G D AE++F  IP++V+  L +EGTV+  AGGLMVEH L  P++  + GSIDS MGL KAL +KLL ++
Sbjct:  126 NLKTGIRSAGWDKAEVYFHAIPEEVIESLIEEGTVLYVAGGLMVEHPLTSPFVDSVVGSIDSVMGLPKALTEKLLREV 203          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12751.2211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH84_ECTSI3.010e-3476.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4EZT5_VITBC5.880e-2762.50Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A836CPK2_9STRA4.710e-2460.00Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A4Y7K367_PAPSO1.620e-2048.72Uncharacterized protein n=1 Tax=Papaver somniferum... [more]
A0A7S2C1Q1_9STRA2.890e-2053.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI000E6FB4713.660e-2048.72maf-like protein DDB_G0281937 isoform X4 n=1 Tax=P... [more]
UPI00090146E54.750e-2050.00maf-like protein DDB_G0281937 isoform X1 n=3 Tax=I... [more]
Q01DW4_OSTTA1.120e-1951.28Maf-like protein n=2 Tax=Ostreococcus tauri TaxID=... [more]
A0A4Y7IAX5_PAPSO1.200e-1948.72Uncharacterized protein n=5 Tax=Papaver somniferum... [more]
A0A7I8JXT5_SPIIN2.710e-1950.00Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12751contigL-elsbetiae_contig12751:5015..5438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D8LH84
Preferred nameMAF
KEGG koko:K06287
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016119,GO:0016120,GO:0016853,GO:0016859,GO:0042214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046246,GO:0071704,GO:0090471,GO:1901576
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815463.2222462-CDS-L-elsbetiae_contig12751:5014..52001622815463.2222462-CDS-L-elsbetiae_contig12751:5014..5200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12751 5015..5200 -
1691682909.8786936-CDS-L-elsbetiae_contig12751:5014..52001691682909.8786936-CDS-L-elsbetiae_contig12751:5014..5200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12751 5015..5200 -
1622815463.2367833-CDS-L-elsbetiae_contig12751:5378..54381622815463.2367833-CDS-L-elsbetiae_contig12751:5378..5438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12751 5379..5438 -
1691682909.889525-CDS-L-elsbetiae_contig12751:5378..54381691682909.889525-CDS-L-elsbetiae_contig12751:5378..5438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12751 5379..5438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12751.2211.1prot_L-elsbetiae_contig12751.2211.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12751 5015..5438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12751.2211.1

>prot_L-elsbetiae_contig12751.2211.1 ID=prot_L-elsbetiae_contig12751.2211.1|Name=mRNA_L-elsbetiae_contig12751.2211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
DIVTGAQVSGVDTAEIFFKEIPDDVVTKLCDEGTVMQCAGGLMVEHILVQ
PYITKIDGSIDSAMGLSKALVDKLLEQIKQPL
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mRNA from alignment at L-elsbetiae_contig12751:5015..5438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12751.2211.1 ID=mRNA_L-elsbetiae_contig12751.2211.1|Name=mRNA_L-elsbetiae_contig12751.2211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=424bp|location=Sequence derived from alignment at L-elsbetiae_contig12751:5015..5438- (Laminarionema elsbetiae ELsaHSoW15)
GATATCGTGACGGGTGCCCAGGTGTCGGGGGTGGATACAGCAGAGATATT TTTCAAAGAGGTGAGACAAATAGTTGGCTGCTCTGTGCCTTGTTCTCTCC CAGCTCCAGGGTTCCGGAACTACCGCATAGCGATCGCCTCCATGATACCT GACAGCCATATACTACGGTATCGCCTCTCACACGCCACGAACCGGCCCGT TTATAATATATCCACTCTTGCATGGTGCGTTGCTCCAGATTCCGGACGAC GTCGTGACCAAGCTTTGCGACGAGGGCACCGTGATGCAGTGCGCCGGGGG GCTGATGGTGGAGCATATTTTGGTGCAGCCCTACATCACCAAAATAGACG GCTCTATAGATTCTGCGATGGGCCTGTCGAAAGCCTTGGTGGACAAGTTG CTCGAGCAGATCAAACAGCCATTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12751:5015..5438-

>mRNA_L-elsbetiae_contig12751.2211.1 ID=mRNA_L-elsbetiae_contig12751.2211.1|Name=mRNA_L-elsbetiae_contig12751.2211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig12751:5015..5438- (Laminarionema elsbetiae ELsaHSoW15)
GATATCGTGACGGGTGCCCAGGTGTCGGGGGTGGATACAGCAGAGATATT
TTTCAAAGAGGATATCGTGACGGGTGCCCAGGTGTCGGGGGTGGATACAG
CAGAGATATTTTTCAAAGAGATTCCGGACGACGTCGTGACCAAGCTTTGC
GACGAGGGCACCGTGATGCAGTGCGCCGGGGGGCTGATGGTGGAGCATAT
TTTGGTGCAGCCCTACATCACCAAAATAGACGGCTCTATAGATTCTGCGA
TGGGCCTGTCGAAAGCCTTGGTGGACAAGTTGCTCGAGCAGATCAAACAG
CCATTGATTCCGGACGACGTCGTGACCAAGCTTTGCGACGAGGGCACCGT
GATGCAGTGCGCCGGGGGGCTGATGGTGGAGCATATTTTGGTGCAGCCCT
ACATCACCAAAATAGACGGCTCTATAGATTCTGCGATGGGCCTGTCGAAA
GCCTTGGTGGACAAGTTGCTCGAGCAGATCAAACAGCCATTG
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