mRNA_L-elsbetiae_contig1275.2210.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1275.2210.1
Unique NamemRNA_L-elsbetiae_contig1275.2210.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1275.2210.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.720e-41
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:   52 SPSALAMAP-MDFPGAAGAGSPDPAAEKDPRQLDPALEGTAGDSYVKCGKCQACYPMDLEVLGRGRIIECSVCGNKWFQTAERALTLTENFLMK 330
            SP+AL+MAP MDF GA      +PA EKDPR++DP+L+G+AGD+YVKCGKCQACYPM+L+VLGRGRIIECSVCGN+WFQTAERALTLTENFLMK
Sbjct:  108 SPTALSMAPPMDFGGA------EPA-EKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMK 194
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BLAST of mRNA_L-elsbetiae_contig1275.2210.1 vs. uniprot
Match: A0A7S2FGA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGA3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.380e-10
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  172 GDSYVKCGKCQACYPMDLEVLGRGRIIECSVCGNKWFQTAERALTLTENFLMK 330
            G +Y +C KC+A Y +D++ +G+G+ + CSVC + W+Q+ ER  TL + F MK
Sbjct:   47 GSAYAQCSKCKAAYVVDIDEMGKGKKVTCSVCQHSWWQSTERLQTLRDGFTMK 99
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BLAST of mRNA_L-elsbetiae_contig1275.2210.1 vs. uniprot
Match: R7QQ59_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ59_CHOCR)

HSP 1 Score: 59.3 bits (142), Expect = 4.390e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  181 YVKCGKCQACYPMDLEVLG-RGRIIECSVCGNKWFQTAERALTLTE 315
            + KCG CQA Y +D +  G RG+ + CSVCGN+WFQ A+R +TL +
Sbjct:  106 FTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQ 151
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BLAST of mRNA_L-elsbetiae_contig1275.2210.1 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 56.6 bits (135), Expect = 2.920e-7
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:  148 DPALEGTAGDSYVKCGKCQACYPM---DLEVLGRGRIIECSVCGNKWFQTAERALTLTENF 321
            D A+ GT    YV+CG+C A Y +   DL   G+GR +ECSVCG+ W+Q+ +R   L+  F
Sbjct:   73 DLAMPGT----YVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGF 129
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BLAST of mRNA_L-elsbetiae_contig1275.2210.1 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-5
Identity = 19/52 (36.54%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:  175 DSYVKCGKCQACYPMDLEVLG---RGRIIECSVCGNKWFQTAERALTLTENF 321
            ++Y +CG+C   + +  E LG   +GR +ECSVCG+ W+Q  ++   + E F
Sbjct:   64 ETYARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGF 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1275.2210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE4.720e-4177.66RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2FGA3_9STRA1.380e-1043.40Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
R7QQ59_CHOCR4.390e-852.17RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S1Z4Z8_TRICV2.920e-744.26Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6V2PYU0_9STRA1.300e-536.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1275contigL-elsbetiae_contig1275:26686..27445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3.6e-33
Seed eggNOG ortholog2880.D7G7E1
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
EC4.3.1.17,4.3.1.19
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-04_003170.1
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815463.156709-CDS-L-elsbetiae_contig1275:26685..269131622815463.156709-CDS-L-elsbetiae_contig1275:26685..26913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1275 26686..26913 +
1691682909.8487947-CDS-L-elsbetiae_contig1275:26685..269131691682909.8487947-CDS-L-elsbetiae_contig1275:26685..26913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1275 26686..26913 +
1622815463.1755118-CDS-L-elsbetiae_contig1275:27343..274451622815463.1755118-CDS-L-elsbetiae_contig1275:27343..27445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1275 27344..27445 +
1691682909.8684368-CDS-L-elsbetiae_contig1275:27343..274451691682909.8684368-CDS-L-elsbetiae_contig1275:27343..27445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1275 27344..27445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1275.2210.1prot_L-elsbetiae_contig1275.2210.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1275 26686..27445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1275.2210.1

>prot_L-elsbetiae_contig1275.2210.1 ID=prot_L-elsbetiae_contig1275.2210.1|Name=mRNA_L-elsbetiae_contig1275.2210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
ATAVSPTGRRRPSSASSSPSALAMAPMDFPGAAGAGSPDPAAEKDPRQLD
PALEGTAGDSYVKCGKCQACYPMDLEVLGRGRIIECSVCGNKWFQTAERA
LTLTENFLMK
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mRNA from alignment at L-elsbetiae_contig1275:26686..27445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1275.2210.1 ID=mRNA_L-elsbetiae_contig1275.2210.1|Name=mRNA_L-elsbetiae_contig1275.2210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=760bp|location=Sequence derived from alignment at L-elsbetiae_contig1275:26686..27445+ (Laminarionema elsbetiae ELsaHSoW15)
GCTACGGCCGTGTCGCCCACCGGTCGGAGACGGCCCTCGTCCGCGTCTTC
GTCGCCCTCCGCGCTGGCCATGGCGCCGATGGATTTCCCCGGGGCGGCGG
GAGCGGGCTCGCCCGATCCGGCCGCCGAGAAGGACCCGCGACAGCTCGAC
CCGGCCCTCGAGGGGACCGCCGGGGACAGCTACGTCAAGTGCGGAAAGTG
CCAGGCCTGCTACCCCATGGATCTCGAGGTGTGGTTCTTGGTGCATATAC
ATGGCGTACATACGTACAACACATGTATGTGACGCCTACTTACCTGTAAC
GCATATTTACTTACCAAATCCATACCTCGGCGCGTGCGAGCTTTTTTGTT
CTGGAGGTAGACTATGTATGCCATTAGCAATTGCTTTGCTAGAATGGCGC
GCCTGGGATATCTTGAAAAGGAGGCCCTAGTTCCCATGTTTCGGAAGTGC
CAAACAGGCTTGCAAAATGTGTGCGAGAGTGGTCCCACGGTAAAAAACAC
GAACATCACGGCCTTTTGTGCTTGTCTCCTGGGCATCCGCGAATCGAGTG
GGAGGGGAAAATATCGCATCATGCGTCCGTGTACACTCCTGTGGAAAAAA
AAACTGTAGAAAAAATGCTGTCTCGTTTTCGCCCTCTCGACCCCCCCTCC
CCATGCAGGTCCTCGGCAGGGGGCGCATCATCGAGTGCTCCGTTTGCGGC
AACAAATGGTTCCAGACGGCGGAGCGCGCGCTCACCCTCACGGAGAACTT
CTTGATGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1275:26686..27445+

>mRNA_L-elsbetiae_contig1275.2210.1 ID=mRNA_L-elsbetiae_contig1275.2210.1|Name=mRNA_L-elsbetiae_contig1275.2210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig1275:26686..27445+ (Laminarionema elsbetiae ELsaHSoW15)
GCTACGGCCGTGTCGCCCACCGGTCGGAGACGGCCCTCGTCCGCGTCTTC
GTCGCCCTCCGCGCTGGCCATGGCGCCGATGGATTTCCCCGGGGCGGCGG
GAGCGGGCTCGCCCGATCCGGCCGCCGAGAAGGACCCGCGACAGCTCGAC
CCGGCCCTCGAGGGGACCGCCGGGGACAGCTACGTCAAGTGCGGAAAGTG
CCAGGCCTGCTACCCCATGGATCTCGAGGCTACGGCCGTGTCGCCCACCG
GTCGGAGACGGCCCTCGTCCGCGTCTTCGTCGCCCTCCGCGCTGGCCATG
GCGCCGATGGATTTCCCCGGGGCGGCGGGAGCGGGCTCGCCCGATCCGGC
CGCCGAGAAGGACCCGCGACAGCTCGACCCGGCCCTCGAGGGGACCGCCG
GGGACAGCTACGTCAAGTGCGGAAAGTGCCAGGCCTGCTACCCCATGGAT
CTCGAGGTCCTCGGCAGGGGGCGCATCATCGAGTGCTCCGTTTGCGGCAA
CAAATGGTTCCAGACGGCGGAGCGCGCGCTCACCCTCACGGAGAACTTCT
TGATGAAGGTCCTCGGCAGGGGGCGCATCATCGAGTGCTCCGTTTGCGGC
AACAAATGGTTCCAGACGGCGGAGCGCGCGCTCACCCTCACGGAGAACTT
CTTGATGAAG
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