mRNA_L-elsbetiae_contig12742.2203.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12742.2203.1
Unique NamemRNA_L-elsbetiae_contig12742.2203.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: D7G781_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G781_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 1.350e-129
Identity = 213/295 (72.20%), Postives = 246/295 (83.39%), Query Frame = 1 
Query:    1 QAALHERARGVLVRKAASSGAETEPTQQPASPVDGDG----ATSAADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEWLKDPKVFGNYNVAYVSAGSSQRGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADEWKVYAAASARPIKARALGAAAACGAVAATVRSAFLPAGLLAVASVVLVVTQGGTL 873
            +AA+   AR V V  AASS AE  P   PA  + GDG     ++AA+LVT +LGKIEGTNRG+DCT  ++  ID IIDQL+TLG DK+WL D +VFGNYNVAYVS+G SQRGNPAGGRWRGRVGR LF RT+EMFQHLVEP TAVNM+VFRAFG+LKGCVTLRG+F+AI D+PNFVKASFGPPL+NFLGKRGLTI++GPKSSV+LAATYVD+RIRLG GGRGSLFVFTRGG A+T  AD+WK+YAA SARP+KAR LGAAAACGAVAA  R AF+PA  LA+ S+VLV TQGG +
Sbjct:   30 KAAIRRAARRVSVETAASS-AEAGPP--PA--IGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLF-RTEEMFQHLVEPTTAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKRGLTIRSGPKSSVRLAATYVDERIRLGMGGRGSLFVFTRGGAADTPNADDWKIYAAESARPVKARILGAAAACGAVAAGARLAFVPATALALVSLVLVATQGGII 318
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BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A6H5JIG4_9PHAE (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG4_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 4.020e-90
Identity = 147/212 (69.34%), Postives = 174/212 (82.08%), Query Frame = 1 
Query:    1 QAALHERARGVLVRKAASSGAETEPTQQPASPVDGDGATSAADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEWLKDPKVFGNYNVAYVSAGSSQRGNPAGGRWRGRVGRCLFSR-TDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIR 633
            +A +   A  VLV  AASS AE  P       +  +  ++AA+LVT +LGKIEGTNRG+DCT  ++  ID IIDQL+TLG DK+WL D +VFGNYNVAYVS+G SQRGNPAGGRWRGRVGR LF + T+EMFQHLVEPATAVNM+VFRAFG+LKGCVTLRG+F+AI D+PNFVKASFGPPL+NFLGK GLTI++GPKSSV+LAATYVD+R R
Sbjct:   30 KAGVRRAAPRVLVETAASS-AEAGPPPPIGGDLPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFRQATEEMFQHLVEPATAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERDR 240
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A7S3UXI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXI2_HETAK)

HSP 1 Score: 180 bits (457), Expect = 1.140e-48
Identity = 91/181 (50.28%), Postives = 119/181 (65.75%), Query Frame = 1 
Query:  133 VTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEWLKDPKVFGNYNVAYVSAGSSQRGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTR 675
            V ++L  I GT+ G      +R  ID +I+ LS  G  +  L  P+++GNYNVAYVS+G SQRGNPAGGR+RG +G+ LF RT  +FQHLVEP   VNM+ F+  G+++GC TL G F      PN V+A F PP + F      T++ GP S V L+  Y+D R+RLG+GGRGSLFVFTR
Sbjct:   71 VDQLLELIRGTDAGSAVAPGKRAEIDALIEALSAAGGGQRNLARPEIYGNYNVAYVSSGGSQRGNPAGGRFRGALGKALF-RTTNLFQHLVEPNRVVNMVQFKLLGVVEGCTTLAGTFAPEGRDPNTVRARFQPPRVTFGRSGRCTLELGPPSEVVLSTPYLDGRVRLGRGGRGSLFVFTR 250
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BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A7S2Y058_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y058_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.200e-47
Identity = 91/200 (45.50%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:  133 VTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEWLKDPKVFGNYNVAYVSAGS--SQRGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAI--ADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADEWKVY 720
            + E+L  +  T+RG+  +  +R  ID +++++  L  + + L D ++FGNYNVAYVS G   SQ+GNPAGG +RG++GR  F +T  +FQHLV P   +NM+ F+  G   GC TL G FE I   D PN V+A F PP +        T+Q GP+S V L   YVDD++R+G+GGRGSLF+FTR GPA+   A+ W+ Y
Sbjct:  116 IEEILKIVPETDRGVLASEEQRTKIDGLLEKVENLNTNADTLSDERIFGNYNVAYVSTGKAPSQKGNPAGGGFRGKIGRKFF-QTTAVFQHLVAPNQVINMVQFKMLGRFPGCTTLMGTFEKINVPDLPNAVRAKFQPPRVTIGSSGKFTLQIGPQSQVTLGTPYVDDKVRVGRGGRGSLFLFTRDGPAQMEQAELWRKY 314
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BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A383V4T8_TETOB (PAP_fibrillin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4T8_TETOB)

HSP 1 Score: 170 bits (431), Expect = 1.240e-43
Identity = 94/215 (43.72%), Postives = 136/215 (63.26%), Query Frame = 1 
Query:  100 DGDGATSAADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEW--LKDPKVFGNYNVAYVSAGSSQRGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAI----------ADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADE 708
            DG    +AAD+V+ +L K++GT+ GI     ++  +D +I QL   G  ++   +++P +FGNYNVAY S+G  QRG PAGGR+RGR+GR LF  T  +FQ +++P  A N + F+ FG+L G V LRG    +          A   + V+  F PP+L+ LG  GL  + GP SSV+L+  Y+D+R+RLG+G RGSLFVFTRGG A+ +  D+
Sbjct:   43 DGVAGPAAADIVSTILDKVQGTDGGISLQPEQKREVDALISQLEAAGRSQQPRPMQNPLLFGNYNVAYTSSGDDQRGQPAGGRFRGRLGRLLFQTTG-VFQSVLQPDIATNKVTFKLFGVLPGAVGLRGTVVPVQAGQPHGRGTAGEGDTVRVLFEPPVLS-LGS-GLHFRIGPPSSVQLSTPYLDERVRLGRGSRGSLFVFTRGGAADKAGMDQ 254
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A250WT81_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WT81_9CHLO)

HSP 1 Score: 166 bits (420), Expect = 9.210e-43
Identity = 92/215 (42.79%), Postives = 133/215 (61.86%), Query Frame = 1 
Query:   73 PTQQPASPVDGDGATSAADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEWLKDPKVFGNYNVAYVSA--GSSQRGNPAGGRWRGRVGRCLFSRTDEMFQHLV--EPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIAD 705
            PT   + PV  +       LV +++ ++EGT+ GI+ + A++D ID ++D+L   G+    +KDP++ GNY V Y S      Q+G  AGGR+RG +GR LF +T  +FQ ++  +P  AVN + F   G++ G V LRG  E   D    V   F PP+L+F GK  L ++ GPKSSV+LA TY+D+RIR+G G RGSLF+FTRGG A+ +  D
Sbjct:   28 PTNTVSLPVQTEDHADLKALVDDIICRVEGTDGGINLSDAQKDEIDLLLDKLREAGKGSRPVKDPRLIGNYVVVYTSTRRAPGQKGQAAGGRFRGALGRSLF-KTTGVFQSVLAGDPPIAVNKVAFNLLGLIPGYVGLRGRVEPFGDDDESVSVYFDPPILSFAGK--LHLRIGPKSSVQLATTYLDERIRVGLGSRGSLFLFTRGGAADAADMD 239
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: D8TNC6_VOLCA (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TNC6_VOLCA)

HSP 1 Score: 162 bits (411), Expect = 6.650e-42
Identity = 98/218 (44.95%), Postives = 133/218 (61.01%), Query Frame = 1 
Query:   46 AASSGAETEPTQQPASPVDGDGATSAADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLG--EDKEWLKDPKVFGNYNVAYVSAGSSQR-GNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAE 690
            AA S A  E   QP+S  D      A  LV ++L  IEGT+ G+  +   R  +D ++++L  LG  +    L +P ++GNYNVAY S G SQ  G PAGGR+RGR+GR LF RT  +FQ +++P  A N + FR FG L G V LRG+     D  + V+  F PP+L+   +  L ++ G  SSV L  TY+D+R+RLG+G RGSLFVFTRGG A+
Sbjct:   63 AAVSPAPAETVPQPSSSAD-----EARQLVDQVLKTIEGTDSGLQISPQARAHVDALLERLEVLGAAQQPRPLDNPLLWGNYNVAYTSVGKSQEHGEPAGGRFRGRIGRALF-RTAGLFQSVLKPDLATNKVEFRLFGFLPGYVGLRGKVLPQGDTGDTVQVLFEPPMLSIANR--LHLKIGRFSSVVLTTTYLDERVRLGRGSRGSLFVFTRGGAAD 272
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A2P6TXW2_CHLSO (Sulfur stress regulator n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXW2_CHLSO)

HSP 1 Score: 171 bits (434), Expect = 1.200e-41
Identity = 105/219 (47.95%), Postives = 138/219 (63.01%), Query Frame = 1 
Query:   76 TQQPASPVDGDGATSAADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEW--LKDPKVFGNYNVAYVSAGSSQRGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIA------DRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADE 708
            T +PA+P       SAA+LV  +L KIEGT+ G   + A+R ++D  + +L  LGE K    L+DP VFGNY V YVSAG SQ G PAGGR+R  +G+ LF RT  + Q +++P    N + FR  G + G V LRG F +I       DR + VK  F PP+L+ LGK  + ++ GP SSV L  TYVD+R+RLGKG RGSLFVFTRGG A+ +  D+
Sbjct:   45 TAEPAAPAQPADTRSAAELVDFVLNKIEGTDGGDRISPADRQAVDAALARLDELGEAKAERPLEDPLVFGNYVVDYVSAGPSQYGAPAGGRFRSGLGKLLF-RTVLLAQSVLKPDIVTNKVEFRLLGFIPGSVGLRGRFVSIPEREGGEDRKDTVKVFFEPPVLS-LGK-DIHVRTGPPSSVVLKTTYVDERVRLGKGSRGSLFVFTRGGAADAAGMDQ 260
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A8J4AX21_9CHLO (PAP_fibrillin domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AX21_9CHLO)

HSP 1 Score: 165 bits (418), Expect = 1.270e-41
Identity = 93/199 (46.73%), Postives = 127/199 (63.82%), Query Frame = 1 
Query:  121 AADLVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEW--LKDPKVFGNYNVAYVSAGSSQ-RGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADE 708
            A  +V E+L  IE T+ G+  +   R  +D ++D+L TLG  ++   L +P ++GNYNVAY S G SQ RG PAGGR+RGR+GR LF RT  +FQ +++P  A N + FR FG L G V LRG      D  + V+  F PP+L+      L ++ G  SSV L+ TY+D+R+RLGKG RGSLFVFTRGG A+ +  D+
Sbjct:   84 ARHIVDEVLEAIEATDSGLQISPEARTRVDSLLDRLETLGTTQQPRPLDNPLLWGNYNVAYTSVGRSQERGEPAGGRFRGRIGRALF-RTAGLFQSVLKPDIATNKVEFRLFGFLPGYVGLRGRVLPQGDNGDTVQVIFEPPVLSIANS--LHLKIGKPSSVVLSTTYLDERVRLGKGSRGSLFVFTRGGAADAAEMDQ 279
[Close]
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Match: A0A2K3D377_CHLRE (PAP_fibrillin domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D377_CHLRE)

HSP 1 Score: 163 bits (413), Expect = 5.040e-41
Identity = 94/196 (47.96%), Postives = 124/196 (63.27%), Query Frame = 1 
Query:  130 LVTEMLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLG--EDKEWLKDPKVFGNYNVAYVSAGSSQ-RGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFRAFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKSSVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADE 708
            +V E+L  IEGT+ G+    A R  +D ++D+L  LG  +    L  P ++GNYNVAY S G SQ RG PAGGR+RG++GR LF RT  +FQ +++P  A N + F+ FG+L G V LRG      D  + V+  F PP+L    K  L I  G  SSV L+ TY+D+RIRLGKG RGSLFVFTRGG A+ +  D+
Sbjct:   83 IVDEVLKAIEGTDSGLSIDPATRKHVDGLLDKLEALGAAQQPRPLDSPLLWGNYNVAYTSVGRSQERGEPAGGRFRGKIGRALF-RTAGLFQSVLQPDIATNKVEFKLFGMLPGFVGLRGRVVPQGDAGDTVQVLFEPPVLAIADKLFLCI--GRTSSVVLSTTYLDERIRLGKGSRGSLFVFTRGGAADAAGMDQ 275
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12742.2203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G781_ECTSI1.350e-12972.20PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JIG4_9PHAE4.020e-9069.34PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A7S3UXI2_HETAK1.140e-4850.28Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y058_9STRA2.200e-4745.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A383V4T8_TETOB1.240e-4343.72PAP_fibrillin domain-containing protein n=1 Tax=Te... [more]
A0A250WT81_9CHLO9.210e-4342.79Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
D8TNC6_VOLCA6.650e-4244.95PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A2P6TXW2_CHLSO1.200e-4147.95Sulfur stress regulator n=1 Tax=Chlorella sorokini... [more]
A0A8J4AX21_9CHLO1.270e-4146.73PAP_fibrillin domain-containing protein n=1 Tax=Vo... [more]
A0A2K3D377_CHLRE5.040e-4147.96PAP_fibrillin domain-containing protein n=2 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12742contigL-elsbetiae_contig12742:198..5101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.6
Seed ortholog evalue6e-103
Seed eggNOG ortholog2880.D7G781
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28JTJ@1,2QS7D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-01_010730.1
Exons6
Model size1953
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12742.2203.1prot_L-elsbetiae_contig12742.2203.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12742 1230..4960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.2156675-UTR-L-elsbetiae_contig12742:197..12291622815462.2156675-UTR-L-elsbetiae_contig12742:197..1229Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12742 198..1229 -
1691682909.3599455-UTR-L-elsbetiae_contig12742:197..12291691682909.3599455-UTR-L-elsbetiae_contig12742:197..1229Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12742 198..1229 -
1622815462.3034372-UTR-L-elsbetiae_contig12742:4960..51011622815462.3034372-UTR-L-elsbetiae_contig12742:4960..5101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12742 4961..5101 -
1691682909.4232988-UTR-L-elsbetiae_contig12742:4960..51011691682909.4232988-UTR-L-elsbetiae_contig12742:4960..5101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12742 4961..5101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.2270381-CDS-L-elsbetiae_contig12742:1229..14131622815462.2270381-CDS-L-elsbetiae_contig12742:1229..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 1230..1413 -
1691682909.371371-CDS-L-elsbetiae_contig12742:1229..14131691682909.371371-CDS-L-elsbetiae_contig12742:1229..1413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 1230..1413 -
1622815462.2410302-CDS-L-elsbetiae_contig12742:1692..18021622815462.2410302-CDS-L-elsbetiae_contig12742:1692..1802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 1693..1802 -
1691682909.3793745-CDS-L-elsbetiae_contig12742:1692..18021691682909.3793745-CDS-L-elsbetiae_contig12742:1692..1802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 1693..1802 -
1622815462.258825-CDS-L-elsbetiae_contig12742:2374..25121622815462.258825-CDS-L-elsbetiae_contig12742:2374..2512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 2375..2512 -
1691682909.3871684-CDS-L-elsbetiae_contig12742:2374..25121691682909.3871684-CDS-L-elsbetiae_contig12742:2374..2512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 2375..2512 -
1622815462.2714245-CDS-L-elsbetiae_contig12742:3203..33181622815462.2714245-CDS-L-elsbetiae_contig12742:3203..3318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 3204..3318 -
1691682909.3953934-CDS-L-elsbetiae_contig12742:3203..33181691682909.3953934-CDS-L-elsbetiae_contig12742:3203..3318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 3204..3318 -
1622815462.2831082-CDS-L-elsbetiae_contig12742:4143..42921622815462.2831082-CDS-L-elsbetiae_contig12742:4143..4292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 4144..4292 -
1691682909.4066627-CDS-L-elsbetiae_contig12742:4143..42921691682909.4066627-CDS-L-elsbetiae_contig12742:4143..4292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 4144..4292 -
1622815462.2935436-CDS-L-elsbetiae_contig12742:4876..49601622815462.2935436-CDS-L-elsbetiae_contig12742:4876..4960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 4877..4960 -
1691682909.415045-CDS-L-elsbetiae_contig12742:4876..49601691682909.415045-CDS-L-elsbetiae_contig12742:4876..4960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12742 4877..4960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12742.2203.1

>prot_L-elsbetiae_contig12742.2203.1 ID=prot_L-elsbetiae_contig12742.2203.1|Name=mRNA_L-elsbetiae_contig12742.2203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
MLGKIEGTNRGIDCTGAERDSIDRIIDQLSTLGEDKEWLKDPKVFGNYNV
AYVSAGSSQRGNPAGGRWRGRVGRCLFSRTDEMFQHLVEPATAVNMIVFR
AFGILKGCVTLRGEFEAIADRPNFVKASFGPPLLNFLGKRGLTIQAGPKS
SVKLAATYVDDRIRLGKGGRGSLFVFTRGGPAETSIADEWKVYAAASARP
IKARALGAAAACGAVAATVRSAFLPAGLLAVASVVLVVTQGGTLGESTIP
DQVEPGAAA*
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mRNA from alignment at L-elsbetiae_contig12742:198..5101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12742.2203.1 ID=mRNA_L-elsbetiae_contig12742.2203.1|Name=mRNA_L-elsbetiae_contig12742.2203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4904bp|location=Sequence derived from alignment at L-elsbetiae_contig12742:198..5101- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGCGCTTCACGAGAGAGCGCGAGGTGTCTTAGTTCGCAAGGCGGC
TTCTTCTGGTGCTGAGACTGAGCCAACGCAGCAGCCGGCGTCGCCAGTCG
ACGGCGATGGAGCAACGAGCGCGGCGGATCTTGTGACGGAAATGCTAGGG
AAGATCGAGGGGACGAACCGGGGGATCGATTGCACGGGCGCAGAAAGGGA
TTCAATCGACCGCATTATCGACCAGGTCGGTGATGACAGCAGTAAGTAGT
CGTGTTTGGCCGAAGAGCTTCCATCCAGCCTGTTTTTGCAGCGCTACATA
CGGACACACATATCTATTGCTTGCTGTAGTTCAACGGCATTATTCATTTC
GCCATCGCCAACGTGCCACTGTGTACGCCGAACACTAGGTACCTAGTCTA
CCTGCCGACCGACCCGCTGCCTAGAAACCAGAAACCAGGCCCAGCCCCCG
ACTACAGAATTTGGGGTTGTACTCGCCACTGACTGAGCCCCCGCACTCTT
CTTTTATTCGAGCGAAGTGAGTTTCTTTTGCTCTGCTTTTATTTTAAATC
TCAGTCTGACGTTCTTCAGCGTAGGTTTCTTATCAGCGGGCCGGTAAGAG
TACTGCATGTGTGCCTTGGAAGGATAGCAGCCCACCACCACACTGCTCGC
CTGGCCTCGCCTCGCGTGGATGACTCTTGCTTGCCCGACTCCGACACGTT
TGTTCTTTCTCGTGTCCTGTTGGTTGCGGCCGTCAGCACCCTGTGTTATG
TATGTGCAACCGTTTTTATGTATTGCGAATAAATTAAAATATACTGCGTT
TTGTAACAGCTCAGCACCTTGGGCGAGGACAAGGAATGGTTGAAGGACCC
GAAGGTCTTTGGAAACTACAATGTCGCGTACGTCAGTGCCGGGTCTTCGC
AGCGCGGCAACCCCGCGGGAGGGCGGTGGAGGGGTCGGGTGGGGAGATGC
TTGTTCAGGTCGGTTCAGCCAGCGTTGATTGTTTGTTTGCACTAGATAAA
TAGATGCATACGTAGGCGGTGTACATAAAATGTTGCTGTCTTCGTTGTTT
TCTCGTTGTGAAAAGCCCTTCCGGACTTTGTTGGCGTTATTTTTTCCATT
TGAAACGATCTATTTGTTGTACATATGTACGCATGTACGTGCCACCTTCG
GCCACGACGTTTATCGACAAGTGCAAGCAGGATGAGGCGCAGGTGTACCC
GGTCGGTTCTTGACGGCTGTTGAAGGGCGATGAGCGATAGGGAGATACAC
GATCGTGCCCCTTTCGTGGTCATGGCAGACCTCGGTACTCGTACACATGC
GGCGCTAAGCTTTTGGTGAACGCCCCTGTTTTTGGGCTGTAAACTAAAAA
ATGCAGACTGGTTGAGAAGCGTGTTTGTTGCATCTATCATTTTAAACTGA
AATAAAAAAAAAAGCAAATCCCGAACCACAAAACAGAATGCAGTTGGTGA
CCCACTCCGAGGATGCGAGACACCATGCGCGAAGCTGCAGCAAGTTTCGA
ATGAAATGTCTGCAGAGAGAAGCTTTAAACCCCCTCGCACGCCCGAAGAC
AAAAGCTTAACTGCATGCGCATTTCGCACACTTTCGTGCCAGCGTCGTAC
CCGCACCGTGCCCGACGGCCTGCTGCCACGGGCTGCCCTGTCCGGGCACA
CGCACAGATGCGTTACGTACGTTACGTCGTCTCACGGATGTTTCCCCCCC
AACACCAACCGCGGTGCGCTCACTTGCGTGCGCATGGCATGCCTGCCTAC
GTGTCTATCTATCTAAATATATCGTTGGATGAGCAGGACGGACGAGATGT
TCCAGCACCTTGTGGAGCCGGCGACGGCGGTCAACATGATCGTCTTCAGA
GCTTTCGGCATACTCAAAGGGTGCGTCACCTTGCGAGGCGAGTTCGAGGT
GCGTGCACAGATCCATTTAGTTATACACCGGACGAACTGACGGCAGACAG
GATATGTGCCGTGGTTTGCAGCAGCGAGCGGCCTTTGCTGCGCGACTGAG
TGTTGTCGTGGAGCGTCGAGTATCAGTGTTTTTGCTGGAGTTGCTGTTAC
TGTGCAACCAAGCGGACCGGTTTTTGCTACAGCAGTGCAGAGAGGCGTGA
GCATTCGAAGATATGGCAACGCCTACATAGCGTGCTTTTTGCACTGGAGT
TAAGCGCGACAACTTGTACTGGCGAGGCAGCGGGGTGGTGGTACTTACCT
GCCGAGACCGTCAGGGTCGCAAATCGCCTCCGACCGAAAATGCGTTTGCT
TCATGTGGGGTCCCCCCTCTTTTTCTTACTTCTTCCTCCTTGTTTTCTCT
GAACAGCCCCAGTAGCGTACTGTTTTGTCGTGTTTGCATGTCCCGTGGCT
GTATTATGCCTTGCAGCCGGGGGCAGAGCACCAAACGCTTTCAGTTCGTA
AGTTAGGGAAGTCTTGCCGCGGCTGTTACTTCTCTGCACGCAGAGGCTCA
GGACACACGCCGCCGCGCAAGTGTTCGTTTCGCCCCAACCGCCGCGACGT
GCACAGCAGCAGTAAACTGAGTTTCCCACTCCCATGTTGGACCCTTCCCC
GCTCGTCACGTGGATGGTCTGTGTTCACCCATTATTTAGGCAATCGCGGA
CAGACCAAACTTCGTTAAAGCCTCCTTCGGGCCGCCACTTTTGAACTTCC
TGGGAAAGCGCGGATTAACCATACAGGCCGGGCCGAAGAGCAGCGTGAAG
CTGGCGGCTACTTACGTTGACGACAGGGTAAGCGTGCTGCAGAGGGATAC
GTAGAAAGGATCCTCCGTATCTACACTGAATCCGTTTTTTTGTTGTCCAC
TGCATCGTGTCTCCGCAAGAGTGTTTTTTTCCCAGCCCCGCGTTCCAAAT
AACTGCTGTATCTTGCGCACATTTTCGCTGTTTGGAGCTGATCGTTTCTT
CGCCTAGATTCAGGTATACCGCCCGCGATGCGTACGCGAACGTTTTGCTG
TATTTACCGGCTGCTTTAGTGCTGTCAAGTATTGTTCCACACCGCTACAA
GAAGTCTGCTGCTGTATACTTCACGACGGGGGATATCACGCCGCCGGTCA
CAGGCACCCTTTGGCGCTTTTCAGACAAAATAACTACACCATTATATCGG
GGCATTTCTTGCCAGTTCGTACCTACACGCTGGTACGGAGTAAGCGCTTC
TCGCGCTCGCGCCAGACCTACCGACGTCTTTTGGTAATTTCGGTGCCGCG
ATAAGACCGTTCAGCAGAAACCAATTAACCCGGAGGACACACATCTACAT
GCGCAGACAATTAATTCCTTTCGTTTCATCCTGTTGGACACACACGCAGA
TTCGGCTCGGAAAGGGCGGACGGGGCAGCCTGTTCGTCTTCACCAGGGGT
GGCCCCGCCGAAACTTCGATAGCGGATGAGTGGAAAGTCTACGCCGCTGC
GAGCGCAAGGTGATTGAGCTCCTGCTGCTGCAACAGTATCTATGTATGCA
GTCAGCAAGGAAAGAGGGGGGTGCTGGTAACTTACTTTTTTTTTGTTAGA
CTCAGGGGGGAGGCGTCGCACGGTATGGGTTTGGATCGACAGGCGTTCTC
GTTATACTGCTCGTTAAACCTCGCCACCTTCTATCGGGGTGAAACCACCG
ATTTGAGCAAACTCATATTCATCCGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCCCGTTCTGTCGTTCACCCTGTTCATCTCACAGGCCCATAAAGGC
GAGAGCCTTGGGCGCTGCGGCGGCGTGTGGGGCCGTGGCGGCTACCGTGC
GCTCAGCGTTCCTCCCGGCGGGCCTCCTCGCCGTTGCGTCCGTAGTGTTG
GTTGTAACCCAGGGAGGAACTCTCGGGGAAAGCACAATCCCCGACCAGGT
TGAGCCAGGGGCGGCGGCGTAGTCCATGTTCTCTACCGGATGCATACTTG
CTTTTTTTTGGCAGGTTTTGGGGCGCTGCCACAACCAGAAAAAATAAGGC
CGCCTTGGTTGTATGAACAACTTTGGCCCCGTACGGAAATGATGCCCGAT
TTGACGGATAAATGGGAGTGAACCTTGAACCTTCCTTGCACATGCTCTGC
TTGTAGTCTGTGGGATGTAAACCTTGTTGCTTGCGGTTGTATCTGGCAGG
CTCACAGAGTGACCACTCTGTAAAAGCACACCTTCGTTTGTATTCTGTAA
CGAAGTCTAGACTAAACCTACAGTTCTATTAGTGTGTGACTGAAATGTTT
TGATCGGTCGCAACTTTTGACTACGGGCACTGATGATTTCGAACAAAAAA
AAACTTCCATGATGACCGTGACATTGCGAACAATAGTTGACTTTTTTTTT
GTTTTTGAAAAGGTAAATATTTGGCATACATTATTCAAGATAAAAATATA
AAAAAAAGTGAAAAAAAAATACCCGATCCAAATTTCGAACTGCTGACCTA
GGCCCTGGGCAAAAACTGTCCTTTCCATCACAGCGCACCGGTTTCAAAGC
GAAATTATTGTCGAAATATCTACGTGCTTAGATAGCCGAGTACACTGTGC
GAGTGTTTTTCTGAGTTTTTTTTTCGGAATCGGTGCACGACATGCCGAGC
TATCCCCATGTTGAGGCTGCCAATTTTTTTTTGCTTGAACTGGGTACGGG
ATGTACGTTTTTTTTTGTGTGTATTGTACGGGTTTTGATTTTTATCGACG
CTTCGGAAAAAAGTTCCGGAATGGTTCCGCCGCAGTAAAATAGCTGAAAC
AATTTTTGGTGGGTTCGACGTGGTTGCTGAGGTATTTTGGTTTTAGTGGG
TGGGGTGAAATACCTTCTGAGGCAATGAATGGTATTGTGCCCATAACTTT
GTTCGTAGTGCGAACCTGCCGACATAATAAGAGGGCGCATTCGATCGCTC
TTCTTGGCGAGAGCTTTTTTTTTTGGGCAGCGGCCAAAACAAGGTACACC
CTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12742:198..5101-

>mRNA_L-elsbetiae_contig12742.2203.1 ID=mRNA_L-elsbetiae_contig12742.2203.1|Name=mRNA_L-elsbetiae_contig12742.2203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig12742:198..5101- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAGGGAAGATCGAGGGGACGAACCGGGGGATCGATTGCACGGGCGC
AGAAAGGGATTCAATCGACCGCATTATCGACCAGATGCTAGGGAAGATCG
AGGGGACGAACCGGGGGATCGATTGCACGGGCGCAGAAAGGGATTCAATC
GACCGCATTATCGACCAGCTCAGCACCTTGGGCGAGGACAAGGAATGGTT
GAAGGACCCGAAGGTCTTTGGAAACTACAATGTCGCGTACGTCAGTGCCG
GGTCTTCGCAGCGCGGCAACCCCGCGGGAGGGCGGTGGAGGGGTCGGGTG
GGGAGATGCTTGTTCAGCTCAGCACCTTGGGCGAGGACAAGGAATGGTTG
AAGGACCCGAAGGTCTTTGGAAACTACAATGTCGCGTACGTCAGTGCCGG
GTCTTCGCAGCGCGGCAACCCCGCGGGAGGGCGGTGGAGGGGTCGGGTGG
GGAGATGCTTGTTCAGCAGGACGGACGAGATGTTCCAGCACCTTGTGGAG
CCGGCGACGGCGGTCAACATGATCGTCTTCAGAGCTTTCGGCATACTCAA
AGGGTGCGTCACCTTGCGAGGCGAGTTCGAGCAGGACGGACGAGATGTTC
CAGCACCTTGTGGAGCCGGCGACGGCGGTCAACATGATCGTCTTCAGAGC
TTTCGGCATACTCAAAGGGTGCGTCACCTTGCGAGGCGAGTTCGAGGCAA
TCGCGGACAGACCAAACTTCGTTAAAGCCTCCTTCGGGCCGCCACTTTTG
AACTTCCTGGGAAAGCGCGGATTAACCATACAGGCCGGGCCGAAGAGCAG
CGTGAAGCTGGCGGCTACTTACGTTGACGACAGGGCAATCGCGGACAGAC
CAAACTTCGTTAAAGCCTCCTTCGGGCCGCCACTTTTGAACTTCCTGGGA
AAGCGCGGATTAACCATACAGGCCGGGCCGAAGAGCAGCGTGAAGCTGGC
GGCTACTTACGTTGACGACAGGATTCGGCTCGGAAAGGGCGGACGGGGCA
GCCTGTTCGTCTTCACCAGGGGTGGCCCCGCCGAAACTTCGATAGCGGAT
GAGTGGAAAGTCTACGCCGCTGCGAGCGCAAGATTCGGCTCGGAAAGGGC
GGACGGGGCAGCCTGTTCGTCTTCACCAGGGGTGGCCCCGCCGAAACTTC
GATAGCGGATGAGTGGAAAGTCTACGCCGCTGCGAGCGCAAGGCCCATAA
AGGCGAGAGCCTTGGGCGCTGCGGCGGCGTGTGGGGCCGTGGCGGCTACC
GTGCGCTCAGCGTTCCTCCCGGCGGGCCTCCTCGCCGTTGCGTCCGTAGT
GTTGGTTGTAACCCAGGGAGGAACTCTCGGGGAAAGCACAATCCCCGACC
AGGTTGAGCCAGGGGCGGCGGCGTAGGCCCATAAAGGCGAGAGCCTTGGG
CGCTGCGGCGGCGTGTGGGGCCGTGGCGGCTACCGTGCGCTCAGCGTTCC
TCCCGGCGGGCCTCCTCGCCGTTGCGTCCGTAGTGTTGGTTGTAACCCAG
GGAGGAACTCTCGGGGAAAGCACAATCCCCGACCAGGTTGAGCCAGGGGC
GGCGGCGTAG
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