mRNA_L-elsbetiae_contig12729.2197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12729.2197.1
Unique NamemRNA_L-elsbetiae_contig12729.2197.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12729.2197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12729contigL-elsbetiae_contig12729:2002..2991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size415
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12729.2197.1prot_L-elsbetiae_contig12729.2197.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12729 2002..2991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.7082906-CDS-L-elsbetiae_contig12729:2001..20851622815461.7082906-CDS-L-elsbetiae_contig12729:2001..2085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2002..2085 -
1691682909.0729065-CDS-L-elsbetiae_contig12729:2001..20851691682909.0729065-CDS-L-elsbetiae_contig12729:2001..2085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2002..2085 -
1622815461.7200694-CDS-L-elsbetiae_contig12729:2400..25651622815461.7200694-CDS-L-elsbetiae_contig12729:2400..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2401..2565 -
1691682909.08142-CDS-L-elsbetiae_contig12729:2400..25651691682909.08142-CDS-L-elsbetiae_contig12729:2400..2565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2401..2565 -
1622815461.731981-CDS-L-elsbetiae_contig12729:2702..27741622815461.731981-CDS-L-elsbetiae_contig12729:2702..2774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2703..2774 -
1691682909.090579-CDS-L-elsbetiae_contig12729:2702..27741691682909.090579-CDS-L-elsbetiae_contig12729:2702..2774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2703..2774 -
1622815461.741613-CDS-L-elsbetiae_contig12729:2898..29911622815461.741613-CDS-L-elsbetiae_contig12729:2898..2991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2899..2991 -
1691682909.1014562-CDS-L-elsbetiae_contig12729:2898..29911691682909.1014562-CDS-L-elsbetiae_contig12729:2898..2991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12729 2899..2991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12729.2197.1

>prot_L-elsbetiae_contig12729.2197.1 ID=prot_L-elsbetiae_contig12729.2197.1|Name=mRNA_L-elsbetiae_contig12729.2197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MEPEYSSELTTQSTKALTTIYDPEDPSGNTMMPWAKYIITKFLVRLMYLV
LFLTVAKTVVPKQTATKASSRDTIAEAEAIVAAWDNTIAGADTQAATIQA
SSRDTIAEAEARAADALEEAEARAADTVAEAEAIRAAW
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mRNA from alignment at L-elsbetiae_contig12729:2002..2991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12729.2197.1 ID=mRNA_L-elsbetiae_contig12729.2197.1|Name=mRNA_L-elsbetiae_contig12729.2197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig12729:2002..2991- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCGGAATATTCCAGTGAGCTAACCACGCAGTCGACCAAGGCTCT
AACCACCATATACGACCCCGAGGATCCCTCCGGCAACACCATGGTGAGGG
CGCCTGATAAAAGACTGTGACAATGTGCGAACTGTTGTGCGAAAATATAA
AAGACTGTGACGAGATATAGGCGCAAAACCACTCACCCCCTTAATCGTTC
GGACCGTGTCGTGCCAGATGCCTTGGGCCAAGTACATCATCACGAAGTTC
CTGGTTCGGCTGATGTACCTGGTGCTGTTTCTGACGGTGGTGAGTTCACG
GTGATACTGTAGTTAAGAAGTGTCACGTAATGCTCATTCTTGCCATATCT
ATCGGGCCGATTTTTTGTCAAAATAAGCCGAAATTTAAACAAACCAACAC
CAACTCTTATTCGTAACCCCTGTCAGGCGAAAACAGTTGTGCCCAAACAA
ACGGCCACGAAGGCTTCGAGTAGAGACACCATCGCGGAGGCGGAGGCCAT
CGTGGCAGCGTGGGACAACACCATCGCGGGCGCGGATACACAGGCGGCCA
CTATCCAGGCTTCGAGCAGAGACACCATCGCGGAGGCGGAGGCACGGGCG
GCGGACACCGTGGCAGAGGCGGAGGCTATCAGAGCAGCGTGGGAGACCAA
AATGACGGCGGCCGTGGGACATACGAAGGCGATCAAGGAAGATGCGGAGG
CGCAGGCGGCCAACACCATCGCGGAGGCGGATGTACATGCGGCCATTACC
CAGGCTTCGAGCAGCGACACCATCGCGGAGGCGGAGGCACGGGCGGCGGA
CACCATCATGGAAGCCGATGTACAGGCGGCCAACATCATCGCGGGCGCGG
ATACACAGGCGGCCACTATCCAGGCTTCGAGCAGAGACACCATCGCGGAG
GCGGAGGCACGGGCGGCGGACGCCTTGGAAGAGGCGGAGGCACGGGCGGC
GGACACCGTGGCAGAGGCGGAGGCCATCAGGGCAGCGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12729:2002..2991-

>mRNA_L-elsbetiae_contig12729.2197.1 ID=mRNA_L-elsbetiae_contig12729.2197.1|Name=mRNA_L-elsbetiae_contig12729.2197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig12729:2002..2991- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCGGAATATTCCAGTGAGCTAACCACGCAGTCGACCAAGGCTCT
AACCACCATATACGACCCCGAGGATCCCTCCGGCAACACCATGATGGAGC
CGGAATATTCCAGTGAGCTAACCACGCAGTCGACCAAGGCTCTAACCACC
ATATACGACCCCGAGGATCCCTCCGGCAACACCATGATGCCTTGGGCCAA
GTACATCATCACGAAGTTCCTGGTTCGGCTGATGTACCTGGTGCTGTTTC
TGACGGTGATGCCTTGGGCCAAGTACATCATCACGAAGTTCCTGGTTCGG
CTGATGTACCTGGTGCTGTTTCTGACGGTGGCGAAAACAGTTGTGCCCAA
ACAAACGGCCACGAAGGCTTCGAGTAGAGACACCATCGCGGAGGCGGAGG
CCATCGTGGCAGCGTGGGACAACACCATCGCGGGCGCGGATACACAGGCG
GCCACTATCCAGGCTTCGAGCAGAGACACCATCGCGGAGGCGGAGGCGAA
AACAGTTGTGCCCAAACAAACGGCCACGAAGGCTTCGAGTAGAGACACCA
TCGCGGAGGCGGAGGCCATCGTGGCAGCGTGGGACAACACCATCGCGGGC
GCGGATACACAGGCGGCCACTATCCAGGCTTCGAGCAGAGACACCATCGC
GGAGGCGGAGGCACGGGCGGCGGACGCCTTGGAAGAGGCGGAGGCACGGG
CGGCGGACACCGTGGCAGAGGCGGAGGCCATCAGGGCAGCGTGGGCACGG
GCGGCGGACGCCTTGGAAGAGGCGGAGGCACGGGCGGCGGACACCGTGGC
AGAGGCGGAGGCCATCAGGGCAGCGTGG
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