mRNA_L-elsbetiae_contig12725.2195.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12725.2195.1
Unique NamemRNA_L-elsbetiae_contig12725.2195.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12725.2195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12725contigL-elsbetiae_contig12725:104..1918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size376
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.5785418-CDS-L-elsbetiae_contig12725:103..2361622815461.5785418-CDS-L-elsbetiae_contig12725:103..236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12725 104..236 +
1691682909.010383-CDS-L-elsbetiae_contig12725:103..2361691682909.010383-CDS-L-elsbetiae_contig12725:103..236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12725 104..236 +
1622815461.591013-CDS-L-elsbetiae_contig12725:1677..19161622815461.591013-CDS-L-elsbetiae_contig12725:1677..1916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12725 1678..1916 +
1691682909.0202503-CDS-L-elsbetiae_contig12725:1677..19161691682909.0202503-CDS-L-elsbetiae_contig12725:1677..1916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12725 1678..1916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12725.2195.1prot_L-elsbetiae_contig12725.2195.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12725 104..1916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12725.2195.1

>prot_L-elsbetiae_contig12725.2195.1 ID=prot_L-elsbetiae_contig12725.2195.1|Name=mRNA_L-elsbetiae_contig12725.2195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
TKRQHAAGIWTGRRTGVVIDESKITKTADGFDSIESFFKCVRAAEEEAST
PGGTSAGPSTPGSGSVSGFETATPGSGASGSVPTGGAPPSTASPGVHSGD
DMADFDGGETETDDGGGSGEDVDV
back to top

mRNA from alignment at L-elsbetiae_contig12725:104..1918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12725.2195.1 ID=mRNA_L-elsbetiae_contig12725.2195.1|Name=mRNA_L-elsbetiae_contig12725.2195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1815bp|location=Sequence derived from alignment at L-elsbetiae_contig12725:104..1918+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAAGCGCCAGCACGCCGCCGGCATATGGACGGGGAGGCGGACAGGGGT
GGTGATCGACGAGTCGAAGATCACCAAGACCGCGGACGGGTTCGACAGCA
TCGAGTCTTTCTTCAAATGCGTACGCGCAGCAGGTGTGTGTGTGTGTGTG
TGTGCGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATG
TATGCTTGTATTATATGCGTAGTAAAATAACGCGACTTTCGTGCGCACAA
CCCGATAAGCAGTCACGACAGCGGTACGTAGCTCCGTGTTGTTGTTGCGG
TGGGTCACCCCACACCCACACTCACGCCCACACCCTCGTGCCGTCTCCCC
GGCCTGAGCGAGCGTCGGAGTCCCGATACGTTTTTTTCAAGTTTGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGAAGGAAAACCCCGCCCGTGGGGGGGG
AGTTGGTTTTCAAAAACTTTCCGGTTTCTCCCCNNNNNNNNNNCCCCCCC
CCGCCCCGCCGCCCCGGGGGGGGGGCGGGGGGGCGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAA
GGGGCTAATAGAACACTCGCCCGTGTGAGAGAGTATGGTTCTTAAAAACT
TTCTCGTTTGTCACCGCGGGAGGTTGTTGGAATTTGTTTGTTTTTTGTGC
AGGAGCAAATTACACACGAAGCAAATGTTAATGTTTTTTACTCCTGCCGT
GCCAAACAAGAGCAACGGGCTCCGTGCCCGTTTGGCGCGGGGGGGGGGGG
GGGGGTTTGTGCGTGCTGAGTACTCCGGGTATCTTAAAAAAAAAAAAAGA
AACAAAGAAGGAACCTACCCCCCNNNNNNNNNNTACCTTTCTGAGCCCCG
CCGTGCCGTCCAGGGACGACGGGCTATGCCAAGGTTTGGGGGGGGGGGGG
GGGGGGGCGTGTTTGTGCGTGCTGAGTACTCCGGGTATCTTAAAAAAAAA
AAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGGACTCGATAT
TATGGGGTTCAAACGGTATTCCATCCATACAGTGACGTAATATTTGGCGA
AGCGAGCAGAAAAACAACCTAGAATATCAGAAGAGTTCTTCCGTCACGAA
CCGTTACCACGTTGTTCGAGACGAAAGACCCTATAACCCTGGGTGCGGGT
TGTGGGGTGTGCGGTGTCGGGTTTGGAGCATTTTGGCAGGCGAAAAGGGA
ACCCACGCGACAGCACAGGCGGGTTGGTTAGTGTGATCGCGGTCTCTCGT
TTATTTTTCTGGTGAACATGCAATGTATATAAGTGTTTAATGTAGTTTAT
GTTGTAGAGCGTGCTTTCTTTTTTTCCATCGGTCTTTTTTTTTTGTTTCG
TTTGCTTGTTGCGCCTCTCTTGAATCACCCGCATGGCTCATGTACACGTA
CGCACTGCTGCCACCGCCGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGT
CGCTGTCGCCGCCTCCGCCGCCGCCGCCCTTTTTTTCACGCCCCCCCCCC
CGCTCCTGCTCTTTTCCTCAACAGAGGAAGAGGCTTCGACCCCCGGCGGG
ACGTCAGCGGGCCCGTCCACGCCGGGGTCCGGTAGCGTCAGCGGCTTCGA
GACCGCCACCCCTGGCAGTGGTGCCAGCGGCTCGGTGCCCACCGGGGGGG
CGCCTCCGTCGACGGCATCGCCGGGTGTACACAGCGGCGACGACATGGCC
GACTTCGATGGCGGGGAGACGGAGACGGACGACGGGGGGGGGAGCGGCGA
GGACGTGGACGTCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12725:104..1918+

>mRNA_L-elsbetiae_contig12725.2195.1 ID=mRNA_L-elsbetiae_contig12725.2195.1|Name=mRNA_L-elsbetiae_contig12725.2195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig12725:104..1918+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAAGCGCCAGCACGCCGCCGGCATATGGACGGGGAGGCGGACAGGGGT
GGTGATCGACGAGTCGAAGATCACCAAGACCGCGGACGGGTTCGACAGCA
TCGAGTCTTTCTTCAAATGCGTACGCGCAGCAGACCAAGCGCCAGCACGC
CGCCGGCATATGGACGGGGAGGCGGACAGGGGTGGTGATCGACGAGTCGA
AGATCACCAAGACCGCGGACGGGTTCGACAGCATCGAGTCTTTCTTCAAA
TGCGTACGCGCAGCAGAGGAAGAGGCTTCGACCCCCGGCGGGACGTCAGC
GGGCCCGTCCACGCCGGGGTCCGGTAGCGTCAGCGGCTTCGAGACCGCCA
CCCCTGGCAGTGGTGCCAGCGGCTCGGTGCCCACCGGGGGGGCGCCTCCG
TCGACGGCATCGCCGGGTGTACACAGCGGCGACGACATGGCCGACTTCGA
TGGCGGGGAGACGGAGACGGACGACGGGGGGGGGAGCGGCGAGGACGTGG
ACGTCAGGAAGAGGCTTCGACCCCCGGCGGGACGTCAGCGGGCCCGTCCA
CGCCGGGGTCCGGTAGCGTCAGCGGCTTCGAGACCGCCACCCCTGGCAGT
GGTGCCAGCGGCTCGGTGCCCACCGGGGGGGCGCCTCCGTCGACGGCATC
GCCGGGTGTACACAGCGGCGACGACATGGCCGACTTCGATGGCGGGGAGA
CGGAGACGGACGACGGGGGGGGGAGCGGCGAGGACGTGGACGTC
back to top