mRNA_L-elsbetiae_contig1272.2189.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1272.2189.1
Unique NamemRNA_L-elsbetiae_contig1272.2189.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1272.2189.1 vs. uniprot
Match: A0A6H5KJJ4_9PHAE (Fatty acyl-CoA reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.620e-17
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   16 VVDDPVGNIFRPGTRASHDFYAPCLVTETAST--GGDRSSATAVSNTEPAAVTTAGDANGAVVFLTGVTGLVGQMVLFDLLRQGAAAA 273
            V DDPVG +FRPGTRAS DF AP L+ + +S+  GG  S    V+    A  T A + +GAVVFLTGVTGLVGQMVLFDLLRQGAA +
Sbjct:  165 VDDDPVGCLFRPGTRASRDFCAPRLMPDASSSVRGGCHS----VNGGSTA--TAAAEGSGAVVFLTGVTGLVGQMVLFDLLRQGAAVS 246
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BLAST of mRNA_L-elsbetiae_contig1272.2189.1 vs. uniprot
Match: D7FUE9_ECTSI (Alkylglycerone-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.860e-7
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  160 AVTTAGDANGAVVFLTGVTGLVGQMVLFDLLRQGAAAA 273
            A   A + +GAVVFLTGVTGLVGQMVLFDLLRQGAAA+
Sbjct:   21 ATAAAAEGSGAVVFLTGVTGLVGQMVLFDLLRQGAAAS 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1272.2189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJJ4_9PHAE2.620e-1761.36Fatty acyl-CoA reductase n=1 Tax=Ectocarpus sp. CC... [more]
D7FUE9_ECTSI2.860e-778.95Alkylglycerone-phosphate synthase n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1272contigL-elsbetiae_contig1272:23168..23444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.1412525-CDS-L-elsbetiae_contig1272:23167..234431622815461.1412525-CDS-L-elsbetiae_contig1272:23167..23443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 23168..23443 +
1691682908.7989264-CDS-L-elsbetiae_contig1272:23167..234431691682908.7989264-CDS-L-elsbetiae_contig1272:23167..23443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 23168..23443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1272.2189.1prot_L-elsbetiae_contig1272.2189.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1272 23168..23443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1272.2189.1

>prot_L-elsbetiae_contig1272.2189.1 ID=prot_L-elsbetiae_contig1272.2189.1|Name=mRNA_L-elsbetiae_contig1272.2189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
CGGNNVVDDPVGNIFRPGTRASHDFYAPCLVTETASTGGDRSSATAVSNT
EPAAVTTAGDANGAVVFLTGVTGLVGQMVLFDLLRQGAAAAR
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mRNA from alignment at L-elsbetiae_contig1272:23168..23444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1272.2189.1 ID=mRNA_L-elsbetiae_contig1272.2189.1|Name=mRNA_L-elsbetiae_contig1272.2189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=277bp|location=Sequence derived from alignment at L-elsbetiae_contig1272:23168..23444+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGGCGGAAACAACGTCGTCGATGACCCGGTCGGGAATATATTTAGACC
TGGCACGCGGGCGTCGCACGATTTCTACGCCCCCTGCTTGGTGACGGAGA
CGGCAAGCACGGGGGGAGACCGTTCCAGCGCCACCGCGGTGTCGAACACG
GAACCGGCGGCGGTCACGACTGCAGGCGATGCAAATGGGGCGGTGGTGTT
CTTGACGGGCGTTACGGGGCTTGTGGGGCAGATGGTTCTCTTCGACCTGC
TCAGGCAGGGCGCGGCGGCAGCAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1272:23168..23444+

>mRNA_L-elsbetiae_contig1272.2189.1 ID=mRNA_L-elsbetiae_contig1272.2189.1|Name=mRNA_L-elsbetiae_contig1272.2189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1272:23168..23444+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGGCGGAAACAACGTCGTCGATGACCCGGTCGGGAATATATTTAGACC
TGGCACGCGGGCGTCGCACGATTTCTACGCCCCCTGCTTGGTGACGGAGA
CGGCAAGCACGGGGGGAGACCGTTCCAGCGCCACCGCGGTGTCGAACACG
GAACCGGCGGCGGTCACGACTGCAGGCGATGCAAATGGGGCGGTGGTGTT
CTTGACGGGCGTTACGGGGCTTGTGGGGCAGATGGTTCTCTTCGACCTGC
TCAGGCAGGGCGCGGCGGCAGCAAGGTGCGGCGGAAACAACGTCGTCGAT
GACCCGGTCGGGAATATATTTAGACCTGGCACGCGGGCGTCGCACGATTT
CTACGCCCCCTGCTTGGTGACGGAGACGGCAAGCACGGGGGGAGACCGTT
CCAGCGCCACCGCGGTGTCGAACACGGAACCGGCGGCGGTCACGACTGCA
GGCGATGCAAATGGGGCGGTGGTGTTCTTGACGGGCGTTACGGGGCTTGT
GGGGCAGATGGTTCTCTTCGACCTGCTCAGGCAGGGCGCGGCGGCAGCAA
GG
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