mRNA_L-elsbetiae_contig1272.2186.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1272.2186.1
Unique NamemRNA_L-elsbetiae_contig1272.2186.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1272.2186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1272contigL-elsbetiae_contig1272:14082..15778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1019
Cds size1017
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1272.2186.1prot_L-elsbetiae_contig1272.2186.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1272 14082..15777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815460.8667479-CDS-L-elsbetiae_contig1272:14081..147651622815460.8667479-CDS-L-elsbetiae_contig1272:14081..14765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 14082..14765 +
1691682908.6998875-CDS-L-elsbetiae_contig1272:14081..147651691682908.6998875-CDS-L-elsbetiae_contig1272:14081..14765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 14082..14765 +
1622815460.8856497-CDS-L-elsbetiae_contig1272:15084..152081622815460.8856497-CDS-L-elsbetiae_contig1272:15084..15208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 15085..15208 +
1691682908.7134063-CDS-L-elsbetiae_contig1272:15084..152081691682908.7134063-CDS-L-elsbetiae_contig1272:15084..15208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 15085..15208 +
1622815460.902644-CDS-L-elsbetiae_contig1272:15568..157771622815460.902644-CDS-L-elsbetiae_contig1272:15568..15777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 15569..15777 +
1691682908.7236552-CDS-L-elsbetiae_contig1272:15568..157771691682908.7236552-CDS-L-elsbetiae_contig1272:15568..15777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1272 15569..15777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1272.2186.1

>prot_L-elsbetiae_contig1272.2186.1 ID=prot_L-elsbetiae_contig1272.2186.1|Name=mRNA_L-elsbetiae_contig1272.2186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
TGPPGVASSVVSPASGTTAPSSDDSAGHGRDRSPSVEVLRDDSAESSDST
SSGDGKTLFLDRDGGGLVASSPKNKRKRTTGWTTPAPLEGQGGGDGGGDC
PQEEESTAGGGGEEVGLSPSDSVSSERSMIWAAAAEMSSEGDSSGEENNG
TGDGERASLAGDGRHEHDGVEAPGPIDSRSAAATGAVGATAGAAGAGAAP
MAGFVEEEQGRTKRIRTDDHVGLQGDSEASPDSRSGDSPTNLSEPEEESS
RRQGGLPRRGEARFAKTAAVCDENNGLSCAAAVEPAAVEPAAFEPTAPRP
EAAVSSPESQRRQRRLSTSMSEEEEEDSSGDTSASGYSP
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mRNA from alignment at L-elsbetiae_contig1272:14082..15778+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1272.2186.1 ID=mRNA_L-elsbetiae_contig1272.2186.1|Name=mRNA_L-elsbetiae_contig1272.2186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1697bp|location=Sequence derived from alignment at L-elsbetiae_contig1272:14082..15778+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGTCCGCCGGGGGTAGCCTCCTCCGTTGTCAGTCCTGCCAGTGGGAC
AACCGCCCCGTCATCGGACGACAGCGCAGGCCACGGGCGGGACCGCAGCC
CAAGCGTGGAAGTCTTGAGGGACGATTCGGCGGAGAGCTCGGACTCCACC
TCGTCCGGCGACGGGAAAACTCTGTTCCTCGATCGCGACGGCGGTGGCTT
GGTGGCGAGCTCGCCGAAAAACAAGCGAAAGAGGACCACCGGTTGGACGA
CGCCCGCACCGCTGGAAGGACAGGGCGGCGGCGACGGTGGCGGCGACTGC
CCACAGGAGGAAGAGAGCACGGCGGGTGGTGGCGGAGAAGAGGTGGGTTT
GTCGCCTTCGGACTCAGTGTCGTCGGAGCGGAGCATGATTTGGGCAGCTG
CCGCGGAAATGTCTAGCGAAGGCGACAGCTCCGGGGAGGAGAACAACGGG
ACCGGTGACGGCGAGCGTGCTTCTCTCGCAGGCGACGGGCGCCACGAGCA
TGATGGGGTCGAGGCCCCGGGACCAATCGATAGCCGAAGTGCTGCAGCTA
CTGGTGCTGTTGGTGCTACTGCTGGTGCTGCTGGTGCTGGTGCTGCGCCG
ATGGCGGGCTTTGTGGAGGAAGAGCAAGGCAGGACCAAGCGCATCCGCAC
GGATGATCACGTTGGGCTGCAGGGAGACTCTGAGGTAGGCGACGAGGTTA
AGGGTTGTGCTGAGGTTAGGGATAGTATCTAGGTGCCAGTTGGGACGTTC
AATGAATATTGCACGCTGTGAGGAAAATGTTTCTCAAATTAGCTGGTATT
ACTGACCCTGTCCGAACGCAGCTTGCAGGTCCCAATGACTTTTTTGGTGG
TACCAAATATAAGTAGATGCGTGACACGGGCGGAAACGCGAAGCTGTTGT
CGAAAGGCTTGAGTCTGTTCTGCTTCGCGCCGTTGCCTTCCCCTCTCCAT
GCCGCGCGTGCTTTCTTTAACCGTCCCACTCCCATCTCCCACCCCCTCAG
CAGGCAAGCCCCGACAGCCGCAGTGGCGACTCGCCCACCAATTTGTCGGA
GCCGGAAGAGGAATCGAGCAGGCGGCAGGGCGGTTTACCTAGAAGAGGCG
AAGCTCGTTTTGCGAAAACTGCGGCAGGTGCGGAATGCGTGGTTGCTCTC
ACAGGAGGTGGTCAAGTTGTCGCCTCTTCCAAATTGATCCCACGTACCAC
GTTGGTAGCTGCGGAGACTGCGTTCAGTATCACTGGCGTTACCATTATTT
TTGTTCTGTTGGTGGAACCACGATGTCCTACCATTTGAAAACCCATAGAA
GGATCCGTTGCTCGTAACATTTGCCGATTGCGCGGCTATGCGTGCTGCAG
TTGACCCCTCTCGGTTGCGCACATATGTAGCGTGTGCTCTCTCTGCGTCC
ATGACGGCTTGCCTGTGGCCTTACCTTTGCTGACTTCAAGGTTGGTCTTT
CACCGCTCCCTGACGCCCTCTCGTGCCGTGAATGTAGTCTGCGACGAAAA
CAACGGCCTATCCTGCGCTGCCGCTGTCGAACCAGCCGCTGTCGAACCGG
CGGCTTTCGAACCAACCGCGCCGCGCCCCGAAGCCGCTGTGAGCTCACCC
GAGTCGCAACGACGACAGCGGCGGCTATCGACGAGCATGAGCGAGGAGGA
GGAGGAGGACAGCAGCGGCGACACGAGTGCTAGCGGCTACTCGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1272:14082..15778+

>mRNA_L-elsbetiae_contig1272.2186.1 ID=mRNA_L-elsbetiae_contig1272.2186.1|Name=mRNA_L-elsbetiae_contig1272.2186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig1272:14082..15778+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGGTCCGCCGGGGGTAGCCTCCTCCGTTGTCAGTCCTGCCAGTGGGAC
AACCGCCCCGTCATCGGACGACAGCGCAGGCCACGGGCGGGACCGCAGCC
CAAGCGTGGAAGTCTTGAGGGACGATTCGGCGGAGAGCTCGGACTCCACC
TCGTCCGGCGACGGGAAAACTCTGTTCCTCGATCGCGACGGCGGTGGCTT
GGTGGCGAGCTCGCCGAAAAACAAGCGAAAGAGGACCACCGGTTGGACGA
CGCCCGCACCGCTGGAAGGACAGGGCGGCGGCGACGGTGGCGGCGACTGC
CCACAGGAGGAAGAGAGCACGGCGGGTGGTGGCGGAGAAGAGGTGGGTTT
GTCGCCTTCGGACTCAGTGTCGTCGGAGCGGAGCATGATTTGGGCAGCTG
CCGCGGAAATGTCTAGCGAAGGCGACAGCTCCGGGGAGGAGAACAACGGG
ACCGGTGACGGCGAGCGTGCTTCTCTCGCAGGCGACGGGCGCCACGAGCA
TGATGGGGTCGAGGCCCCGGGACCAATCGATAGCCGAAGTGCTGCAGCTA
CTGGTGCTGTTGGTGCTACTGCTGGTGCTGCTGGTGCTGGTGCTGCGCCG
ATGGCGGGCTTTGTGGAGGAAGAGCAAGGCAGGACCAAGCGCATCCGCAC
GGATGATCACGTTGGGCTGCAGGGAGACTCTGAGACGGGTCCGCCGGGGG
TAGCCTCCTCCGTTGTCAGTCCTGCCAGTGGGACAACCGCCCCGTCATCG
GACGACAGCGCAGGCCACGGGCGGGACCGCAGCCCAAGCGTGGAAGTCTT
GAGGGACGATTCGGCGGAGAGCTCGGACTCCACCTCGTCCGGCGACGGGA
AAACTCTGTTCCTCGATCGCGACGGCGGTGGCTTGGTGGCGAGCTCGCCG
AAAAACAAGCGAAAGAGGACCACCGGTTGGACGACGCCCGCACCGCTGGA
AGGACAGGGCGGCGGCGACGGTGGCGGCGACTGCCCACAGGAGGAAGAGA
GCACGGCGGGTGGTGGCGGAGAAGAGGTGGGTTTGTCGCCTTCGGACTCA
GTGTCGTCGGAGCGGAGCATGATTTGGGCAGCTGCCGCGGAAATGTCTAG
CGAAGGCGACAGCTCCGGGGAGGAGAACAACGGGACCGGTGACGGCGAGC
GTGCTTCTCTCGCAGGCGACGGGCGCCACGAGCATGATGGGGTCGAGGCC
CCGGGACCAATCGATAGCCGAAGTGCTGCAGCTACTGGTGCTGTTGGTGC
TACTGCTGGTGCTGCTGGTGCTGGTGCTGCGCCGATGGCGGGCTTTGTGG
AGGAAGAGCAAGGCAGGACCAAGCGCATCCGCACGGATGATCACGTTGGG
CTGCAGGGAGACTCTGAGGCAAGCCCCGACAGCCGCAGTGGCGACTCGCC
CACCAATTTGTCGGAGCCGGAAGAGGAATCGAGCAGGCGGCAGGGCGGTT
TACCTAGAAGAGGCGAAGCTCGTTTTGCGAAAACTGCGGCAGGCAAGCCC
CGACAGCCGCAGTGGCGACTCGCCCACCAATTTGTCGGAGCCGGAAGAGG
AATCGAGCAGGCGGCAGGGCGGTTTACCTAGAAGAGGCGAAGCTCGTTTT
GCGAAAACTGCGGCAGTCTGCGACGAAAACAACGGCCTATCCTGCGCTGC
CGCTGTCGAACCAGCCGCTGTCGAACCGGCGGCTTTCGAACCAACCGCGC
CGCGCCCCGAAGCCGCTGTGAGCTCACCCGAGTCGCAACGACGACAGCGG
CGGCTATCGACGAGCATGAGCGAGGAGGAGGAGGAGGACAGCAGCGGCGA
CACGAGTGCTAGCGGCTACTCGCCGTCTGCGACGAAAACAACGGCCTATC
CTGCGCTGCCGCTGTCGAACCAGCCGCTGTCGAACCGGCGGCTTTCGAAC
CAACCGCGCCGCGCCCCGAAGCCGCTGTGAGCTCACCCGAGTCGCAACGA
CGACAGCGGCGGCTATCGACGAGCATGAGCGAGGAGGAGGAGGAGGACAG
CAGCGGCGACACGAGTGCTAGCGGCTACTCGCCG
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