mRNA_L-elsbetiae_contig12718.2180.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12718.2180.1
Unique NamemRNA_L-elsbetiae_contig12718.2180.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A6H5K1C0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1C0_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.670e-124
Identity = 176/191 (92.15%), Postives = 183/191 (95.81%), Query Frame = 3
Query:   96 MGNASSHSYAGAAPPPAADARVILQHDLPKVIYVKRLANGKFIKSYQCRVDGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLP 668
            MGNASSH+Y GAAPPPAADARVILQHDLPKVIYVK+LANGKFIKSYQCRVDG+MVVVKAYIK D  E LAPVEACLS MAKALDTRSCPNVLPYQRWLQS+VRASPH+NAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKG+ HGDIKSENVLVTSGNW+LLTDFAPFKPT LP
Sbjct:    1 MGNASSHAYYGAAPPPAADARVILQHDLPKVIYVKQLANGKFIKSYQCRVDGIMVVVKAYIKRDKREVLAPVEACLSNMAKALDTRSCPNVLPYQRWLQSDVRASPHRNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGIRHGDIKSENVLVTSGNWVLLTDFAPFKPTFLP 191          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A7S2ST98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST98_9STRA)

HSP 1 Score: 177 bits (448), Expect = 9.290e-50
Identity = 96/197 (48.73%), Postives = 126/197 (63.96%), Query Frame = 3
Query:   96 MGNASSHSYAGAAPPPAADARVILQHDLPKVIYVKRLANGKFIKSYQCRVD-GVMVVVKAYIKMDPL--ENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            MGN++ H   G++    +D R  LQ+DLPK I  K++  GKF+K++ C+V+ GV +VVK Y+K D    E L   +  + ++   L+    PNVLPYQ  +    R+     AG   YLLRQH   +L DRLSTRPFL+  EK+W+VY L +A  QCH  GVCHGDIKSENV+VTS  W++LTDFA FKPT LP  D
Sbjct:    1 MGNSAPHVKPGSS-GAVSDPRNYLQYDLPKFIIQKKMGAGKFMKAFLCKVEEGVPMVVKVYVKHDGETDEALLRAKEGVEEIQTRLNPYDHPNVLPYQSSVVGAQRSGRFTGAG---YLLRQHFYTSLYDRLSTRPFLSTVEKKWIVYQLFKALIQCHDSGVCHGDIKSENVMVTSWTWIILTDFASFKPTYLPEDD 193          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A7S3HPT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPT4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.580e-48
Identity = 94/199 (47.24%), Postives = 122/199 (61.31%), Query Frame = 3
Query:   81 HCFFDMGNASSHSYAGAAPPPAADARVILQHDLPKVIYVKRLANGKFIKSYQCRVDGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            H    MGNAS     G       D R+  Q+DLPK I   ++ NGKF+K+Y  RVD   VVVK Y+K++  + L P  A L+ M K L     PN+LPYQ W++S  R +  K A TP YL+RQ+    L DRLSTRPFL + EK W+VY L +    CH  G+ HGDIK ENV+ T+ NW++LTDF+PFKP ++P  D
Sbjct:    8 HLSAKMGNASYRQTTGNQ-FNNQDLRIYFQNDLPKFILQAKVGNGKFMKTYVMRVDSAPVVVKVYMKLNDEDLLVPA-AHLTIMWKTLSPAKYPNLLPYQMWIKSTARFN--KTAATPIYLIRQYFSSNLYDRLSTRPFLNELEKLWIVYQLFKCLEICHEHGIVHGDIKPENVMCTTSNWVILTDFSPFKPAIIPDDD 202          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A482RU35_9ARCH (Protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU35_9ARCH)

HSP 1 Score: 160 bits (404), Expect = 1.930e-45
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 3
Query:   96 MGNASSHSYAGAAPPPAADARVI---LQHDLPKVIYVKRLANGKFIKSYQCRVDGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            MGNA  +     A  P     VI   +Q DLPK +    + NGKF+KSY  RVD   +VVK Y+K+ P E+L      L+ + + +     PN+LPYQ W++S   AS  K   +P YLLRQ+    L DRL +RPFL   E+ W+++ L +    CH  G+ HGDIK ENVL T+ NW++LTDF+PFKP LLP  D
Sbjct:    1 MGNAG-YRQTTLANNPINQQEVITAFMQVDLPKFVKQSMIGNGKFLKSYIMRVDSTQLVVKIYMKL-PDEDLQIATMQLTSVLRTIPPSKYPNLLPYQMWIRS---ASTRKTPASPVYLLRQYFHFNLYDRLFSRPFLNTLERLWILFQLFKCLEICHELGIVHGDIKPENVLCTTSNWVVLTDFSPFKPVLLPDDD 192          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A2D4CEE2_PYTIN (Phosphoinositide 3-kinase regulatory subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEE2_PYTIN)

HSP 1 Score: 167 bits (423), Expect = 7.720e-44
Identity = 82/197 (41.62%), Postives = 121/197 (61.42%), Query Frame = 3
Query:   96 MGNASSHSYAGAAPPPAADARVILQHDLPK---VIYVKRLANGKFIKSYQCRVDGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            MGNA+  +   +    A+  R  L    P+   +++V  + +GKF+KS  C+ D   ++VK Y K DP E+L+  E  L +++ A  T + PN+LPY     ++ + S   N    A+++RQ+    L DR+ +RPFLT  EK+W+ + +LRA  QCH KG+CHGDIK EN++VTS NW+ LTDFAPFKPT +P  D
Sbjct:    1 MGNAAPRAQPPSQVDSASQCRTFLMDYSPRSMNIMFVSLIGDGKFLKSIYCKCDEGSLIVKIYRKFDPNESLSSAEVALRRLSLAFTTENQPNLLPY-----ADYQLSAKFNV---AFMVRQYFASNLYDRICSRPFLTAIEKKWIAFQILRALEQCHSKGICHGDIKQENIMVTSWNWIFLTDFAPFKPTYIPEDD 189          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A7S3R9T1_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R9T1_DUNTE)

HSP 1 Score: 157 bits (397), Expect = 6.930e-42
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  174 DLPKVIYVKRLANGKFIKSYQCRVD-GVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            DLP V+    L  G+F+K+  C  D G +VVVKAY K     +L P +  L+++  +L    CP+V P+Q W+ +           +  YL+RQHL   L+DRLSTRPFLT  +KRW+ + LL A AQ H  G CHGDIK+ENVL+TS +W+ L+D+APFKPT LP  +
Sbjct:   18 DLPNVVLKDTLGRGRFLKTLLCLHDEGGLVVVKAYYKRADSPSLGPYKQQLARLRASLHGLPCPHVWPWQAWVDT----------ASAGYLMRQHLASGLNDRLSTRPFLTHAQKRWIAFQLLHAVAQSHEAGCCHGDIKTENVLLTSWSWVFLSDYAPFKPTFLPADN 176          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A7S1CBY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBY9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.050e-41
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 3
Query:  138 PPAADARVILQHDLPKVIYVKRLANGKFIKSYQCRV-DGVMVVVKAYIKMDPL---------------ENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTP-AYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            P   D R+ L+ +L  ++Y ++L +GK +K+Y+C+   G  VV    I+ D +                 L    A L+++   L     PNVLP QR          H+    P A+L+RQH+  +L +R+STRPFL+D EKRW+ + LLRA AQCHG GV HGD+KSENVLVTS NW+LLTDFAPFKPT LP  D
Sbjct:   10 PLQVDLRLCLE-ELNDLVYREQLGHGKLLKTYRCKGGQGAAVVKVLVIRSDAVGQSTRAAKEFAEEEKRTLELANAQLAELRARLSPLLHPNVLPMQR---------VHRARNHPCAFLVRQHVQWSLYERISTRPFLSDVEKRWITFQLLRALAQCHGAGVVHGDVKSENVLVTSWNWVLLTDFAPFKPTRLPEDD 196          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A482RBG5_9ARCH (Protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RBG5_9ARCH)

HSP 1 Score: 150 bits (380), Expect = 3.600e-41
Identity = 85/213 (39.91%), Postives = 114/213 (53.52%), Query Frame = 3
Query:  129 AAPPPAADARVILQHDLPKVIYVKRLANGKFIKSYQCRVD----------------------------GVMVVVKAYIKMDPLEN-----LAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLP 668
            +A   +AD   +LQ++   ++  ++L  GKF+KSY C+ D                              + V K YIK +   N     +      L ++ +A   +  PN+LPYQRW       SP   A   AYL RQHL  +L +R  TRPFLT +EK WL+Y LLRA AQCH +G+ HGDIKSENV+VT+  WL+LTDFA FKPT +P
Sbjct:    7 SATEKSADGHFLLQNEWSAIVTKRQLGKGKFLKSYACQRDPRGHGKVGAGAAGSATAAEDDAAAARSSDSLFVCKVYIKREERGNDTQRRIGVAREQLGQLGRAFTLQRQPNLLPYQRW-----EGSPKMGA---AYLFRQHLAHSLYERCHTRPFLTRSEKMWLIYQLLRALAQCHARGIAHGDIKSENVMVTAWGWLMLTDFALFKPTFIP 211          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: H3GYM4_PHYRM (Non-specific serine/threonine protein kinase n=16 Tax=Phytophthora TaxID=4783 RepID=H3GYM4_PHYRM)

HSP 1 Score: 159 bits (403), Expect = 3.900e-41
Identity = 82/197 (41.62%), Postives = 114/197 (57.87%), Query Frame = 3
Query:   96 MGNASSHSYAGAAPPPAADARVILQHDLPK---VIYVKRLANGKFIKSYQCRVDGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            MGNA+  +   +A   A+  R  L    P+   +++   + +GKF+KS  C+ D   +VVK Y K D  E+L   E  L ++A A      PNV+PY  +  SN            A+++RQ+    L DR+ +RPFLT  EK+W+ + +LRA  Q H KG+CHGDIK ENV+VTS NW+ LTDFAPFKPT +P  D
Sbjct:    1 MGNAAPRAQPQSALDSASQYRTFLMDYTPRSMDMMFGSLIGDGKFLKSISCKCDEGHLVVKIYRKYDERESLTSAEVALRRLALAFSVEQQPNVIPYADFQLSNKY--------NVAFMVRQYFASNLYDRICSRPFLTTVEKKWIAFQILRALEQSHAKGICHGDIKQENVMVTSWNWVFLTDFAPFKPTYIPEDD 189          
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Match: A0A178UYI0_ARATH (VPS15 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178UYI0_ARATH)

HSP 1 Score: 147 bits (371), Expect = 1.080e-40
Identity = 78/172 (45.35%), Postives = 101/172 (58.72%), Query Frame = 3
Query:  171 HDLPK---VIYVKRLANGKFIKSYQCRVDGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQSNVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRAAAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRD 677
            HDLP    ++  + L  G+F+KS QC+ D  +VVVK Y K     +L   E  L K+     +   P+V P+Q W +++            AYL+RQ+    L DRLSTRPFL+  EK+WL + LL A  QCH K +CHGDIK ENVL+TS NWL L DFA FKPT +P  D
Sbjct:   19 HDLPSSYNLVLKEVLGRGRFLKSIQCKHDEGLVVVKVYFKRGDSIDLREYERRLVKIKDVFLSLEHPHVWPFQFWQETD----------KAAYLVRQYFYSNLHDRLSTRPFLSLVEKKWLAFQLLLAVKQCHEKDICHGDIKCENVLLTSWNWLYLADFASFKPTYIPYDD 180          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12718.2180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1C0_9PHAE1.670e-12492.15Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2ST98_9STRA9.290e-5048.73Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3HPT4_9STRA1.580e-4847.24Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482RU35_9ARCH1.930e-4544.16Protein kinase domain-containing protein (Fragment... [more]
A0A2D4CEE2_PYTIN7.720e-4441.62Phosphoinositide 3-kinase regulatory subunit n=1 T... [more]
A0A7S3R9T1_DUNTE6.930e-4246.15Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
A0A7S1CBY9_9STRA3.050e-4144.16Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482RBG5_9ARCH3.600e-4139.91Protein kinase domain-containing protein (Fragment... [more]
H3GYM4_PHYRM3.900e-4141.62Non-specific serine/threonine protein kinase n=16 ... [more]
A0A178UYI0_ARATH1.080e-4045.35VPS15 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12718contigL-elsbetiae_contig12718:230..2721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue2.9e-36
Seed eggNOG ortholog164328.Phyra82813
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3QCEB@4776,KOG1240@1,KOG1240@2759
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-08_002020.1
EC2.7.11.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Exons3
Model size704
Cds size609
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12718.2180.1prot_L-elsbetiae_contig12718.2180.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12718 230..2626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815460.4682648-CDS-L-elsbetiae_contig12718:229..5351622815460.4682648-CDS-L-elsbetiae_contig12718:229..535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12718 230..535 -
1691682908.5235927-CDS-L-elsbetiae_contig12718:229..5351691682908.5235927-CDS-L-elsbetiae_contig12718:229..535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12718 230..535 -
1622815460.48476-CDS-L-elsbetiae_contig12718:1480..16431622815460.48476-CDS-L-elsbetiae_contig12718:1480..1643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12718 1481..1643 -
1691682908.5361009-CDS-L-elsbetiae_contig12718:1480..16431691682908.5361009-CDS-L-elsbetiae_contig12718:1480..1643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12718 1481..1643 -
1622815460.5048652-CDS-L-elsbetiae_contig12718:2486..26261622815460.5048652-CDS-L-elsbetiae_contig12718:2486..2626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12718 2487..2626 -
1691682908.5497532-CDS-L-elsbetiae_contig12718:2486..26261691682908.5497532-CDS-L-elsbetiae_contig12718:2486..2626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12718 2487..2626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815460.517354-UTR-L-elsbetiae_contig12718:2626..27211622815460.517354-UTR-L-elsbetiae_contig12718:2626..2721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12718 2627..2721 -
1691682908.5593362-UTR-L-elsbetiae_contig12718:2626..27211691682908.5593362-UTR-L-elsbetiae_contig12718:2626..2721Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12718 2627..2721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12718.2180.1

>prot_L-elsbetiae_contig12718.2180.1 ID=prot_L-elsbetiae_contig12718.2180.1|Name=mRNA_L-elsbetiae_contig12718.2180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MGNASSHSYAGAAPPPAADARVILQHDLPKVIYVKRLANGKFIKSYQCRV
DGVMVVVKAYIKMDPLENLAPVEACLSKMAKALDTRSCPNVLPYQRWLQS
NVRASPHKNAGTPAYLLRQHLLGTLSDRLSTRPFLTDTEKRWLVYLLLRA
AAQCHGKGVCHGDIKSENVLVTSGNWLLLTDFAPFKPTLLPVRDFLSCFT
GFC
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mRNA from alignment at L-elsbetiae_contig12718:230..2721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12718.2180.1 ID=mRNA_L-elsbetiae_contig12718.2180.1|Name=mRNA_L-elsbetiae_contig12718.2180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2492bp|location=Sequence derived from alignment at L-elsbetiae_contig12718:230..2721- (Laminarionema elsbetiae ELsaHSoW15)
GTACACACGCGCTGGCGCAATGATAGCCATACCGATGATTCGCTAGATCG TGATACAAGCATTCGCAACACATCCCAGCACACTGTTTTTTCGATATGGG GAATGCCTCGTCCCACTCGTACGCCGGCGCCGCCCCGCCGCCAGCAGCGG ACGCACGCGTGATACTTCAGCACGACCTGCCCAAGGTGATCTATGTCAAG AGGCTGGCAAACGGCAAGTTCATCAAGAGCTACCAGTGAGTGCAAGTTCA GGAAGTCTCTTTGAACTGGGAGGCTCTGTAAATATTGTATCGAAGTCTAT GTTTGGGTCTATCTACAATACACAGTTGATGTCAGCGGAGGCATTGAACA AGGAAGTTCCCCGAACGTTGTTTGCTTCGGCTGTCTGCTTCGTGCCGTGC GTTACCAAAGAACACGCCCTCTCATCTCCTCGTGGGTCCATCGACGAGCT TTGGTCGGAGCAAGTCGGCCAAGTGGCCTCGGACCTTGAGCACGTACGAT TGTGTGCTGCTAGAACATATCTCGACCAACGTCAACTATACTCCATATCA TACGGTCGTTCCCCCGTCCGTGTGTTACGTAAGACACCAGCCATGTGGTT AAGCAGCAACCGAGTAGATAATATAGTTGTAGTTGGAAGGTAGTAGGATG ATCGTCGCTGCTGAAGTAGCACCAAATCCGTAGCCTTTGGAACAATACAT AGTTGCGCGATGGAGAGAAAAGAGAGCCAGTGCGCGAGTCTCGCCGCCTT TCCCAGGCCAGTGCCCCACAACACTGCAGCTACATGTTTCCGGTGGAGGT CTATGGTACATTCTTGGTCCTATGGTTTTGTGCGTGTAGCAACGGTGTGG GCATCTACGACACATGTCCTATTCTGTAGTCGTGGGAAAGTGTTTACCAC ATCGTCTCCCCGTCTTACGTACCAAAAAAACTCGACCGGTCTGATTCAGA TTATGTGCGAATGTAGCTCGCATCTGCCGATTCACAGCTGCTGTGTTGCT TTGTCCTGTATATTTCAGCATCGCTGTCTGTCTGATTCCCCCCCCTCTCT CTTGCTCTCTTTTCTCTCTCTATTTCAGGTGCAGAGTAGACGGAGTTATG GTGGTGGTGAAGGCGTACATCAAGATGGACCCGCTCGAGAACTTGGCTCC TGTCGAGGCTTGCTTGTCCAAGATGGCCAAGGCTCTCGACACGCGCAGCT GCCCGAACGTGCTGCCTTACCAACGGTGGCTGCAGTCTAACGTGAGCCTC TCGCTGCCGAGCAGAACGGTAGTCTACGCAGGTTTTTGGTCGGCGAAACA TATGGGATAAAGCATGGAATCGGGGAATGTTTGGGAGGTCGGTGGTTAGG GTTAGGGTTAGGGTTAGGGTTACGGAACCCCTCCTACTCTATTTCACTTA TAAACCAATATTCCCCGTTTTTTCTCGCGAAGGCAGTCCAAACAGAAGGA GCACCGACGAAAAAGAACAGGGGTGCAACACAGCAAGGCAATCAGGAATA CAGCAAGCAATCTGTGCAGGACACGTGCCACCAAAATGAATCGAGCCCTA TATGTCGCAAAACAGCAGCAGGGATATAGGCAATCAGGAATACAGCAAGC AATCTGTGCAGGACACGTGCCACCAAAATGAATCGAGCCCTCCATGTCGC AAAACAGCAGCAGGGATATATGTATTTGAGCATTATCGGTCTGGGTGTTG GTGAGCTCTTTGCAGAGGCAATATGCAGTACACAACAGTCAGTGTTGTGC CGCATTTACAAGCAAGATAGGCCGAACGAAACGGCTGTTGCGAGCAGAAG CCCCCCCCCCCCCCCTGCGAAAACGCGGGGGCGGGCGCTTGTTCGCCGGC ACACGACCGGCCCAGAGCTGTGTCGGAGACAAACACCCCTCAACCGCTGC CCCCCCTTGCACACCGCGCGATGATCTGCCAAGTTGCACTCACGAGGACC ATCGCACGGGTAGTTAGCCAGCCGCCCACATCACGGCAAACCGTGGTACA TACACACGTATGGCACCACCACATACGATGCAGGCGCAAGCACAAGCCAC CAAGCGAGCGAGACGGGAAAGCCTCGACCAACCCCGGCCCCCGAGCTTGC CTTTGGGCCACCAGCCTTGTGTCACACAAGCGAAATCGAATCCTCCTCTA ATTCCCCCATTTCCCCCCCTTTTCGCCCCATGCCAGGTCCGCGCGAGCCC GCACAAGAACGCCGGCACCCCGGCGTACCTCCTGCGGCAGCACCTGCTGG GCACCCTCAGCGACCGGCTGTCCACCCGGCCCTTCCTCACCGACACCGAG AAGCGGTGGCTGGTGTACCTGCTGCTGAGGGCGGCGGCGCAGTGCCACGG CAAGGGGGTGTGCCACGGCGACATCAAGAGCGAGAACGTGCTGGTGACGA GCGGGAACTGGCTGCTGCTGACGGACTTCGCTCCGTTCAAGCCCACCTTG TTGCCGGTGAGGGATTTTTTATCTTGCTTCACAGGGTTTTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12718:230..2721-

>mRNA_L-elsbetiae_contig12718.2180.1 ID=mRNA_L-elsbetiae_contig12718.2180.1|Name=mRNA_L-elsbetiae_contig12718.2180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig12718:230..2721- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAATGCCTCGTCCCACTCGTACGCCGGCGCCGCCCCGCCGCCAGC
AGCGGACGCACGCGTGATACTTCAGCACGACCTGCCCAAGGTGATCTATG
TCAAGAGGCTGGCAAACGGCAAGTTCATCAAGAGCTACCAATGGGGAATG
CCTCGTCCCACTCGTACGCCGGCGCCGCCCCGCCGCCAGCAGCGGACGCA
CGCGTGATACTTCAGCACGACCTGCCCAAGGTGATCTATGTCAAGAGGCT
GGCAAACGGCAAGTTCATCAAGAGCTACCAGTGCAGAGTAGACGGAGTTA
TGGTGGTGGTGAAGGCGTACATCAAGATGGACCCGCTCGAGAACTTGGCT
CCTGTCGAGGCTTGCTTGTCCAAGATGGCCAAGGCTCTCGACACGCGCAG
CTGCCCGAACGTGCTGCCTTACCAACGGTGGCTGCAGTCTAACGTGCAGA
GTAGACGGAGTTATGGTGGTGGTGAAGGCGTACATCAAGATGGACCCGCT
CGAGAACTTGGCTCCTGTCGAGGCTTGCTTGTCCAAGATGGCCAAGGCTC
TCGACACGCGCAGCTGCCCGAACGTGCTGCCTTACCAACGGTGGCTGCAG
TCTAACGTCCGCGCGAGCCCGCACAAGAACGCCGGCACCCCGGCGTACCT
CCTGCGGCAGCACCTGCTGGGCACCCTCAGCGACCGGCTGTCCACCCGGC
CCTTCCTCACCGACACCGAGAAGCGGTGGCTGGTGTACCTGCTGCTGAGG
GCGGCGGCGCAGTGCCACGGCAAGGGGGTGTGCCACGGCGACATCAAGAG
CGAGAACGTGCTGGTGACGAGCGGGAACTGGCTGCTGCTGACGGACTTCG
CTCCGTTCAAGCCCACCTTGTTGCCGGTGAGGGATTTTTTATCTTGCTTC
ACAGGGTTTTGTGTCCGCGCGAGCCCGCACAAGAACGCCGGCACCCCGGC
GTACCTCCTGCGGCAGCACCTGCTGGGCACCCTCAGCGACCGGCTGTCCA
CCCGGCCCTTCCTCACCGACACCGAGAAGCGGTGGCTGGTGTACCTGCTG
CTGAGGGCGGCGGCGCAGTGCCACGGCAAGGGGGTGTGCCACGGCGACAT
CAAGAGCGAGAACGTGCTGGTGACGAGCGGGAACTGGCTGCTGCTGACGG
ACTTCGCTCCGTTCAAGCCCACCTTGTTGCCGGTGAGGGATTTTTTATCT
TGCTTCACAGGGTTTTGT
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