mRNA_L-elsbetiae_contig12712.2179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12712.2179.1
Unique NamemRNA_L-elsbetiae_contig12712.2179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12712.2179.1 vs. uniprot
Match: A0A6H5KE51_9PHAE (Protein kinase domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KE51_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.420e-46
Identity = 211/438 (48.17%), Postives = 233/438 (53.20%), Query Frame = 1 
Query:    1 QTAETLCRGLPALAEYLTYVRGLRPGEPADYSRAELIFTDGLRRRGFSAAVPFDWMKKQTQA---PHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPRADS---VDGSGFANGRSIRSGSGXXXXXXXXXXXXXXXXXXXXFDLYADIPXXXXXXXPTAATARSETGERK-SGAEDC---------GGGRAEAGAKLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDRGVRDRRGGTG-SPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVDVAAALGKLRPHLRGXXXXXXXXXXRTGSKKFPRACGLLTDLLCAKLGPDNEELFYDVVFEAVTSPCDDGXXXXXXXXXXXQRRALRRLDGLEGGALRRLVEAAGCRSSVFSGRRRETVEAWAREAA 1263
            +TAETLCRGLPALAEYLTYVRGL PGEP DYSRAELIFTDGLRRRGFSA VPFDWMK Q QA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    KRPR+ S   + GS    GR +   +                     FDLYAD+P        +  T     G    SGAED          G G A                                          G     G  G SPA                              VDV+ ALGKLRPHL+G          RTGS+KFPRACGLLTDLLCAKLG +NEE+F+ V+ + V      G           +  AL + + + G A+RRLV AA  RSS FSG+RRE VE+WA E A
Sbjct:  530 ETAETLCRGLPALAEYLTYVRGLEPGEPPDYSRAELIFTDGLRRRGFSADVPFDWMK-QNQAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGAKKRPRSGSGSLLSGSAAGGGRGLMPAAAM-------------------FDLYADVPPPEENPPASVETRHEGKGVADVSGAEDVKLSYPNASPGKGSAATLLAASTEDRGDPVSAPVDMKKVAVRPELALETSAGQMAGGGPATEVGAVGTSPAGRGAKGA----------------------TVDVSLALGKLRPHLQGS---------RTGSRKFPRACGLLTDLLCAKLGQENEEIFFGVISDTVAYR---GGCGENRDVSAGEHLALLKGNDVAGEAIRRLVTAASSRSSCFSGQRREAVESWAEEIA 913
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12712.2179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KE51_9PHAE2.420e-4648.17Protein kinase domain-containing protein n=3 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12712contigL-elsbetiae_contig12712:3299..4786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue2e-47
Seed eggNOG ortholog2880.D7FVL2
KEGG koko:K08959
KEGG Pathwayko04340,ko04390,ko04540,ko04710,map04340,map04390,map04540,map04710
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsKOG1164@1,KOG1164@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Exons3
Model size1275
Cds size1275
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12712.2179.1prot_L-elsbetiae_contig12712.2179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12712 3299..4786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815460.3978271-CDS-L-elsbetiae_contig12712:3298..34681622815460.3978271-CDS-L-elsbetiae_contig12712:3298..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12712 3299..3468 -
1691682908.4938996-CDS-L-elsbetiae_contig12712:3298..34681691682908.4938996-CDS-L-elsbetiae_contig12712:3298..3468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12712 3299..3468 -
1622815460.412168-CDS-L-elsbetiae_contig12712:3609..44341622815460.412168-CDS-L-elsbetiae_contig12712:3609..4434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12712 3610..4434 -
1691682908.506726-CDS-L-elsbetiae_contig12712:3609..44341691682908.506726-CDS-L-elsbetiae_contig12712:3609..4434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12712 3610..4434 -
1622815460.4243827-CDS-L-elsbetiae_contig12712:4506..47861622815460.4243827-CDS-L-elsbetiae_contig12712:4506..4786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12712 4507..4786 -
1691682908.5147088-CDS-L-elsbetiae_contig12712:4506..47861691682908.5147088-CDS-L-elsbetiae_contig12712:4506..4786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12712 4507..4786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12712.2179.1

>prot_L-elsbetiae_contig12712.2179.1 ID=prot_L-elsbetiae_contig12712.2179.1|Name=mRNA_L-elsbetiae_contig12712.2179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=425bp
QTAETLCRGLPALAEYLTYVRGLRPGEPADYSRAELIFTDGLRRRGFSAA
VPFDWMKKQTQAPHHHHSSNPLKAAGVAAAGAAAAAAAPAAGASAGAGAG
GASGGSPKAATAGGSAAAAAAAAKKRPRADSVDGSGFANGRSIRSGSGGG
GGGGGSRGFMPAAAAAAVFDLYADIPPPEEEMSPTAATARSETGERKSGA
EDCGGGRAEAGAKLPPLGAAAVAAAAAAAAAGGTSALPAAKRRAAATGDR
GVRDRRGGTGSPAGSAAAAGAAERNDKAGAGTAAAVGGGKGGAVDVAAAL
GKLRPHLRGGGGGGGGGGGRTGSKKFPRACGLLTDLLCAKLGPDNEELFY
DVVFEAVTSPCDDGGGGGEAEAGGGQRRALRRLDGLEGGALRRLVEAAGC
RSSVFSGRRRETVEAWAREAADGC*
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mRNA from alignment at L-elsbetiae_contig12712:3299..4786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12712.2179.1 ID=mRNA_L-elsbetiae_contig12712.2179.1|Name=mRNA_L-elsbetiae_contig12712.2179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig12712:3299..4786- (Laminarionema elsbetiae ELsaHSoW15)
CAGACCGCGGAAACCCTGTGCAGGGGGCTCCCCGCCCTGGCGGAGTACCT
GACGTACGTGAGAGGGCTGCGGCCGGGGGAGCCGGCGGACTACTCGCGCG
CCGAGCTCATCTTCACGGACGGCCTTCGGCGCCGGGGCTTCTCCGCCGCC
GTCCCCTTCGACTGGATGAAGAAGCAGACGCAGGCTCCTCACCACCACCA
CAGCAGCAACCCCCTTAAGGCGGCGGGGGTGGCAGCAGCGGGGGCCGCGG
CGGCGGCGGCTGCTCCGGCGGCCGGCGCGAGTAGCCGCGGCGTAGTCGTT
CACCGCGGGCTCGCTGTTGCGGGAGGGGCAGCGGGTGCCCGTGCCGGTGC
AGGTGCCGGTGCAGGTGCGGGCGGTGCGAGCGGCGGTAGTCCCAAAGCCG
CCACCGCCGGCGGTTCTGCGGCGGCGGCGGCGGCGGCTGCGAAGAAACGG
CCCCGGGCTGATTCCGTTGACGGATCGGGGTTCGCGAACGGGAGGAGCAT
ACGAAGCGGCAGCGGCGGCGGTGGCGGCGGCGGCGGCAGCAGGGGGTTCA
TGCCCGCTGCTGCTGCGGCGGCCGTGTTCGACCTGTACGCCGACATACCG
CCGCCGGAAGAGGAAATGTCCCCCACCGCCGCCACCGCGAGGAGCGAAAC
GGGCGAGAGAAAATCCGGGGCGGAGGATTGCGGGGGAGGAAGGGCAGAAG
CGGGCGCGAAGCTGCCGCCACTGGGTGCAGCGGCGGTGGCGGCAGCAGCA
GCAGCAGCAGCAGCGGGAGGCACATCAGCTCTTCCGGCGGCGAAACGGCG
GGCCGCAGCAACGGGGGACCGGGGAGTCCGAGACCGGAGGGGTGGTACTG
GTTCGCCTGCGGGCAGCGCAGCGGCGGCGGGCGCGGCCGAGAGGAACGAT
AAGGCCGGGGCTGGGACGGCGGCCGCCGTGGGTGGCGGGAAAGGGGGCGC
GGTGGACGTAGCGGCCGCCCTCGGCAAGCTCCGGCCTCACCTGAGAGGCG
GCGGCGGCGGCGGCGGCGGCGGTGGCGGCCGCACTGGCAGCAAGAAGTTT
CCGCGAGCGTGCGGCCTCCTGACGGACCTTCTGTGCGCCAAGCTTGGGCC
GGACAACGAGGAGCTGTTCTATGACGTCGTCTTTGAGGCGGTGACATCAC
CATGCGACGACGGCGGCGGCGGCGGGGGTGGCGGCGGCGGAGGGGCGGGC
GCCGGTGGTTCTGGTGGCAACGGCAGTGGGGCGGCGGTGGCAAGCTGCGA
CGGCAGCTCTCACGTAGGTGGTTCTAGTAGCAACGGCGGTGCGGCGGCAG
AGGCAGAAGCAGAGGCAGAGGCAGAGGCAGGGGGAGGGCAAAGAAGAGCG
CTCCGGCGTCTGGATGGCCTTGAAGGGGGGGCTCTGCGGCGCCTGGTGGA
AGCTGCGGGCTGCCGTTCCTCGGTTTTCTCCGGGCGGCGGCGAGAGACCG
TAGAGGCCTGGGCTAGAGAGGCGGCGGACGGGTGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12712:3299..4786-

>mRNA_L-elsbetiae_contig12712.2179.1 ID=mRNA_L-elsbetiae_contig12712.2179.1|Name=mRNA_L-elsbetiae_contig12712.2179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2550bp|location=Sequence derived from alignment at L-elsbetiae_contig12712:3299..4786- (Laminarionema elsbetiae ELsaHSoW15)
CAGACCGCGGAAACCCTGTGCAGGGGGCTCCCCGCCCTGGCGGAGTACCT
GACGTACGTGAGAGGGCTGCGGCCGGGGGAGCCGGCGGACTACTCGCGCG
CCGAGCTCATCTTCACGGACGGCCTTCGGCGCCGGGGCTTCTCCGCCGCC
GTCCCCTTCGACTGGATGAAGAAGCAGACGCAGGCTCCTCACCACCACCA
CAGCAGCAACCCCCTTAAGGCGGCGGGGGTGGCAGCAGCGGGGGCCGCGG
CGGCGGCGGCTGCTCCGGCGGCCGGCGCGACAGACCGCGGAAACCCTGTG
CAGGGGGCTCCCCGCCCTGGCGGAGTACCTGACGTACGTGAGAGGGCTGC
GGCCGGGGGAGCCGGCGGACTACTCGCGCGCCGAGCTCATCTTCACGGAC
GGCCTTCGGCGCCGGGGCTTCTCCGCCGCCGTCCCCTTCGACTGGATGAA
GAAGCAGACGCAGGCTCCTCACCACCACCACAGCAGCAACCCCCTTAAGG
CGGCGGGGGTGGCAGCAGCGGGGGCCGCGGCGGCGGCGGCTGCTCCGGCG
GCCGGCGCGAGTGCCGGTGCAGGTGCGGGCGGTGCGAGCGGCGGTAGTCC
CAAAGCCGCCACCGCCGGCGGTTCTGCGGCGGCGGCGGCGGCGGCTGCGA
AGAAACGGCCCCGGGCTGATTCCGTTGACGGATCGGGGTTCGCGAACGGG
AGGAGCATACGAAGCGGCAGCGGCGGCGGTGGCGGCGGCGGCGGCAGCAG
GGGGTTCATGCCCGCTGCTGCTGCGGCGGCCGTGTTCGACCTGTACGCCG
ACATACCGCCGCCGGAAGAGGAAATGTCCCCCACCGCCGCCACCGCGAGG
AGCGAAACGGGCGAGAGAAAATCCGGGGCGGAGGATTGCGGGGGAGGAAG
GGCAGAAGCGGGCGCGAAGCTGCCGCCACTGGGTGCAGCGGCGGTGGCGG
CAGCAGCAGCAGCAGCAGCAGCGGGAGGCACATCAGCTCTTCCGGCGGCG
AAACGGCGGGCCGCAGCAACGGGGGACCGGGGAGTCCGAGACCGGAGGGG
TGGTACTGGTTCGCCTGCGGGCAGCGCAGCGGCGGCGGGCGCGGCCGAGA
GGAACGATAAGGCCGGGGCTGGGACGGCGGCCGCCGTGGGTGGCGGGAAA
GGGGGCGCGGTGGACGTAGCGGCCGCCCTCGGCAAGCTCCGGCCTCACCT
GAGAGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCCGCACTGGCAGCA
AGAAGTTTCCGCGAGCGTGCGGCCTCCTGACGGACCTTCTGTGCGCCAAG
CTTGGGCCGGACAACGAGGAGCTGTTCTATGACGTCGTCTTTGAGGCGGT
GACATCACCATGCGACGACGGCGGCGGCGGCGGGGGTGCCGGTGCAGGTG
CGGGCGGTGCGAGCGGCGGTAGTCCCAAAGCCGCCACCGCCGGCGGTTCT
GCGGCGGCGGCGGCGGCGGCTGCGAAGAAACGGCCCCGGGCTGATTCCGT
TGACGGATCGGGGTTCGCGAACGGGAGGAGCATACGAAGCGGCAGCGGCG
GCGGTGGCGGCGGCGGCGGCAGCAGGGGGTTCATGCCCGCTGCTGCTGCG
GCGGCCGTGTTCGACCTGTACGCCGACATACCGCCGCCGGAAGAGGAAAT
GTCCCCCACCGCCGCCACCGCGAGGAGCGAAACGGGCGAGAGAAAATCCG
GGGCGGAGGATTGCGGGGGAGGAAGGGCAGAAGCGGGCGCGAAGCTGCCG
CCACTGGGTGCAGCGGCGGTGGCGGCAGCAGCAGCAGCAGCAGCAGCGGG
AGGCACATCAGCTCTTCCGGCGGCGAAACGGCGGGCCGCAGCAACGGGGG
ACCGGGGAGTCCGAGACCGGAGGGGTGGTACTGGTTCGCCTGCGGGCAGC
GCAGCGGCGGCGGGCGCGGCCGAGAGGAACGATAAGGCCGGGGCTGGGAC
GGCGGCCGCCGTGGGTGGCGGGAAAGGGGGCGCGGTGGACGTAGCGGCCG
CCCTCGGCAAGCTCCGGCCTCACCTGAGAGGCGGCGGCGGCGGCGGCGGC
GGCGGTGGCGGCCGCACTGGCAGCAAGAAGTTTCCGCGAGCGTGCGGCCT
CCTGACGGACCTTCTGTGCGCCAAGCTTGGGCCGGACAACGAGGAGCTGT
TCTATGACGTCGTCTTTGAGGCGGTGACATCACCATGCGACGACGGCGGC
GGCGGCGGGGAGGCAGAGGCAGGGGGAGGGCAAAGAAGAGCGCTCCGGCG
TCTGGATGGCCTTGAAGGGGGGGCTCTGCGGCGCCTGGTGGAAGCTGCGG
GCTGCCGTTCCTCGGTTTTCTCCGGGCGGCGGCGAGAGACCGTAGAGGCC
TGGGCTAGAGAGGCGGCGGACGGGTGTTGAAGGCAGAGGCAGGGGGAGGG
CAAAGAAGAGCGCTCCGGCGTCTGGATGGCCTTGAAGGGGGGGCTCTGCG
GCGCCTGGTGGAAGCTGCGGGCTGCCGTTCCTCGGTTTTCTCCGGGCGGC
GGCGAGAGACCGTAGAGGCCTGGGCTAGAGAGGCGGCGGACGGGTGTTGA
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