mRNA_L-elsbetiae_contig12704.2173.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12704.2173.1
Unique NamemRNA_L-elsbetiae_contig12704.2173.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 550 bits (1418), Expect = 8.670e-172
Identity = 393/645 (60.93%), Postives = 421/645 (65.27%), Query Frame = 1 
Query:    1 MERLPVILFTTCRCYRELAFPMIGTPAKPQQSTVPTAATAAAAGATATGGNSSGACKGEFDPLVETVKAARSSSSIITTLLTFPHPAQPSAPLPHHSHHTAEGETGVGAGGGICASATHGCLTLSARASMAMDMASSTAFGQAVREALVRSPSRELRVNARSMLASLSRIDHEIAAEVEAYERQGEGQGGERGGFISQTTVMAQLLISLVPYCRGEPDGARCRELFELLSDFLSKGSVDAYSLCAALPALHPPSPPXAXXXXAD-TDGPHATGNNGXXXXXX-----------------HAD-----LDGPLPGPAPPAERELTSTAVAALSAAVAADGVPALAHVVPLLVWLMRLILEPRMTPADGYLSGLLGLARIIIGWLGPHGKGGXXXXXXXXXXXXXXXXXXXXXXXGTRG--LLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCL-----------------------------------------------GGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQ 1719
            MERLPVILFTTCRCYRELA P  G  +          A AAA    AT      A KG+FDPL ETV+AARS S+IIT LLT P                                A   CLTLSARA MAM M SSTAFG+A REALVRSPSRELR NA  ++A+L+ ID E+A E  AYE    G       F+S TTVMAQLLISLVPY R EPDGARCREL++LLSDFLSKG VDA +LCA LPAL P    X XXXX      PHA+G N XXXXXX                 H D     +DGPLP PAP  ERE  STAVAALS AVAADGVPALA VVPLLVWLMRLI++PR+T AD +LSGLLGLARI+IGWLGP GK                         GTRG  LLHHVYH+CLFDIATH+NHGP APPKCRSEGCRANAFGLLTDLAT+CR NVAVLI+LLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                  G +ERVSW+YAPRQTDKA+CGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGE  VPREENLLYQLQ
Sbjct: 2190 MERLPVILFTTCRCYRELAAPAAGATSGTSSMRPRHPAAAAATTTIAT------ASKGDFDPLEETVRAARSCSAIITNLLTLPRXXXXXXXXXXXXXXXXXXXXXXXX---XXXXAVQECLTLSARAGMAMTMVSSTAFGEAAREALVRSPSRELRENAMGVMAALAGIDREVAGEAGAYEG---GXXXXXXEFVSLTTVMAQLLISLVPYGRNEPDGARCRELYQLLSDFLSKGDVDARALCATLPALRPXXXXXXXXXXGSGLPSPHASGENAXXXXXXXXXXXXXXXXXXXXXXXHVDTSFYSIDGPLPAPAPADEREFASTAVAALSEAVAADGVPALAQVVPLLVWLMRLIVKPRVTAADAHLSGLLGLARIVIGWLGPRGK------EAVGLRGLEGICAAEEGVVGTRGMGLLHHVYHECLFDIATHDNHGPLAPPKCRSEGCRANAFGLLTDLATDCRANVAVLIDLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCVERVSWAYAPRQTDKAECGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEGVVPREENLLYQLQ 2816
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 543 bits (1400), Expect = 3.050e-169
Identity = 369/603 (61.19%), Postives = 399/603 (66.17%), Query Frame = 1 
Query:    1 MERLPVILFTTCRCYRELAFPMIGTPAKPQQSTVPTAATAAAAGATATGGNSSGACKGEFDPLVETVKAARSSSSIITTLLTFPHPAQPSAPLPHHSHHTAEGETGVGAGGGICASATHGCLTLSARASMAMDMASSTAFGQAVREALVRSPSRELRVNARSMLASLSRIDHEIAAEVEAYERQGEGQGGERGGFISQTTVMAQLLISLVPYCRGEPDGARCRELFELLSDFLSKGSVDAYSLCAALPALHPPSPPXAXXXXADTDGPHATGNNGXXXXXX---------------HAD-----LDGPLPGPAPPAERELTSTAVAALSAAVAADGVPALAHVVPLLVWLMRLILEPRMTPADGYLSGLLGLARIIIGWLGPHGKGGXXXXXXXXXXXXXXXXXXXXXXXGTRG--LLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGG--IERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYL 1737
            MERLPVILFTTCRCYRELA P  G  A                             KG+FDPLVETV+AARS S+IIT LLT P P                              A   CLTLSARA MAM M SSTAFG+AVREALVR+PSRELR NA  ++A+L+ ID E+A    AYE            F+SQTTVMAQLLISLVPY R EPDGA+CREL++LLSDFLSKG+VDA +LCA LPAL P    X XXXX             XXXXXX               H D     +DGPLP PA   ERE  STAVAALS AVAADGVPALA VVPLLVWLMRLI++PR T AD +LSGLLGLARI+IGWLGP GK                         GTRG  LLHHVYH+CLFDIATH+NHGP APPKCRSEGCRANAFGLLTDLAT+CR NVAVLI+LLLRHXXXXXXXXXXXXXXXXXXX                GG   +ERVSW+YAPRQTDKA+CGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGE  VPREENLLYQLQ +  +L
Sbjct:  957 MERLPVILFTTCRCYRELAAPAAG--ATSXXXXXXXXXXXXXXXXXXXXXXXXXXSKGDFDPLVETVRAARSCSAIITNLLTLPRPXXXXXXXXXXXXXXXXXXXXXXX---XXXXAVQECLTLSARAGMAMTMVSSTAFGEAVREALVRTPSRELRENAMGVMAALAGIDREVAGGAGAYEGXX-XXXXXXXEFVSQTTVMAQLLISLVPYGRNEPDGAKCRELYQLLSDFLSKGNVDACALCATLPALRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVDTSFYRIDGPLPAPASADERESASTAVAALSEAVAADGVPALAQVVPLLVWLMRLIVKPRATAADAHLSGLLGLARIVIGWLGPRGK------EAVGLRGLEGICAAEGGVVGTRGRGLLHHVYHECLFDIATHDNHGPLAPPKCRSEGCRANAFGLLTDLATDCRANVAVLIDLLLRHXXXXXXXXXXXXXXXXXXXVKPPKPTRSASSPDAKGGAGCVERVSWAYAPRQTDKAECGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEGVVPREENLLYQLQDVDEFL 1547
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 139 bits (349), Expect = 1.500e-30
Identity = 77/189 (40.74%), Postives = 105/189 (55.56%), Query Frame = 1 
Query: 1180 GLLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            GL+H ++H CLF+I T E HGP APP+C++   R  AF LLT+LA + + N A L +LL++                                      G +R  W Y P   +KA CGYVGL+NLGATCYMNSL+QQ FM+P  R+G+L          +++  E+   +EE+LL+QLQ +FGYLQES
Sbjct: 1310 GLVHELFHKCLFNIPTMERHGPDAPPQCKTSSTRNCAFRLLTELADSTQENYAALADLLVQQHRD----------------------------------GEKRSLWKYQPSAYEKAACGYVGLKNLGATCYMNSLMQQFFMIPGFRWGML----------EVQDSEEK--KEESLLWQLQTIFGYLQES 1452
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: F0ZN87_DICPU (Ubiquitinyl hydrolase 1 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZN87_DICPU)

HSP 1 Score: 135 bits (339), Expect = 2.680e-29
Identity = 71/189 (37.57%), Postives = 100/189 (52.91%), Query Frame = 1 
Query: 1180 GLLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            GL+  ++H+CLF+IAT ENHGP  PPKC++   R   F +L +LA  C  N+  +  LL+ H                                       +R  WSY P   +K+ CGYVGL+NLGATCY+NSL+QQLFM+P  R+ ++  +         EK   P  ++E+LLYQL+++F  LQES
Sbjct: 1215 GLVKEIFHECLFNIATAENHGPTCPPKCKTRDSRDVCFAVLLELAKGCPENLKEITTLLMDHHKPEE----------------------------------KRSLWSYYPAGNEKSTCGYVGLKNLGATCYINSLMQQLFMIPGFRYNIIQSE---------EKSLTPQDQQESLLYQLKIIFANLQES 1360
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: D3BM73_POLPP (Ubiquitin domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BM73_POLPP)

HSP 1 Score: 134 bits (336), Expect = 6.320e-29
Identity = 71/188 (37.77%), Postives = 99/188 (52.66%), Query Frame = 1 
Query: 1183 LLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            L+  ++H+CLFDIAT ENHGP  PPKC++   R   F LL +LA NC  N  +L++LLL                                          R  W+Y P   +K+ CGYVGL+NLGATCY+NSL+QQLFM+PA R+ ++             + ++  P  ++LLYQL+++F  LQES
Sbjct: 1184 LITDLFHNCLFDIATAENHGPLCPPKCKNRESRDACFALLLELANNCEENYRMLVSLLLEQNKPEE----------------------------------RRTLWNYLPAGNEKSTCGYVGLKNLGATCYINSLMQQLFMIPAFRYSII-------------QAQEANPTPDSLLYQLKIIFANLQES 1324
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: A0A151ZCD3_9MYCE (Ubiquitin domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCD3_9MYCE)

HSP 1 Score: 132 bits (331), Expect = 2.690e-28
Identity = 73/189 (38.62%), Postives = 99/189 (52.38%), Query Frame = 1 
Query: 1180 GLLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            GL+  ++H+CLFDIAT ENHGP+ PPKC+ +  R   F +L +LA     N   L  LL+ H                                       +R  WSY P   +K+ CGYVGL+NLGATCY+NSL+QQLFM+P  RF ++  +         EK +    ++E+LLYQL+V+F  LQES
Sbjct: 1267 GLVQEIFHNCLFDIATAENHGPECPPKCKVKESRDICFDVLLELAKEQEENFRELTCLLMEHHKPDE----------------------------------KRTLWSYYPAGNEKSQCGYVGLKNLGATCYINSLMQQLFMIPGFRFNIVQAE---------EKYKDIQEQQESLLYQLRVIFSNLQES 1412
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: Q553T4_DICDI (Ubiquitinyl hydrolase 1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q553T4_DICDI)

HSP 1 Score: 131 bits (330), Expect = 3.610e-28
Identity = 70/189 (37.04%), Postives = 100/189 (52.91%), Query Frame = 1 
Query: 1180 GLLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            GL+  V+H+CLF+IAT +NHG   PPKC+++  R   F +L +LA  C PN+  +  LL+ H                                       +R  WSY P   +K+  GYVGL+NLGATCY+NSL+QQLFM+P  R+ ++  +         EK   P  ++E+LLYQL+++F  LQES
Sbjct: 1302 GLVKEVFHECLFNIATADNHGSTCPPKCKTKESRDICFAVLLELAKGCEPNLREITTLLMEHHKPEE----------------------------------KRSLWSYFPAGNEKSITGYVGLKNLGATCYINSLMQQLFMIPGFRYNIIQSE---------EKYNSPQEQQESLLYQLKIIFANLQES 1447
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: F4PHI7_CAVFA (Ubiquitinyl hydrolase 1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PHI7_CAVFA)

HSP 1 Score: 130 bits (326), Expect = 1.140e-27
Identity = 72/188 (38.30%), Postives = 98/188 (52.13%), Query Frame = 1 
Query: 1183 LLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            L+  ++H CLFDIAT ENHGP  PPKC+++  R   F LL +LA +C  N + L+ LL+                                         +R  W+Y P  T+K+ CGYVGL+NLGATCY+NSL+QQLFM+PA R+ +L  D             +  P  E+LL QL+++F  LQES
Sbjct: 1278 LVGEIFHQCLFDIATAENHGPLCPPKCKTKESRDVCFTLLLELAKDCAENYSRLVQLLILQNKPDE----------------------------------KRALWNYQPTGTEKSGCGYVGLKNLGATCYINSLMQQLFMIPAFRYSILQTD-------------EVNPTNESLLQQLKIIFANLQES 1418
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: UPI000644FF27 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FF27)

HSP 1 Score: 123 bits (308), Expect = 1.950e-25
Identity = 66/188 (35.11%), Postives = 96/188 (51.06%), Query Frame = 1 
Query: 1183 LLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            L+  V+H+CLFDIA+ +NHGP+  PK +++  R   FGLL +LA NC  N  +L++LL                                           R  W+Y P   +K+ CGYVGL+NLGATCY+NSL+QQL+M+P  R+ +L  +            +      ++LLYQL+++F  LQES
Sbjct: 1236 LVRAVFHECLFDIASADNHGPRCSPKAKTKESREACFGLLQELAANCEENYRILVSLLTNQNKPDE----------------------------------RRAMWNYYPVGNEKSSCGYVGLKNLGATCYINSLMQQLYMIPRFRYSILQAE------------DSNPNTADSLLYQLKIIFANLQES 1377
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BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Match: UPI000644EBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644EBF2)

HSP 1 Score: 123 bits (308), Expect = 1.950e-25
Identity = 70/192 (36.46%), Postives = 94/192 (48.96%), Query Frame = 1 
Query: 1171 GTRGLLHHVYHDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLINLLLRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCLGGGIERVSWSYAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFRTPEQIEKGEQPVPREENLLYQLQVLFGYLQES 1746
            G   L+  V+H+CLF+IAT +NHGP  PPK +S+  R   F LL +LA NC  N   L+  L+                                          R  W+Y P   +K+ CGYVGL+NLGATCY+NSL+QQLFM+P  R+ +L         E       P    ++LLYQL+++F  LQES
Sbjct: 1249 GNDHLIQEVFHECLFNIATADNHGPLCPPKAKSKDSRDACFALLLELANNCEENYKELVLQLIEQNKPDE----------------------------------RRSVWNYFPMGNEKSSCGYVGLKNLGATCYINSLMQQLFMIPGFRYSILQA-------EDSATNANP----DSLLYQLKIIFANLQES 1395
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12704.2173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFW4_9PHAE8.670e-17260.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK75_ECTSI3.050e-16961.19Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
L8GPA8_ACACA1.500e-3040.74Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
F0ZN87_DICPU2.680e-2937.57Ubiquitinyl hydrolase 1 n=1 Tax=Dictyostelium purp... [more]
D3BM73_POLPP6.320e-2937.77Ubiquitin domain-containing protein n=1 Tax=Polysp... [more]
A0A151ZCD3_9MYCE2.690e-2838.62Ubiquitin domain-containing protein n=1 Tax=Tieghe... [more]
Q553T4_DICDI3.610e-2837.04Ubiquitinyl hydrolase 1 n=1 Tax=Dictyostelium disc... [more]
F4PHI7_CAVFA1.140e-2738.30Ubiquitinyl hydrolase 1 n=1 Tax=Cavenderia fascicu... [more]
UPI000644FF271.950e-2535.11hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI000644EBF21.950e-2536.46hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12704contigL-elsbetiae_contig12704:725..5367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score548.5
Seed ortholog evalue3.7e-153
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons5
Model size1747
Cds size1746
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12704.2173.1prot_L-elsbetiae_contig12704.2173.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12704 725..5367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815459.935292-CDS-L-elsbetiae_contig12704:724..7511622815459.935292-CDS-L-elsbetiae_contig12704:724..751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 725..751 -
1691682908.236571-CDS-L-elsbetiae_contig12704:724..7511691682908.236571-CDS-L-elsbetiae_contig12704:724..751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 725..751 -
1622815459.9461827-CDS-L-elsbetiae_contig12704:1575..18541622815459.9461827-CDS-L-elsbetiae_contig12704:1575..1854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 1576..1854 -
1691682908.249277-CDS-L-elsbetiae_contig12704:1575..18541691682908.249277-CDS-L-elsbetiae_contig12704:1575..1854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 1576..1854 -
1622815459.9710581-CDS-L-elsbetiae_contig12704:2103..22781622815459.9710581-CDS-L-elsbetiae_contig12704:2103..2278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 2104..2278 -
1691682908.2645853-CDS-L-elsbetiae_contig12704:2103..22781691682908.2645853-CDS-L-elsbetiae_contig12704:2103..2278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 2104..2278 -
1622815459.9893713-CDS-L-elsbetiae_contig12704:2941..36001622815459.9893713-CDS-L-elsbetiae_contig12704:2941..3600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 2942..3600 -
1691682908.2750003-CDS-L-elsbetiae_contig12704:2941..36001691682908.2750003-CDS-L-elsbetiae_contig12704:2941..3600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 2942..3600 -
1622815460.00705-CDS-L-elsbetiae_contig12704:4761..53671622815460.00705-CDS-L-elsbetiae_contig12704:4761..5367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 4762..5367 -
1691682908.284385-CDS-L-elsbetiae_contig12704:4761..53671691682908.284385-CDS-L-elsbetiae_contig12704:4761..5367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12704 4762..5367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12704.2173.1

>prot_L-elsbetiae_contig12704.2173.1 ID=prot_L-elsbetiae_contig12704.2173.1|Name=mRNA_L-elsbetiae_contig12704.2173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=582bp
MERLPVILFTTCRCYRELAFPMIGTPAKPQQSTVPTAATAAAAGATATGG
NSSGACKGEFDPLVETVKAARSSSSIITTLLTFPHPAQPSAPLPHHSHHT
AEGETGVGAGGGICASATHGCLTLSARASMAMDMASSTAFGQAVREALVR
SPSRELRVNARSMLASLSRIDHEIAAEVEAYERQGEGQGGERGGFISQTT
VMAQLLISLVPYCRGEPDGARCRELFELLSDFLSKGSVDAYSLCAALPAL
HPPSPPPAGAAAADTDGPHATGNNGGGRGGGHADLDGPLPGPAPPAEREL
TSTAVAALSAAVAADGVPALAHVVPLLVWLMRLILEPRMTPADGYLSGLL
GLARIIIGWLGPHGKGGGGGGGGGGGGGGGGGGGGGGPGGGTRGLLHHVY
HDCLFDIATHENHGPQAPPKCRSEGCRANAFGLLTDLATNCRPNVAVLIN
LLLRHHSGSSPCQPPSAAAAATPAAVAGLPLSGGGGGGCLGGGIERVSWS
YAPRQTDKADCGYVGLQNLGATCYMNSLLQQLFMVPALRFGVLSCDPFFR
TPEQIEKGEQPVPREENLLYQLQVLFGYLQES
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mRNA from alignment at L-elsbetiae_contig12704:725..5367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12704.2173.1 ID=mRNA_L-elsbetiae_contig12704.2173.1|Name=mRNA_L-elsbetiae_contig12704.2173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4643bp|location=Sequence derived from alignment at L-elsbetiae_contig12704:725..5367- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGTTTACCGGTGATCCTGTTCACGACTTGTCGGTGCTACCGCGA
GCTGGCGTTCCCGATGATTGGGACGCCAGCAAAGCCGCAGCAATCCACCG
TCCCCACCGCCGCTACCGCCGCCGCCGCCGGCGCGACCGCGACCGGCGGC
AACAGCAGCGGGGCCTGCAAAGGAGAGTTCGACCCTCTGGTGGAGACCGT
CAAGGCGGCGCGGTCGAGCTCGTCGATCATAACCACCCTGCTCACGTTCC
CGCACCCCGCGCAGCCGAGCGCCCCCCTTCCCCACCACTCCCACCACACC
GCGGAGGGGGAGACGGGGGTTGGGGCGGGGGGGGGCATCTGTGCCTCCGC
GACCCACGGCTGCCTGACGCTGAGCGCGAGGGCGAGCATGGCGATGGACA
TGGCCTCGAGCACCGCGTTCGGGCAGGCTGTCCGGGAGGCGCTGGTGCGG
TCCCCGTCGCGGGAGCTGCGGGTCAACGCGAGGTCGATGCTCGCCAGTCT
GTCGAGGATCGACCACGAGATCGCGGCGGAGGTGGAGGCGTACGAACGGC
AGGGAGAGGGTCAAGGCGGCGAGAGGGGGGGCTTCATCAGCCAGACCACG
GTTATGGTGAGAGAGAGGGGGAGAGGATGAGGACGGGAGAATATTTTTTT
GTTTCTCCGCATGTTGTTTCTCCCATCAGCTCTCTGGTCCAAAACATTAA
TGAAGGCCGCGGTGGTCACGAAACAGGGCGCACTCGACGCCGCCGAACAA
AAAGTAGAACATTAGCTCGTATGTACATACTTCGAAGTACAAGTACAAGA
TCCCCCTTCGGAGCGAGCTCATGAAAGCACAGCGGTAGAGGGGGGTGGTG
CAAGACCAAAGCAAACATGCGAAGGCAGCAGAAGTACTCCTAAATTTACA
ACTGAAAAAAAACAGCAGCAGCTGCTGCTGCTGTGTTTCAGCTGCTGCTG
TGTTTTGAGAACCGAACGAAGCAGCAGCTGCTGTGCATGCTGAAGCAAAC
AAACAACTGCTTCTTTTTCTGTGCTGCCGCTCCCTTGAACCAAACAGCGC
TGTGTCGGTCTGTGCTCATCAGGTACAAAAGCTGTCCAGTCTCCTGGCAT
GTGCTGCCATGCTCAAACCAACTGCTGTCATACTGGCGTGTTTTTGGGCT
ATTGGAGGCCGACAGCCTACTGATTCAGATTTCGGGACAGAAGTTCCCAG
AGGCCAATTTGTATATGCATCTATAACCGAGATTGATAATCCCCAAAAAT
GAAATAACTCCCGGGGCCCCGTAGTGACAAAAGTGCTGGAGCCATCGAAA
GATCTTAAGAAACACACGCAGGAAATGAAGGGTGCACTAAAAAAACGCGT
CTCCAGCGGGCCCGGCGCGGCGGGGCGCGGAGCGGCGCGTCACGTTGCAC
GCGAAATGCGTTGTTTAGCGGACGCAGACGCGTCGCATCCTTTTGTCTTG
TAAAATATTGTACATATAAGCTACATGCGGAATTTATATTTCTTCGATAT
CCTGTTCTTCTAGTTCTTCTTCTTGCTGTGAGAGTGAGTGCCGCACGAGG
ATTTTTTTTTTTTTAACTAAACAATGAATCAAAGATGGAACCTACCCCAC
ACTAGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATACAGTGAC
GTAATATTTGGCGAAGCGAGCTGTTTTTTCTGGCGCGCTTGCACGCCCCT
AACCCCCCCCCTTCTTCCTCTGCGCCTTGCCTATACGATACCCCGCTGTG
TCTCGTCTTTGCCGCAGGCTCAGCTGCTGATCTCCCTGGTGCCTTACTGC
AGAGGCGAGCCCGACGGCGCCAGGTGCCGCGAGCTCTTCGAGCTTCTGTC
TGATTTCCTGAGCAAGGGCAGCGTTGACGCCTACTCGCTGTGCGCCGCCC
TCCCGGCCCTGCATCCGCCCTCTCCGCCCCCGGCGGGCGCCGCCGCCGCC
GACACGGACGGGCCGCACGCCACCGGCAACAACGGCGGCGGCAGGGGCGG
CGGTCACGCAGACCTAGACGGGCCGCTTCCGGGGCCGGCGCCCCCCGCGG
AGCGCGAGCTCACCTCGACGGCGGTGGCGGCGCTCTCGGCGGCGGTCGCG
GCGGACGGGGTTCCGGCGCTAGCCCACGTCGTGCCGCTGCTGGTCTGGCT
CATGCGGCTGATCTTGGAGCCCCGGATGACCCCGGCCGACGGCTACCTCT
CCGGCCTGCTCGGCCTCGCGCGGATCATCATCGGCTGGCTCGGGCCGCAC
GGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGACGAGAGGGCTGCTGC
ACCACGTGTACCACGACTGCCTGTTCGACATCGCTACGCATGAGAACCAC
GGCCCTCAGGCTCCTCCCAAGTGCAGGTGGGTCGGGGAGGGGGTGGGGAG
GGCGGGGGGTCCGTGTTTTTCGGTTGCTTTGTGTTCGTTGTACATGAGTT
TGATTGCTGGCCACGGTGATGGGCGGTACGCTAGGAAATGCCGCCACCTG
GAGCGTGCGTTCGTCTGCGGTATTCATGTACATAGAAGTGTCTTTAGACA
AAGCTTGGTTCGCCGTTTCTTCCTGCTTTTTGCGCTGCTGAGCTACGATC
GGAAAGAGCGGTCTGGCAGTTCAATGCGATGCCTTTTCTTCCTAGAAAGT
AGTACTTATATATTGTTCGCGCGTGAACCGTATTTCTTTCTCCGCACCGT
TCACCTACCCCTCACCGGTGGGCGGAAAAACAAATGTGCGGGCCTGTTTT
TGTTAGTAGTCCCCCCCCCAAACGCGGTCTAATGTACCGACGTCGTGCAA
GCGCGTATGTATGTATGTGTACGTACGCGAGAGAAACGCCTCCAAGAGAC
GACACACTGGTCCGAGATTTTTCAACTGGTATACTACGTACCATACACAC
GTACGTACGAGTATGTTCGACCCTTGCGCAACCAGGGAATCTCAATCCCC
CCCCCCCCCGTGCTATTCACCTACCCGCCGCCGCCGCCGCCCATCCCGCC
CGCCCTCCTTGGCCACCAAACCGCACAACACGTTCGTAGGTCGGAGGGCT
GCCGGGCCAACGCGTTCGGGCTCTTGACGGACCTTGCCACCAACTGCCGC
CCCAACGTGGCGGTCCTCATCAACCTCCTCCTCCGACACCACTCTGGCTC
CTCCCCCTGCCAGCCACCGTCGGCGGCGGCAGCGGCGACACCGGCAGCGG
TGGCAGGCCTCCCGGTGGCCCCGCCACTCCCGGCTGCTGCCACCGGCGGC
GACGAAATCTGCAACGACGGTGCCCCCGAGGACAATCACGGTGCCCCCGC
GGTGACCGGCGGTTCTGCTGTGCAACGGGAACAGCACCATGCGGCGGGCT
CGGCAGGGGATGACGACACCGCCGTCCCCGCCGCGGCTACCGCGGCAGCG
GCGGCAGCAGCGGCAGCGACGGCGGCGGCGGCGGCGGCTGCAGCTCCAGC
CGATGGTTTTGAGCTCTCTGGCGGCGGCGGCGGTGGCTGCCTCGGAGGCG
GTATCGAGCGAGTGTCGTGGTCCTACGCCCCTCGGCAGACGGACAAAGCG
GACTGCGGGTATGTGGGGCTGCAGAACCTGGGGGCGACGTGCTACATGAA
CTCGCTGCTGCAGCAGCTCTTCATGGTCCCGGCTCTGCGGTTCGGGGTGC
TGAGCTGCGACCCGTTCTTCAGGACCCCGGAGCAGATCGAGAAGGGGGAG
CAGCCGGTGCCTCGGGAGGAGAACCTCTTGTATCAGCTCCAGGTTAGCTT
GGGTTCGCTTGGCGTTCGTTCTGAGTCAAGCGGAGTTTTGGGGTTATTTT
TTTTTTTTAAGAAAAGCAGTTGATTAAAAAAAATGTTTTATTTTATTTTT
ATTGTCGTATACCCTTTGTGAGGGTACACACAGTTTTTGCTTGTTTCTGC
TGGCGGCAGAGGGTGTGACTTCGGGGTTTGCGTGCCCTTTGTGCCGTTGT
TGTTGTTGTTGTTGTACCGGAGGTGTGGCCGTGAGTAAGCGGAGGTGTTC
TTGCGTGACTGTTTTGTTTAAAATAATGTATACAGATTTCAGCAGTCTAC
GTCAAGTCTGTGAAAAATTCGTTCCGGAGAGACTGCTACTGCTGTATTTA
GGCCAAAAATAAAAAAATCCCCGGTCCGAGATATAATCGCGCATTCCTCG
GACCTGTTGCTAGCTTGTTGAGAAACCTTCGTGTGTGTGTATGTTTGTCT
TTTTATTTCGTTCTTGCCGGAATCGAAAAGGAGAAAGGGGGACAAAGGAG
GGCGGCGACGGTGGGTGAATTTTCTGATGCCCAACGCAAGCGGCCCCCGT
TAATTCAATGAATTAATGTCACATATTCGGACACCCCTTCGGCTAGATAT
TTCCAACGTCAGCTCCCCTTTTCGGCACTGGCACTCTCTCCTTGCCGGGG
AGGAATCGAATCAAGCTTTGAAAATCTGTCCAGGGGGTGCAGTATCTTGT
GCCACCTACGGTACCTACTTATTTGTGCGTGCCCCCTCTTCCGTCCTCAC
GGTCGGATGGTGGTCTATCGTGTTTCGTGTTTCTTCTCCACCCCCCCCTC
CCCCTTTTTGGCACAGGTTTTGTTCGGCTACCTCCAAGAGTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12704:725..5367-

>mRNA_L-elsbetiae_contig12704.2173.1 ID=mRNA_L-elsbetiae_contig12704.2173.1|Name=mRNA_L-elsbetiae_contig12704.2173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3492bp|location=Sequence derived from alignment at L-elsbetiae_contig12704:725..5367- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGTTTACCGGTGATCCTGTTCACGACTTGTCGGTGCTACCGCGA
GCTGGCGTTCCCGATGATTGGGACGCCAGCAAAGCCGCAGCAATCCACCG
TCCCCACCGCCGCTACCGCCGCCGCCGCCGGCGCGACCGCGACCGGCGGC
AACAGCAGCGGGGCCTGCAAAGGAGAGTTCGACCCTCTGGTGGAGACCGT
CAAGGCGGCGCGGTCGAGCTCGTCGATCATAACCACCCTGCTCACGTTCC
CGCACCCCGCGCAGCCGAGCGCCCCCCTTCCCCACCACTCCCACCACACC
GCGGAGGGGGAGACGGGGGTTGGGGCGGGGGGGGGCATCTGTGCCTCCGC
GACCCACGGCTGCCTGACGCTGAGCGCGAGGGCGAGCATGGCGATGGACA
TGGCCTCGAGCACCGCGTTCGGGCAGGCTGTCCGGGAGGCGCTGGTGCGG
TCCCCGTCGCGGGAGCTGCGGGTCAACGCGAGGTCGATGCTCGCCAGTCT
GTCGAGGATCGACCACGAGATCGCGGCGGAGGTGGAGGCGTACGAACGGC
AGGGAGAGGGTCAAGGCGGCGAGAGGGGGGGCTTCATCAGCCAGACCACG
GTTATGATGGAGCGTTTACCGGTGATCCTGTTCACGACTTGTCGGTGCTA
CCGCGAGCTGGCGTTCCCGATGATTGGGACGCCAGCAAAGCCGCAGCAAT
CCACCGTCCCCACCGCCGCTACCGCCGCCGCCGCCGGCGCGACCGCGACC
GGCGGCAACAGCAGCGGGGCCTGCAAAGGAGAGTTCGACCCTCTGGTGGA
GACCGTCAAGGCGGCGCGGTCGAGCTCGTCGATCATAACCACCCTGCTCA
CGTTCCCGCACCCCGCGCAGCCGAGCGCCCCCCTTCCCCACCACTCCCAC
CACACCGCGGAGGGGGAGACGGGGGTTGGGGCGGGGGGGGGCATCTGTGC
CTCCGCGACCCACGGCTGCCTGACGCTGAGCGCGAGGGCGAGCATGGCGA
TGGACATGGCCTCGAGCACCGCGTTCGGGCAGGCTGTCCGGGAGGCGCTG
GTGCGGTCCCCGTCGCGGGAGCTGCGGGTCAACGCGAGGTCGATGCTCGC
CAGTCTGTCGAGGATCGACCACGAGATCGCGGCGGAGGTGGAGGCGTACG
AACGGCAGGGAGAGGGTCAAGGCGGCGAGAGGGGGGGCTTCATCAGCCAG
ACCACGGTTATGGCTCAGCTGCTGATCTCCCTGGTGCCTTACTGCAGAGG
CGAGCCCGACGGCGCCAGGTGCCGCGAGCTCTTCGAGCTTCTGTCTGATT
TCCTGAGCAAGGGCAGCGTTGACGCCTACTCGCTGTGCGCCGCCCTCCCG
GCCCTGCATCCGCCCTCTCCGCCCCCGGCGGGCGCCGCCGCCGCCGACAC
GGACGGGCCGCACGCCACCGGCAACAACGGCGGCGGCAGGGGCGGCGGTC
ACGCAGACCTAGACGGGCCGCTTCCGGGGCCGGCGCCCCCCGCGGAGCGC
GAGCTCACCTCGACGGCGGTGGCGGCGCTCTCGGCGGCGGTCGCGGCGGA
CGGGGTTCCGGCGCTAGCCCACGTCGTGCCGCTGCTGGTCTGGCTCATGC
GGCTGATCTTGGAGCCCCGGATGACCCCGGCCGACGGCTACCTCTCCGGC
CTGCTCGGCCTCGCGCGGATCATCATCGGCTGGCTCGGGCCGCACGGGAA
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGCCGGGGGGGGGGACGAGAGGGCTGCTGCACCAC
GTGTACCACGACTGCCTGTTCGACATCGCTACGCATGAGAACCACGGCCC
TCAGGCTCCTCCCAAGTGCAGGCTCAGCTGCTGATCTCCCTGGTGCCTTA
CTGCAGAGGCGAGCCCGACGGCGCCAGGTGCCGCGAGCTCTTCGAGCTTC
TGTCTGATTTCCTGAGCAAGGGCAGCGTTGACGCCTACTCGCTGTGCGCC
GCCCTCCCGGCCCTGCATCCGCCCTCTCCGCCCCCGGCGGGCGCCGCCGC
CGCCGACACGGACGGGCCGCACGCCACCGGCAACAACGGCGGCGGCAGGG
GCGGCGGTCACGCAGACCTAGACGGGCCGCTTCCGGGGCCGGCGCCCCCC
GCGGAGCGCGAGCTCACCTCGACGGCGGTGGCGGCGCTCTCGGCGGCGGT
CGCGGCGGACGGGGTTCCGGCGCTAGCCCACGTCGTGCCGCTGCTGGTCT
GGCTCATGCGGCTGATCTTGGAGCCCCGGATGACCCCGGCCGACGGCTAC
CTCTCCGGCCTGCTCGGCCTCGCGCGGATCATCATCGGCTGGCTCGGGCC
GCACGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGACGAGAGGGCTG
CTGCACCACGTGTACCACGACTGCCTGTTCGACATCGCTACGCATGAGAA
CCACGGCCCTCAGGCTCCTCCCAAGTGCAGGTCGGAGGGCTGCCGGGCCA
ACGCGTTCGGGCTCTTGACGGACCTTGCCACCAACTGCCGCCCCAACGTG
GCGGTCCTCATCAACCTCCTCCTCCGACACCACTCTGGCTCCTCCCCCTG
CCAGCCACCGTCGGCGGCGGCAGCGGCGACACCGGCAGCGGTGGCAGGCC
TCCCGGTCGGAGGGCTGCCGGGCCAACGCGTTCGGGCTCTTGACGGACCT
TGCCACCAACTGCCGCCCCAACGTGGCGGTCCTCATCAACCTCCTCCTCC
GACACCACTCTGGCTCCTCCCCCTGCCAGCCACCGTCGGCGGCGGCAGCG
GCGACACCGGCAGCGGTGGCAGGCCTCCCGCTCTCTGGCGGCGGCGGCGG
TGGCTGCCTCGGAGGCGGTATCGAGCGAGTGTCGTGGTCCTACGCCCCTC
GGCAGACGGACAAAGCGGACTGCGGGTATGTGGGGCTGCAGAACCTGGGG
GCGACGTGCTACATGAACTCGCTGCTGCAGCAGCTCTTCATGGTCCCGGC
TCTGCGGTTCGGGGTGCTGAGCTGCGACCCGTTCTTCAGGACCCCGGAGC
AGATCGAGAAGGGGGAGCAGCCGGTGCCTCGGGAGGAGAACCTCTTGTAT
CAGCTCCAGCTCTCTGGCGGCGGCGGCGGTGGCTGCCTCGGAGGCGGTAT
CGAGCGAGTGTCGTGGTCCTACGCCCCTCGGCAGACGGACAAAGCGGACT
GCGGGTATGTGGGGCTGCAGAACCTGGGGGCGACGTGCTACATGAACTCG
CTGCTGCAGCAGCTCTTCATGGTCCCGGCTCTGCGGTTCGGGGTGCTGAG
CTGCGACCCGTTCTTCAGGACCCCGGAGCAGATCGAGAAGGGGGAGCAGC
CGGTGCCTCGGGAGGAGAACCTCTTGTATCAGCTCCAGGTTTTGTTCGGC
TACCTCCAAGAGTCAGTTTTGTTCGGCTACCTCCAAGAGTCA
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