mRNA_L-elsbetiae_contig12702.2170.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12702.2170.1
Unique NamemRNA_L-elsbetiae_contig12702.2170.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12702.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12702contigL-elsbetiae_contig12702:8..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size556
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12702.2170.1prot_L-elsbetiae_contig12702.2170.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12702 226..552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815459.3038437-UTR-L-elsbetiae_contig12702:7..2251622815459.3038437-UTR-L-elsbetiae_contig12702:7..225Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12702 8..225 +
1691682908.1556082-UTR-L-elsbetiae_contig12702:7..2251691682908.1556082-UTR-L-elsbetiae_contig12702:7..225Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12702 8..225 +
1622815459.3262262-UTR-L-elsbetiae_contig12702:552..5631622815459.3262262-UTR-L-elsbetiae_contig12702:552..563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12702 553..563 +
1691682908.1846192-UTR-L-elsbetiae_contig12702:552..5631691682908.1846192-UTR-L-elsbetiae_contig12702:552..563Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12702 553..563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815459.3150742-CDS-L-elsbetiae_contig12702:225..5521622815459.3150742-CDS-L-elsbetiae_contig12702:225..552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 226..552 +
1691682908.173643-CDS-L-elsbetiae_contig12702:225..5521691682908.173643-CDS-L-elsbetiae_contig12702:225..552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12702 226..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12702.2170.1

>prot_L-elsbetiae_contig12702.2170.1 ID=prot_L-elsbetiae_contig12702.2170.1|Name=mRNA_L-elsbetiae_contig12702.2170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MYVLTPVRLILWQCYCNVFRRTCVRVCFFSSHLFWRLSTSLRCFFFFFFL
LHIYFQCSVGSLPPGHLARVLNSVCHTEGFLFPEAPTPPFCGASLRFLMD
VYCCRQSR*
back to top

mRNA from alignment at L-elsbetiae_contig12702:8..563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12702.2170.1 ID=mRNA_L-elsbetiae_contig12702.2170.1|Name=mRNA_L-elsbetiae_contig12702.2170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=556bp|location=Sequence derived from alignment at L-elsbetiae_contig12702:8..563+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACTCTTTTGGGATGCCCTTCGACATATCTCTTAACCTCGAGGCCAAG
GAGATGGCGCGCCATTTTTTGAAAATTATCGGGCATTTCGACAACTTGCT
GTGTTTATAATCAAGATAAAAAAATTAATCCAGGTTGTACAGTAAAGCAG
GGGACGCTACCGGGCCACTGATCGTGGCCTACCTTAAGAAAGCAATCAAC
CTTTTAACAGGCACGCATATGTACGTACTTACCCCGGTTCGACTCATTCT
TTGGCAATGCTATTGTAATGTTTTTCGGCGGACATGCGTGCGTGTGTGTT
TTTTTTCGTCCCATCTATTCTGGCGTCTGTCCACCTCGCTCAGGTGTTTT
TTTTTCTTTTTTTTTCTTCTTCACATTTATTTCCAGTGCTCGGTGGGCTC
TTTGCCACCAGGGCATCTTGCCAGAGTACTGAACAGTGTGTGTCACACAG
AAGGGTTCCTTTTCCCCGAGGCCCCCACTCCCCCCTTCTGCGGTGCTTCC
CTAAGATTTTTAATGGATGTATACTGTTGTAGACAGTCCCGTTGACAGTC
CCCACT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12702:8..563+

>mRNA_L-elsbetiae_contig12702.2170.1 ID=mRNA_L-elsbetiae_contig12702.2170.1|Name=mRNA_L-elsbetiae_contig12702.2170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig12702:8..563+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGTACTTACCCCGGTTCGACTCATTCTTTGGCAATGCTATTGTAA
TGTTTTTCGGCGGACATGCGTGCGTGTGTGTTTTTTTTCGTCCCATCTAT
TCTGGCGTCTGTCCACCTCGCTCAGGTGTTTTTTTTTCTTTTTTTTTCTT
CTTCACATTTATTTCCAGTGCTCGGTGGGCTCTTTGCCACCAGGGCATCT
TGCCAGAGTACTGAACAGTGTGTGTCACACAGAAGGGTTCCTTTTCCCCG
AGGCCCCCACTCCCCCCTTCTGCGGTGCTTCCCTAAGATTTTTAATGGAT
GTATACTGTTGTAGACAGTCCCGTTGAATGTACGTACTTACCCCGGTTCG
ACTCATTCTTTGGCAATGCTATTGTAATGTTTTTCGGCGGACATGCGTGC
GTGTGTGTTTTTTTTCGTCCCATCTATTCTGGCGTCTGTCCACCTCGCTC
AGGTGTTTTTTTTTCTTTTTTTTTCTTCTTCACATTTATTTCCAGTGCTC
GGTGGGCTCTTTGCCACCAGGGCATCTTGCCAGAGTACTGAACAGTGTGT
GTCACACAGAAGGGTTCCTTTTCCCCGAGGCCCCCACTCCCCCCTTCTGC
GGTGCTTCCCTAAGATTTTTAATGGATGTATACTGTTGTAGACAGTCCCG
TTGA
back to top