mRNA_L-elsbetiae_contig12679.2158.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12679.2158.1
Unique NamemRNA_L-elsbetiae_contig12679.2158.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12679.2158.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 8.490e-116
Identity = 169/203 (83.25%), Postives = 185/203 (91.13%), Query Frame = 1 
Query:    1 AQSATGRGQRNRRARDLDAMPTGAGEQDEDHDHWQAREAVWASWGDQEAYDKRMAETKDRRDAARTVHDAKQKKKQEELEAASSTSHVTERQEKVPERNGEGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKKIGVIFDESRVRIDGGVHVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRQFILHLTDTTSP 609
            +QSATGRGQRNRRARDLDAM TGAG+QDEDHDHWQAREAVWASW DQEAYDK+MAETKDRRDAARTVH+AKQK+KQEELEAASSTSHVTERQEKV + NGE DI+I +GVY+KR E++HL+YYYDKSY FDPK IGV+F E+ V IDGGVHVVKSVD GKY LEG +STITQWELL NRC EGVTLDTDLR+FI HLTDTTSP
Sbjct:    3 SQSATGRGQRNRRARDLDAMQTGAGKQDEDHDHWQAREAVWASWADQEAYDKKMAETKDRRDAARTVHEAKQKEKQEELEAASSTSHVTERQEKVSDGNGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDTTSP 205
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BLAST of mRNA_L-elsbetiae_contig12679.2158.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 6.230e-93
Identity = 149/197 (75.63%), Postives = 168/197 (85.28%), Query Frame = 1 
Query:    1 AQSATGRGQRNRRARDLDAMPTGAGEQDEDHDHWQAREAVWASWGDQEAYDKRMAETKDRRDAARTVHDAKQKKKQEELEAASSTSHVTERQEKVPERNGEGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKKIGVIFDESRVRIDGGVHVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRQFILHL 591
            +QSA  RG RNR A     MPTGA ++D+DHDHW+ REAVWA WGDQEAYDK+MAETK++RDAAR VH+A QKK+Q ELEAASST HVTERQE+  + NGEGDI+ISDGVYYKRAEL+ LQYYYDKSYAFDPK IGV+  E+ V+ID  +H VKSVDHGKYTLEGRES ITQWELLENRCDE VTLDTDLR+FILHL
Sbjct:    3 SQSAARRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQAELEAASSTPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHL 199
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BLAST of mRNA_L-elsbetiae_contig12679.2158.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 3.320e-61
Identity = 138/332 (41.57%), Postives = 163/332 (49.10%), Query Frame = 1 
Query:   28 RNRRARDLDAMPTGAGEQDEDHDHWQAREAVWASWGDQEAYDKRMAETKDRRDAARTVHDAKQKKKQEELEAASSTSHVTERQEK-------------VPERN-----------------------------------------------------------------------------------------------------------------------------------GEGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKKIGVIFDESRVRIDGGVHVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRQFILHL 591
            RNR A     MPTGA ++D+DHDHW+ REA WA WG Q+A DK+MA+TK++RD AR VH+A QKK++E+LEA SST HVTERQE+             +PE N                                                                                                                                   G+GDI+ISDGVYYKRAEL++LQYYYDKSY  DP+ I V+F ++RV+IDGGVHVVKSVDHGKYTLEGRESTITQWELLE RCDEGVTL TDLR+FILHL
Sbjct:   24 RNRTATVPGKMPTGADKKDQDHDHWRKREAEWAGWGVQKASDKKMADTKEKRDDAREVHEANQKKREEDLEATSSTPHVTERQEEGSLGNRAKTTAAAIPEDNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNGGGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHL 355
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BLAST of mRNA_L-elsbetiae_contig12679.2158.1 vs. uniprot
Match: A0A6H5JU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU26_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.130e-20
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   58 MPTGAGEQDEDHDHWQAREAVWASWGDQEAYDKRMAETKDRRDAARTVHDAKQKKKQ 228
            MPTGAG++D+DHDHW  REAVWA WG QEAYDK+MAETK+RRDAAR  H+ K+K+KQ
Sbjct:    1 MPTGAGKKDQDHDHWPLREAVWAGWGYQEAYDKKMAETKERRDAAREAHEIKRKEKQ 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12679.2158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQV3_ECTSI8.490e-11683.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ27_ECTSI6.230e-9375.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE3.320e-6141.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU26_9PHAE3.130e-2073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12679contigL-elsbetiae_contig12679:2583..4270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7FHJ0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EVBK@1,2SXC2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_000890.1
Exons3
Model size612
Cds size612
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12679.2158.1prot_L-elsbetiae_contig12679.2158.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12679 2583..4270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.2129424-CDS-L-elsbetiae_contig12679:2582..26031622815457.2129424-CDS-L-elsbetiae_contig12679:2582..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12679 2583..2603 -
1691682907.1133864-CDS-L-elsbetiae_contig12679:2582..26031691682907.1133864-CDS-L-elsbetiae_contig12679:2582..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12679 2583..2603 -
1622815457.2249095-CDS-L-elsbetiae_contig12679:2856..31501622815457.2249095-CDS-L-elsbetiae_contig12679:2856..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12679 2857..3150 -
1691682907.129058-CDS-L-elsbetiae_contig12679:2856..31501691682907.129058-CDS-L-elsbetiae_contig12679:2856..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12679 2857..3150 -
1622815457.23601-CDS-L-elsbetiae_contig12679:3973..42701622815457.23601-CDS-L-elsbetiae_contig12679:3973..4270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12679 3974..4270 -
1691682907.1387746-CDS-L-elsbetiae_contig12679:3973..42701691682907.1387746-CDS-L-elsbetiae_contig12679:3973..4270Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12679 3974..4270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12679.2158.1

>prot_L-elsbetiae_contig12679.2158.1 ID=prot_L-elsbetiae_contig12679.2158.1|Name=mRNA_L-elsbetiae_contig12679.2158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
AQSATGRGQRNRRARDLDAMPTGAGEQDEDHDHWQAREAVWASWGDQEAY
DKRMAETKDRRDAARTVHDAKQKKKQEELEAASSTSHVTERQEKVPERNG
EGDIKISDGVYYKRAELQHLQYYYDKSYAFDPKKIGVIFDESRVRIDGGV
HVVKSVDHGKYTLEGRESTITQWELLENRCDEGVTLDTDLRQFILHLTDT
TSP*
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mRNA from alignment at L-elsbetiae_contig12679:2583..4270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12679.2158.1 ID=mRNA_L-elsbetiae_contig12679.2158.1|Name=mRNA_L-elsbetiae_contig12679.2158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1688bp|location=Sequence derived from alignment at L-elsbetiae_contig12679:2583..4270- (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCT
GGATGCGATGCCGACCGGAGCTGGCGAGCAAGATGAAGACCACGATCACT
GGCAAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTAT
GACAAAAGGATGGCCGAGACGAAGGATCGGCGCGACGCGGCGCGCACGGT
GCACGATGCCAAACAGAAGAAAAAACAGGAGGAGTTGGAGGCTGCTTCTT
CAACATCGCACGTAACCGAGAGGCAGGAGAAGGTTCCCGAACGAAATGTG
AGAAATTTGTGATTGGTTTGTTGCTGCTGGTATGATCAGACGACACACGT
TGCCCCCACACATCGGTTGCGCTTGTGTACGCAACCGCCTTCCGCTCCCT
CTTTCGCTTAAATTGACACCATCTTCCCATCTCTCTCACTCAAAAAAACA
GTGTCAGTCAAAGAGGGCGGTGGGAGCGGAGGAAGCGCAACATCATCCGG
TTGGTGGACGAAAGAGGGCGAAAACAACGGCCGATGCGACTCCTGAAGAC
ATTCGTCTCGAGGCTATGGACGTTGATGACGTTGGTGGAGACGTCGGTGG
CGACTTTGGTGGCGACTTTGGTGGAGATGGCAGCGATGACGACGGTGGAA
GCGGTAGCACCGGTGGCACCGGTGGAGATGGCAGCGATGATGACGGTGGC
AGCGGTGGCGGTGGTGGCAGCGGCGGAGATGGCGGCGATTACGACGGTGG
CAGCGGTGGCGGTGGTGGCAGCGGCGGAGATGGCGGCGATGACGACGGTG
GCAGCGATGGCGGTGGCAGCGACAAGGTTGGTGGCGGTGGCACGGGTGGC
GGTAGTAGCGGCGGTGGTGGCGGCGCCCCCGTGCGGAAGGTCGTGTATAA
AAAACGACCAAAACTATACTCTTCTACAAAAATAATCGCACGCCTGGTTG
AGCCGTGGCAGGACGGAAGTCGTGAGTGGATGGACAGCAAAAAAGAGTCG
GGTGGTGAAAAAGCTCAAGAGAGGGATGGTACGTTCTCCCGCGCAGCAAA
TGAACCGAGTGGAAACACTTCGATACCGGTCATGGTCAAACTACTGGGTG
ATGGCCTGTGTGCTGACCAGGGCGAGGGTGACATCAAGATCTCAGACGGG
GTGTACTACAAGCGTGCAGAGCTTCAGCATTTGCAGTATTACTACGACAA
GTCCTACGCGTTCGACCCGAAGAAGATCGGTGTGATTTTCGACGAGTCGA
GAGTCAGGATCGATGGAGGGGTCCACGTGGTGAAATCAGTCGATCACGGC
AAATACACACTGGAAGGTCGGGAATCCACAATCACCCAGTGGGAGCTGCT
GGAAAACCGGTGCGATGAGGGGGTGACACTGGACACCGACCTCCGGCAGT
TCATCCTCCATCTGGTGACAAAGTATACGGTCATGATGGCTTCGGTTGTA
CCGGCTCTCAGCGGCGTGTTAACTGGGATGCTCTGGAACCCGAATGATGC
CATAGACAGAGCCAATGGGAGTGGTGACGACACAGACCCAGAGAGCAACA
TGAAGACCATCGAGCTAATGTCGATCAAAGAGCGCGTGGATACTCTGCGG
GACTTGTCGCTGGCTGTCTTCACCAAAATCCCCATGGAAGACACCCTGCC
TGCAAACTTCTGGTCAGACCGACACGACGAGTCCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12679:2583..4270-

>mRNA_L-elsbetiae_contig12679.2158.1 ID=mRNA_L-elsbetiae_contig12679.2158.1|Name=mRNA_L-elsbetiae_contig12679.2158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig12679:2583..4270- (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCT
GGATGCGATGCCGACCGGAGCTGGCGAGCAAGATGAAGACCACGATCACT
GGCAAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTAT
GACAAAAGGATGGCCGAGACGAAGGATCGGCGCGACGCGGCGCGCACGGT
GCACGATGCCAAACAGAAGAAAAAACAGGAGGAGTTGGAGGCTGCTTCTT
CAACATCGCACGTAACCGAGAGGCAGGAGAAGGTTCCCGAACGAAATGCG
CAGAGTGCCACAGGGCGAGGTCAAAGAAACCGTAGGGCTAGAGATCTGGA
TGCGATGCCGACCGGAGCTGGCGAGCAAGATGAAGACCACGATCACTGGC
AAGCAAGGGAGGCGGTGTGGGCAAGCTGGGGTGATCAGGAGGCTTATGAC
AAAAGGATGGCCGAGACGAAGGATCGGCGCGACGCGGCGCGCACGGTGCA
CGATGCCAAACAGAAGAAAAAACAGGAGGAGTTGGAGGCTGCTTCTTCAA
CATCGCACGTAACCGAGAGGCAGGAGAAGGTTCCCGAACGAAATGGCGAG
GGTGACATCAAGATCTCAGACGGGGTGTACTACAAGCGTGCAGAGCTTCA
GCATTTGCAGTATTACTACGACAAGTCCTACGCGTTCGACCCGAAGAAGA
TCGGTGTGATTTTCGACGAGTCGAGAGTCAGGATCGATGGAGGGGTCCAC
GTGGTGAAATCAGTCGATCACGGCAAATACACACTGGAAGGTCGGGAATC
CACAATCACCCAGTGGGAGCTGCTGGAAAACCGGTGCGATGAGGGGGTGA
CACTGGACACCGACCTCCGGCAGTTCATCCTCCATCTGGGCGAGGGTGAC
ATCAAGATCTCAGACGGGGTGTACTACAAGCGTGCAGAGCTTCAGCATTT
GCAGTATTACTACGACAAGTCCTACGCGTTCGACCCGAAGAAGATCGGTG
TGATTTTCGACGAGTCGAGAGTCAGGATCGATGGAGGGGTCCACGTGGTG
AAATCAGTCGATCACGGCAAATACACACTGGAAGGTCGGGAATCCACAAT
CACCCAGTGGGAGCTGCTGGAAAACCGGTGCGATGAGGGGGTGACACTGG
ACACCGACCTCCGGCAGTTCATCCTCCATCTGACCGACACGACGAGTCCT
TGAACCGACACGACGAGTCCTTGA
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