mRNA_L-elsbetiae_contig12676.2156.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12676.2156.1
Unique NamemRNA_L-elsbetiae_contig12676.2156.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.680e-28
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 3 
Query:   21 GYRRTRFWFETMGTQRIFERFLGETAALAEERPFSILETGSWEGASAVWIAENLLKNPASLLVCLDTWGGGASFENDGWHMADIE 275
            GY RT + FE  G++ IF+ FLGE    AEERPF +LE+GSWEG SA W+AE+LLK+  SLLVCLDTW GG   EN G+ M  +E
Sbjct:   30 GYNRTGYMFEATGSKNIFQTFLGEMMEAAEERPFFVLESGSWEGGSASWVAEHLLKHSESLLVCLDTWDGGQEMENTGFDMVSVE 114
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BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.580e-22
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:   69 IFERFLGETAALAEERPFSILETGSWEGASAVWIAENLLKNPASLLVCLDTWGGGASFENDGWHMADIE 275
            +F+RF G  A LAEE+PF +LETGSW+G SA WIAE++LK+P S+LVCLDTW G    EN G+ MA IE
Sbjct:   70 VFQRFFGGMAGLAEEQPFHVLETGSWQGESASWIAEHILKHPESILVCLDTWNGSPPPENSGYEMAAIE 138
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BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.240e-18
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 3 
Query:   96 AALAEERPFSILETGSWEGASAVWIAENLLKNPASLLVCLDTWGGGASFENDGWHMADIE 275
            A LAEE+PF +LETGSW+G SA WIAE++LK+P S+LVCLD W G    EN G+ MA IE
Sbjct:    2 AGLAEEQPFHVLETGSWQGESASWIAEHVLKHPESILVCLDKWNGSPPPENSGYDMAAIE 61
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BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Match: UPI00036664F0 (class I SAM-dependent methyltransferase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI00036664F0)

HSP 1 Score: 52.0 bits (123), Expect = 6.300e-6
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 3 
Query:   24 YRRTRFWFETMGTQRIFERFLGETAALAEERPFSILETGSWEGASAVWIAENLLKNPASLLVCLDTWGGGASFENDGWHMADIE 275
            Y+ T +WFE  G + ++++ + +        P +ILE GS+EGASA ++ + L  +    L C+DTW GG   +   + MA +E
Sbjct:    4 YKFTNYWFEE-GARGVWDKLIPKVM------PRTILEVGSFEGASACYLIDKLTGSHDLELFCVDTWDGGIEHQLADFDMASVE 80
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BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Match: A0A6G6XPI9_9VIRU (Class I SAM-dependent methyltransferase n=1 Tax=Dishui Lake large algae virus 1 TaxID=2704073 RepID=A0A6G6XPI9_9VIRU)

HSP 1 Score: 50.1 bits (118), Expect = 3.030e-5
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:   18 MGYRRTRFWFETMGTQRIFERFLGETAALAEERPFSILETGSWEGASAVWIAENLLKNPASLLVCLDTWGGGASFENDGWHMADI 272
            M Y  T  WF   G   I+E+ L       ++ P S+LE GS++G SAVW+ EN+L +  + + C+DT+ G  S E++    AD+
Sbjct:    1 MKYHFTTDWFS--GAIPIWEQILKHL----KDTPCSVLEIGSYQGRSAVWLLENILTHDNAKITCIDTFEG--SEEHNDSQKADL 77
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BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Match: A0A8H3F2L9_9LECA (Uncharacterized protein n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3F2L9_9LECA)

HSP 1 Score: 50.1 bits (118), Expect = 4.330e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 3 
Query:  123 SILETGSWEGASAVWIAENLLKNPASLLVCLDTWGGGASFEND 251
            SILE GS+EGAS  W+ +NL+ +P S L  +DT+ GG   ++D
Sbjct:   58 SILEVGSFEGASTTWLLDNLMSHPGSTLTAVDTFEGGMEHQDD 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12676.2156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FK47_ECTSI2.680e-2858.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK29_ECTSI1.580e-2262.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQS8_9PHAE4.240e-1863.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00036664F06.300e-633.33class I SAM-dependent methyltransferase n=1 Tax=Ko... [more]
A0A6G6XPI9_9VIRU3.030e-536.47Class I SAM-dependent methyltransferase n=1 Tax=Di... [more]
A0A8H3F2L9_9LECA4.330e-548.84Uncharacterized protein n=1 Tax=Heterodermia speci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12676contigL-elsbetiae_contig12676:4226..4972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D7FK47
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2DZ7R@1,2S6WK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size275
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12676.2156.1prot_L-elsbetiae_contig12676.2156.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12676 4226..4955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.0967178-CDS-L-elsbetiae_contig12676:4225..43661622815457.0967178-CDS-L-elsbetiae_contig12676:4225..4366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12676 4226..4366 -
1691682907.0581048-CDS-L-elsbetiae_contig12676:4225..43661691682907.0581048-CDS-L-elsbetiae_contig12676:4225..4366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12676 4226..4366 -
1622815457.1086378-CDS-L-elsbetiae_contig12676:4838..49551622815457.1086378-CDS-L-elsbetiae_contig12676:4838..4955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12676 4839..4955 -
1691682907.0693314-CDS-L-elsbetiae_contig12676:4838..49551691682907.0693314-CDS-L-elsbetiae_contig12676:4838..4955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12676 4839..4955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.1206706-UTR-L-elsbetiae_contig12676:4955..49721622815457.1206706-UTR-L-elsbetiae_contig12676:4955..4972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12676 4956..4972 -
1691682907.08105-UTR-L-elsbetiae_contig12676:4955..49721691682907.08105-UTR-L-elsbetiae_contig12676:4955..4972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12676 4956..4972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12676.2156.1

>prot_L-elsbetiae_contig12676.2156.1 ID=prot_L-elsbetiae_contig12676.2156.1|Name=mRNA_L-elsbetiae_contig12676.2156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
MGYRRTRFWFETMGTQRIFERFLGETAALAEERPFSILETGSWEGASAVW
IAENLLKNPASLLVCLDTWGGGASFENDGWHMADIE
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mRNA from alignment at L-elsbetiae_contig12676:4226..4972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12676.2156.1 ID=mRNA_L-elsbetiae_contig12676.2156.1|Name=mRNA_L-elsbetiae_contig12676.2156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig12676:4226..4972- (Laminarionema elsbetiae ELsaHSoW15)
AGTTGGATGACCGGCAAATGGGATATCGGCGCACGAGGTTTTGGTTCGAA
ACAATGGGAACCCAACGCATCTTCGAGCGCTTTTTGGGCGAAACAGCAGC
CCTTGCGGAAGAACGACCCTTTTCTATACTGGAGGTACTGTAAAGCCGTC
ATTCTTTGATGCACAGAAATAAGGCGTGTGTGACAGGTGTGCAAGTTTCG
AATCGTTCTTCAACAACGCCAGCCATGATGTACCAGCTTCTCCGACTCTC
TGCGCGACAAAGTTCGAATGGCTTCTGTGGAAAACAAGAGAAGGGTTGTA
TACAGCTTCGATCGTCGCATTGATGCAGGCCGAAACAGAACGGGTCCTAC
AGCAAGAAACATCTCGGATGACGGCATCGGAGTTGAATATCATGCATGTC
GCGAGGTGCGGTTGGGCGTGTCTTCCATTTCACGGCCGCCAGCGACTGAA
GAAATCGGCAGTGCCGAATAAACGTCTTCTTCTCGAATGTTTGGTGCTAT
TGTTTCGCCGTTGGGCCCAAGTTGCAACAATAATTTCCATAATTCAGAGC
AGAAAACGATTCTCCTGATTCAAATCGGTTCGACCATTTCACGGCGCGTT
GCTCAGACGGGAAGCTGGGAAGGAGCATCGGCGGTGTGGATCGCTGAGAA
CCTCTTGAAGAACCCAGCATCTCTCCTCGTCTGCCTAGATACCTGGGGTG
GTGGCGCTAGTTTTGAGAACGACGGATGGCACATGGCTGATATTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12676:4226..4972-

>mRNA_L-elsbetiae_contig12676.2156.1 ID=mRNA_L-elsbetiae_contig12676.2156.1|Name=mRNA_L-elsbetiae_contig12676.2156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig12676:4226..4972- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATATCGGCGCACGAGGTTTTGGTTCGAAACAATGGGAACCCAACG
CATCTTCGAGCGCTTTTTGGGCGAAACAGCAGCCCTTGCGGAAGAACGAC
CCTTTTCTATACTGGAGATGGGATATCGGCGCACGAGGTTTTGGTTCGAA
ACAATGGGAACCCAACGCATCTTCGAGCGCTTTTTGGGCGAAACAGCAGC
CCTTGCGGAAGAACGACCCTTTTCTATACTGGAGACGGGAAGCTGGGAAG
GAGCATCGGCGGTGTGGATCGCTGAGAACCTCTTGAAGAACCCAGCATCT
CTCCTCGTCTGCCTAGATACCTGGGGTGGTGGCGCTAGTTTTGAGAACGA
CGGATGGCACATGGCTGATATTGAGACGGGAAGCTGGGAAGGAGCATCGG
CGGTGTGGATCGCTGAGAACCTCTTGAAGAACCCAGCATCTCTCCTCGTC
TGCCTAGATACCTGGGGTGGTGGCGCTAGTTTTGAGAACGACGGATGGCA
CATGGCTGATATTGAG
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