mRNA_L-elsbetiae_contig12670.2149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12670.2149.1
Unique NamemRNA_L-elsbetiae_contig12670.2149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12670.2149.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.490e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 DPVMTFSGSSDVFFTDGVFETVPGGTCVIQIDDPSTVTIDANEDELTLADTCYVKV 168
            DPVMT + S+ V FT+G +  VP GTC IQ DDPSTVTIDA+EDEL L  TCYVKV
Sbjct:  440 DPVMTITDSTTVSFTNGGYSNVPSGTCTIQADDPSTVTIDADEDELVLEGTCYVKV 495
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BLAST of mRNA_L-elsbetiae_contig12670.2149.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.640e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 DPVMTFSGSSDVFFTDGVFETVPGGTCVIQIDDPSTVTIDANEDELTLADTCYVKV 168
            DPVMT + S+ V FT+G +  VP GTC IQ DDPSTVTIDA+EDEL L  TCYVKV
Sbjct: 1107 DPVMTITDSTTVSFTNGGYSNVPSGTCTIQTDDPSTVTIDADEDELVLEGTCYVKV 1162
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BLAST of mRNA_L-elsbetiae_contig12670.2149.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.500e-12
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 DPVMTFSGSSDVFFTDGVFETVPGGTCVIQIDDPSTVTIDANEDELTLADTCYVKV 168
            DPVMT S S+ V FT+    +V  GTC+IQ DDPSTVTID +EDEL L  TCYVKV
Sbjct:  904 DPVMTISDSTAVSFTNDGSYSVASGTCIIQTDDPSTVTIDPDEDELILEGTCYVKV 959
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BLAST of mRNA_L-elsbetiae_contig12670.2149.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.710e-10
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 DPVMTFSGSSDVFFTDGVFETVPGGTCVIQIDDPSTVTIDANEDELTLADTCYVKV 168
            DP+M  S SS V F +     V    CVIQ DDPSTVTIDA+EDELTL  +CYVKV
Sbjct: 1099 DPIMMVSDSSTVSFNNLGLSLVEADACVIQADDPSTVTIDADEDELTLDGSCYVKV 1154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12670.2149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUI8_ECTSI2.490e-1567.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFA6_9PHAE2.640e-1567.86F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FZZ4_ECTSI2.500e-1264.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL74_9PHAE2.710e-1060.71F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12670contigL-elsbetiae_contig12670:462..1044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size247
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12670.2149.1prot_L-elsbetiae_contig12670.2149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12670 529..1035 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.671909-UTR-L-elsbetiae_contig12670:461..5281622815456.671909-UTR-L-elsbetiae_contig12670:461..528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12670 462..528 -
1691682906.888294-UTR-L-elsbetiae_contig12670:461..5281691682906.888294-UTR-L-elsbetiae_contig12670:461..528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12670 462..528 -
1622815456.7110367-UTR-L-elsbetiae_contig12670:1035..10441622815456.7110367-UTR-L-elsbetiae_contig12670:1035..1044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12670 1036..1044 -
1691682906.9192362-UTR-L-elsbetiae_contig12670:1035..10441691682906.9192362-UTR-L-elsbetiae_contig12670:1035..1044Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12670 1036..1044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.6869466-CDS-L-elsbetiae_contig12670:528..6181622815456.6869466-CDS-L-elsbetiae_contig12670:528..618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 529..618 -
1691682906.8970876-CDS-L-elsbetiae_contig12670:528..6181691682906.8970876-CDS-L-elsbetiae_contig12670:528..618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 529..618 -
1622815456.6975677-CDS-L-elsbetiae_contig12670:954..10351622815456.6975677-CDS-L-elsbetiae_contig12670:954..1035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 955..1035 -
1691682906.9078097-CDS-L-elsbetiae_contig12670:954..10351691682906.9078097-CDS-L-elsbetiae_contig12670:954..1035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12670 955..1035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12670.2149.1

>prot_L-elsbetiae_contig12670.2149.1 ID=prot_L-elsbetiae_contig12670.2149.1|Name=mRNA_L-elsbetiae_contig12670.2149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MTFSGSSDVFFTDGVFETVPGGTCVIQIDDPSTVTIDANEDELTLADTCY
VKVDSA*
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mRNA from alignment at L-elsbetiae_contig12670:462..1044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12670.2149.1 ID=mRNA_L-elsbetiae_contig12670.2149.1|Name=mRNA_L-elsbetiae_contig12670.2149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=583bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:462..1044- (Laminarionema elsbetiae ELsaHSoW15)
GATCCCGTCATGACGTTCTCGGGTAGCTCGGACGTGTTCTTCACCGACGG
CGTCTTCGAAACCGTCCCTGGTGGCACCTGCGTCATCCAGGTACCGGAGG
GTACTGTACAAACCCCGCACTCACACTCACGCAGGAGGAAATAAATCAAT
GTTCATCACCCTCCCACATCAGCCATATTAACGCGCAACGTTCCGGGCTG
GTGGGAGTCTGGCATATATCTATGTTTATGAATCATAATTATTTGTGCAA
GATCGCCCCAGTAACGTTTTGTCCAAGCCGAATCCGATTGTCGGTGCTGC
TGTCCCTTTTATCTTTTGTGGTTTTGTACGAAGTACATAGAGACACCTTA
TGCTGCCGCGACGAAATCATCGTGTCTGAATGCGCGTCTCCTTCTTCGTC
CTCGCCGCCGGCGTCGTTTTTCGCAGATTGACGACCCCAGTACGGTGACG
ATTGACGCCAACGAAGATGAACTCACTCTGGCCGACACGTGCTATGTCAA
AGTTGACAGCGCTTGAGCCTCGGGGGCAGCACAACCCTCTGCGCTGGCTA
CGTCTGCGTGCTGTTCCTAAGGCACCCATGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12670:462..1044-

>mRNA_L-elsbetiae_contig12670.2149.1 ID=mRNA_L-elsbetiae_contig12670.2149.1|Name=mRNA_L-elsbetiae_contig12670.2149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig12670:462..1044- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTTCTCGGGTAGCTCGGACGTGTTCTTCACCGACGGCGTCTTCGA
AACCGTCCCTGGTGGCACCTGCGTCATCCAGATGACGTTCTCGGGTAGCT
CGGACGTGTTCTTCACCGACGGCGTCTTCGAAACCGTCCCTGGTGGCACC
TGCGTCATCCAGATTGACGACCCCAGTACGGTGACGATTGACGCCAACGA
AGATGAACTCACTCTGGCCGACACGTGCTATGTCAAAGTTGACAGCGCTT
GAATTGACGACCCCAGTACGGTGACGATTGACGCCAACGAAGATGAACTC
ACTCTGGCCGACACGTGCTATGTCAAAGTTGACAGCGCTTGA
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