mRNA_L-elsbetiae_contig1265.2135.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1265.2135.1 vs. uniprot
Match: A0A6H5KVW8_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW8_9PHAE) HSP 1 Score: 364 bits (935), Expect = 6.600e-108 Identity = 307/744 (41.26%), Postives = 364/744 (48.92%), Query Frame = 1
Query: 118 GRTCVSCRKSKVKCSKGSPCKRCSRLKLVCIAQVRGRGRPIASGISTTGPK----------KTAKSDGKAGGVGSTAGVGR------DSGSSHPSSXXXXXXXXXXGRGFLARSGVLSPTQPALRAGSEGATTVGGXXXGSIGASGVDARSSFGFSSPTTGIPPPIPATIT----GCSPSLGFNGPVRGLSAADDGGGLIVG---GLGGVGYG---------YQDFDPSSRPFPPHLLSAGRPLPSAAAQHQQQ------GAHGSF--SAAR---TYTHPLLHGGGASDGAPARMASAVGRALPTTSTAMRGSISS-GGSWRAVFHG-----------------------------------------------------------EDIGPXXXXXXXXXXXXXXXX-----------------------RAKGSSSLSSDGGFGGFGAKDLS-WAETVDEHKDAVAAXXXXXX----------------------GEEFLSKSTDEKSRWLMDVEQYAGASGADSEDRSPEANGGVVDPTDTIVTGFWKLFSEQEVHRPKAVLVIRHWALCALERRSTHLMRKTVDMARALCINVAEILNDYGIYAMFHELLREAEAGNTIEPARPVNLGPQEAPPYIQELLTQFAAVSTRVVLRGQSTFFHNEMCTRLFMSTERANEMYSSNRQASYLSDVWATLIHPDDHKSFFDSLSIELFRAPGHKSEFIKI--CKSTRARCYLRLCTF 1896
GRTCVSCRKSKVK LVCIAQVRGRGRP+AS T G K +++K+ G A +A V + + GSSH + G SGVLS P+L G GG + G+SG + SS PP+ A + G SPS + +AA DG G G G GGVG G + F+ SR PP ++ +G P + QH G +G+ S+AR + S G ++A GSISS GGSWR F G E P XXXXXX R KG SSLSSDGGF G G S W E +DEH AV XXXXXX G FLSKS D++ RWL+ VE+ A A+G DS RSP ANGG VDPT+ IV+GFWKLF E +HRPKAVLVIRHWALCAL+RRSTHLMR+TV MARAL INVAEILNDY IYAMFHELLREAEAGNTIEP P LG QE P YIQE+ + FAAVS RVVLRGQS+F HN++C RLF++T ANEMY+ + Q DVWAT IHPDDHK+FFD+LS++LFR PGH+SEF K+ C+ +L L F
Sbjct: 85 GRTCVSCRKSKVKXXXXXXXXXXXXXXLVCIAQVRGRGRPVAS--VTAGKKSLKLVEDGVGRSSKNGGGADDTSRSARVAKSMAAEAEPGSSHANGSGSSSRESS---GASPSSGVLSCAHPSLAGGG------GGIDGATAGSSGSMSTRKVRLSSSVE--VPPLAAVASQISAGTSPSPLY-------AAAVDGEGSPRGDHGGDGGVGVGEGFLLAHHEQRHFEACSRALPPRIMQSGTPTIAPPQQHXXXXXXXXXGVYGALHNSSARPLSAHXXXXXXXXXXXXXXXXXXLSDGGSMTAMNASASPGSISSAGGSWRGEFIGGPGAAAHAVGGLGGMGEISRNDIDVPNGQWEYMNGTEVATTTAKLEGEVNAPTSSSSPAESFAPMPMGHMANSGXXXXXXXXXXXXXXXXEXXXXXXXXXXXXRGKGISSLSSDGGFNGAGKAPASTWVEAMDEHTHAVXXXXXXXXXXXXPTAGERGAXXXXXXXXPDGRIFLSKSEDKQQRWLIAVERGAEATGRDSGGRSPGANGGSVDPTEAIVSGFWKLFREHGIHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTHEANEMYACDNQ-----DVWATCIHPDDHKAFFDNLSMQLFRTPGHQSEFKKVLKCRDRTGVVFLALVHF 803
BLAST of mRNA_L-elsbetiae_contig1265.2135.1 vs. uniprot
Match: D7FVP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP7_ECTSI) HSP 1 Score: 305 bits (781), Expect = 5.240e-86 Identity = 283/758 (37.34%), Postives = 340/758 (44.85%), Query Frame = 1
Query: 1 PKMKKRSR-EGGALKEQEHMNDSLSAPPKESSEEGKDDSGGRTCVSCRKSKVKCSKGSPCKRCSRLKLVCIAQVRGRGRPIASGISTTGPKKTAKSDGKAGGVGSTAGVGRDSGSSHPSSXXXXXXXXXXGRGFLARSG--------------------VLSPTQPALRAGSEGATTVGGXXXGSIGASGVDARSSFGFSSPTTGIPP--PIPATIT-GCSPS------LGFNGPVRGLSAADDGGGLIVGGLGGVGYGY-------QDFDPSSRPFPPHLLSAGRPLPSAAAQHQQ---QGAHGSF---SAARTYTHPL-LHGGGASDGAPARMASAVGRALPT-TSTAMRGSISS-GGSWRAVFHG--------------------EDIGPXXXXXXXXXXXXXXXX--------------------------------------------------------------------RAKGSSSLSSDGGFGGFGAKDLS-WAETVDEHKDAVAAXXXXXXGEEFLSKSTDEKSRWLMDVEQYAGASGADSEDRSPEANGGVVDPTDTIVTGFWKLFSEQEVHRPKAVLVIRHWALCALERRSTHLMRKTVDMARALCINVAEILNDYGIYAMFHELLREAEAGNTIEPARPVNLGPQEAPPYIQELLTQFAAVSTRVVLRGQSTFFHNEMCTRLFMSTERANEMYSSNRQASYLSDVWATLIHPDDHKSFFDSL---SIELFRAPGHKSEFIKICKS 1860
P+MKKR R +GG +KE++ MN S+PP E + D+ G S S C +G C C + KLVCIAQVRGRGRP+AS T KK+ K D G S G G D S G VLS P+L G G + G GS G+ G G S + +PP + + I G SPS L G RG D G GGVG G+ + + SR P ++ +G P + QH QG +G+ SA THPL HGGG + G ++ ++A +GSISS GGSWR F G DI X R K SSLSSDGGF G G S W E +DEH AVAA XXXX AG P+ G VDPT+ IV+GFWKLF E EVHRPKAVLVIRHWALCAL+RRSTHLMR+TV MARAL INVAEILNDY IYAMFHELLREAEAGNTIEP P LG QE P YIQE+ + FAAVS RVVLRGQS+F HN++C RLF++T+ ANEMY+S+ Q DVWAT IHPDDH+ L ++ AP E +++ +S
Sbjct: 31 PRMKKRPRGQGGGVKEEDDMN--YSSPPPEPKDSLSDE--GDQAASSNSSAGACGEGRTCVSCRKSKLVCIAQVRGRGRPVAS---MTAGKKSLKLDEDRVGRSSKNGGGADDTSRSARVAKSVGAEEEPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLSSAHPSLAGGGGGG--IDGSTTGSSGSMGTRT----GQPSSSVEVPPLAAVASQIAAGTSPSPLYAAALDGEGSPRGDHGGDGG--------GGVGEGFLLAPLEQRHLEACSRALSPRIMQSGIPTIAPPQQHXXXXXQGVYGALHNSSARPLSTHPLQFHGGGXXXXXXXXXXXSDGGSMAAMNASAAQGSISSAGGSWRGAFLGGPGPAAHAVGGLGGTGEVSRNDIDTPNGQWEYMNTPSVATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRRGKCISSLSSDGGFNGAGKVAASTWVEAMDEHTHAVAAGXXXX----------------XXXXXPTAGXXXXXXXXXXPD---GSVDPTEAIVSGFWKLFREHEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTQEANEMYASDNQ-----DVWATCIHPDDHQDLLRQLIDAALPYSWAPVRVQESVEVMQS 743 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1265.2135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1265.2135.1 >prot_L-elsbetiae_contig1265.2135.1 ID=prot_L-elsbetiae_contig1265.2135.1|Name=mRNA_L-elsbetiae_contig1265.2135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=645bp MKKRSREGGALKEQEHMNDSLSAPPKESSEEGKDDSGGRTCVSCRKSKVKback to top mRNA from alignment at L-elsbetiae_contig1265:1369..7887+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1265.2135.1 ID=mRNA_L-elsbetiae_contig1265.2135.1|Name=mRNA_L-elsbetiae_contig1265.2135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6519bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:1369..7887+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1265:1369..7887+ >mRNA_L-elsbetiae_contig1265.2135.1 ID=mRNA_L-elsbetiae_contig1265.2135.1|Name=mRNA_L-elsbetiae_contig1265.2135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3870bp|location=Sequence derived from alignment at L-elsbetiae_contig1265:1369..7887+ (Laminarionema elsbetiae ELsaHSoW15)back to top |