mRNA_L-elsbetiae_contig1262.2113.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1262.2113.1
Unique NamemRNA_L-elsbetiae_contig1262.2113.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1262.2113.1 vs. uniprot
Match: A0A6H5K7N3_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7N3_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.570e-74
Identity = 120/170 (70.59%), Postives = 136/170 (80.00%), Query Frame = 1 
Query:    1 KEDDKFGFTGQVLAAVVVTAVAGNILGARRFRKTMTDTVSRNAQRRKAEADRAARAARDXXXXXXXXXXXXPLDGHPLRGRLPKGWEFDDAREAAFAEKRLNSQVVQHLSTLGVKSFVAGSEEVKVAYRGRAMDLHPDRYRRNSAKGNEREFKKVAESYAWLDDNYFRRR 510
            ++ +KF FTGQVL A+VVTA AG+I GARRFRKTMTDTVSRNAQRRKAEA+ AARAARD              DGHP  GR+PKGWEFDD+REAAFAE+RLNSQVVQHLS LGV+SFVAGS+EVK AYRG+AM LHPDR   +S+K + +EF KVA SY WLD NYFRRR
Sbjct:   21 EDKEKFAFTGQVLTAIVVTAAAGSIFGARRFRKTMTDTVSRNAQRRKAEAESAARAARDRAAARANAGGA--ADGHPFPGRIPKGWEFDDSREAAFAEQRLNSQVVQHLSALGVRSFVAGSDEVKAAYRGKAMALHPDRRSADSSKQSGQEFMKVAASYEWLDKNYFRRR 188
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1262.2113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N3_9PHAE1.570e-7470.59J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1262contigL-elsbetiae_contig1262:817..4033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size519
Cds size519
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1262.2113.1prot_L-elsbetiae_contig1262.2113.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1262 817..4033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815453.2762618-CDS-L-elsbetiae_contig1262:816..9111622815453.2762618-CDS-L-elsbetiae_contig1262:816..911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 817..911 +
1691682905.307608-CDS-L-elsbetiae_contig1262:816..9111691682905.307608-CDS-L-elsbetiae_contig1262:816..911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 817..911 +
1622815453.2863085-CDS-L-elsbetiae_contig1262:1646..18631622815453.2863085-CDS-L-elsbetiae_contig1262:1646..1863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 1647..1863 +
1691682905.3165126-CDS-L-elsbetiae_contig1262:1646..18631691682905.3165126-CDS-L-elsbetiae_contig1262:1646..1863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 1647..1863 +
1622815453.2956915-CDS-L-elsbetiae_contig1262:2685..27981622815453.2956915-CDS-L-elsbetiae_contig1262:2685..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 2686..2798 +
1691682905.3253813-CDS-L-elsbetiae_contig1262:2685..27981691682905.3253813-CDS-L-elsbetiae_contig1262:2685..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 2686..2798 +
1622815453.30655-CDS-L-elsbetiae_contig1262:3939..40331622815453.30655-CDS-L-elsbetiae_contig1262:3939..4033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 3940..4033 +
1691682905.3357239-CDS-L-elsbetiae_contig1262:3939..40331691682905.3357239-CDS-L-elsbetiae_contig1262:3939..4033Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1262 3940..4033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1262.2113.1

>prot_L-elsbetiae_contig1262.2113.1 ID=prot_L-elsbetiae_contig1262.2113.1|Name=mRNA_L-elsbetiae_contig1262.2113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
KEDDKFGFTGQVLAAVVVTAVAGNILGARRFRKTMTDTVSRNAQRRKAEA
DRAARAARDRAAAGGGGAAGGPLDGHPLRGRLPKGWEFDDAREAAFAEKR
LNSQVVQHLSTLGVKSFVAGSEEVKVAYRGRAMDLHPDRYRRNSAKGNER
EFKKVAESYAWLDDNYFRRRGR*
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mRNA from alignment at L-elsbetiae_contig1262:817..4033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1262.2113.1 ID=mRNA_L-elsbetiae_contig1262.2113.1|Name=mRNA_L-elsbetiae_contig1262.2113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3217bp|location=Sequence derived from alignment at L-elsbetiae_contig1262:817..4033+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGGACGACAAGTTCGGGTTCACCGGACAGGTGCTGGCCGCCGTCGT
GGTCACCGCCGTCGCTGGAAACATTCTGGGGGCTCGTCGCTTCAGGTGCT
GTTTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCCGCTGCCGCTGCCGCTGCCGGTGCCGGTGCCGGTGCCGCTGC
CGCTATGCAAAATGATCTTGAATACATGATCTTGTATACTTTTATCTGCT
TTATCACCTCCCCCAAAACCAGAAATCAATTGCTTAATAAAATAAATGAA
CTCTTATGAAATACACCATAAGAAGTAGGAGTATTATGTTGTATACATTT
TTTTCTTCACATTTATATCCAGTGCTCGATGAGCTAGCTCCCTGTCACGA
GGACATACATGTATGTAAATCATGGGCTCAAACGAAACACAGCACCCATA
AAATCGTCGATTAGGGCCGCCGCCGCCTGCAGCTACCTACATGCCCCTAT
AGGATTGATCCTCCGTCTCTCGCGTGGCACAATCGAATGAATGGCCCAAT
GAATGGCCCATGTGGTTGACACGCAGCAGGTGTGTGTGTGGAACCCATCA
TCCCTCCCCCCCCCCGCGATGAAAAACCGCCCATGATTTTTTTTTGGAGT
CATGTAAAATATAGGGGAGATGGTAAATTATTCCTATATATTTAGGTGTT
TTTCTACTCGGCCGGCCCATATGACTTCACTACTATATGGAATACCGACT
GAATCTCACGGAGTCCCGTCTCAGATGTGGATCAGGTTCTATTTTTTTAT
TTAACTGTTTTATCCTTCAAAATATGCCAGGAAAACCATGACCGATACGG
TATCCCGAAACGCCCAGCGGCGCAAAGCCGAGGCCGACCGTGCCGCCAGG
GCGGCGAGGGATAGGGCTGCGGCGGGAGGTGGGGGTGCCGCGGGAGGGCC
CCTAGACGGCCACCCTTTGCGCGGGAGGCTGCCCAAGGGGTGGGAGTTTG
ATGATGCCAGGGAGGCCGCGTTCGCGGAGAAGCGGCTCAATTCGCAGGTG
TTTTTTTTTCTTCTTTTTTTTCCGCCCATCATTGGCATATTTGTCGTCTG
CCCTACTGGCCCCCTTCTTTCCACTACGACTAGCTAGACGACTCAACCGG
GGTCACACAGGAGGGGGGGGGTTGGACCCCCTCCTGCGGTGCCTGCCTTA
GATGTTTTCATCGCGAGCAGGGTTCAGCACTCTGTGTAGAAGTATGTCTG
TGGCCTCCGGGTGGTGTGTGTACATACATACTTACTTCCATACACAAATG
TAGCCTTTGAAAATAAATCAAGAAATCAACCATGGACCCTCCCTACCCCC
CCCCCCCCCCCCCCACCCCCCCCCCCCCCCCACAGGGCCCGCGCACGCCG
CCGGCGAAATATTTGTTCTTGTTTCCCNNNNNNNNNNCTTACTTCCATAC
ACAACTGAAGCCTTTGAAAATAAATCAAGAAATCAACCATGGGCCCTCCC
TACCCCCCCCCCCCCACAATACGGAGCCCCCACAGTGCGGAGACGGGATC
ACTGCTGTGACGAATTTTTGGCTTCTTTACGCAGTGATTGATGTGTGTGG
AGGAGCATTTCCGGCCGAGGAGGAAAACGCCTCTTTAAGGTATTTGGTAT
CGTAAGAGCTCAGCACTTCACCTCCTTTGCACCCTGCACAGCTAGCTCTC
TGCCAGGGGTCAAACAGCAAATATATCTATAGCTTTCGCCCGGCCCCAGG
TTAGGGTTAGGGCAACAACGCAACGACCCCAAACAAACCCGGGTAATAAA
TAGCCTTATTTTTCTTGACGCTGACTACTGCTGTGTTGTTGTACATATCA
TACATACATACATGCATAGGTGGTGCAGCACCTGTCGACTCTAGGCGTGA
AGAGCTTCGTGGCGGGGAGCGAAGAAGTCAAGGTTGCTTACCGCGGGAGG
GCCATGGACCTGCACCCGGACAGGTACCGTAGGTGACATAAGATAAGACA
CCCCCTGGGCCGATTTTCAAAGCTCAAATACAGCAAGCAGAGCGTTAGTC
CCGAAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCATTCCGAAAATGT
GGCGTTTGTGGTTAAAATCGTATTCGTTGCGGAGTAGCCAAGCTCTCAAT
ATCGGTCCAGGGGGTGTCTTTCCTTATGTCACCTAAGGTAGGCACGTTGA
TACCATAGGTGACACAAGATACCACACCCCCCTGGACAGATTTTCAAAGC
TCGATTCCTCCTCCTCAGCGAGAAAGAGTGCCAGTGCCAAAAAGGGGGGT
GGCGTTGGAAATATCTAGTCGAGGGATGCCCGAAAATGTGTCGTTTCGGT
GCTGGCGCCTTCTTCGTTACATAAACAGTTTACTGGATAAAGTATGGAAA
CGGTTAATGGGATAAATTATGGAAAATCATAAGGGATAAAGTACGGAAAC
GGTTAATGGGATAAATTATGGAAAATCATAAGGGATAAAGTACGGAAACG
GTTATCTAATGGGATAAAGTATGGAAAACCATGAGGGATAAAGTATGGAA
ACGGTTAATGGGGGTTCGGTTTGGGGTTACGGTTACGGTTGCGGTTACGG
TTACGAAACCCCTGTCTATTATTTACTTAAATACAAGGGCGCTTCGCGAC
GGTCCGCTATCGCGGGCCGCGCTACGCGATCGGCCCGTAGAGACGATGGC
AAGTGTTTGAACTTTGTATGTCCAGGTTGTGGGCGTCTTGTGGAGGTCCG
CCCAGTGCATTTGCCCGCCGCGGGACTGTCATCGATGTTTGCCGGTAATT
GGCCGAGGATTCGTAGACTTGGGAGATGTGACTTTGCGCGTCGCTAGCAC
TGCGCTGCGAGCCTTCCCCACGGCGAGGGCGCACGGGCAGGGCCCTCGCA
GCCGAGGGCTACCGGCAGGCGCAAAGATTTCGGCGAGGCGAGGTCGACGG
ACTGAGAAATCCCCAAAAAGTAGGCTCTAGGCTCCTGAGCGAGAGGCTTA
AGTAATATAGTAGGTAGGTCTAAATTCTTCGCGGCTGGTCCCAGTTATAT
CTGTCTCCCCTGCCCCCCCCCCCCCCCTCTTTTCCTCCTGGCTCTGTCCC
CCTTCCCCTCCTCTCCTCTTCAGAAATTCTGCGAAAGGAAACGAGCGAGA
GTTCAAGAAGGTGGCGGAGTCATACGCATGGTTGGACGACAACTACTTCA
GAAGACGTGGCCGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1262:817..4033+

>mRNA_L-elsbetiae_contig1262.2113.1 ID=mRNA_L-elsbetiae_contig1262.2113.1|Name=mRNA_L-elsbetiae_contig1262.2113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig1262:817..4033+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGGACGACAAGTTCGGGTTCACCGGACAGGTGCTGGCCGCCGTCGT
GGTCACCGCCGTCGCTGGAAACATTCTGGGGGCTCGTCGCTTCAGAAGGA
GGACGACAAGTTCGGGTTCACCGGACAGGTGCTGGCCGCCGTCGTGGTCA
CCGCCGTCGCTGGAAACATTCTGGGGGCTCGTCGCTTCAGGAAAACCATG
ACCGATACGGTATCCCGAAACGCCCAGCGGCGCAAAGCCGAGGCCGACCG
TGCCGCCAGGGCGGCGAGGGATAGGGCTGCGGCGGGAGGTGGGGGTGCCG
CGGGAGGGCCCCTAGACGGCCACCCTTTGCGCGGGAGGCTGCCCAAGGGG
TGGGAGTTTGATGATGCCAGGGAGGCCGCGTTCGCGGAGAAGCGGCTCAA
TTCGCAGGAAAACCATGACCGATACGGTATCCCGAAACGCCCAGCGGCGC
AAAGCCGAGGCCGACCGTGCCGCCAGGGCGGCGAGGGATAGGGCTGCGGC
GGGAGGTGGGGGTGCCGCGGGAGGGCCCCTAGACGGCCACCCTTTGCGCG
GGAGGCTGCCCAAGGGGTGGGAGTTTGATGATGCCAGGGAGGCCGCGTTC
GCGGAGAAGCGGCTCAATTCGCAGGTGGTGCAGCACCTGTCGACTCTAGG
CGTGAAGAGCTTCGTGGCGGGGAGCGAAGAAGTCAAGGTTGCTTACCGCG
GGAGGGCCATGGACCTGCACCCGGACAGGTACCGTAGGTGGTGCAGCACC
TGTCGACTCTAGGCGTGAAGAGCTTCGTGGCGGGGAGCGAAGAAGTCAAG
GTTGCTTACCGCGGGAGGGCCATGGACCTGCACCCGGACAGGTACCGTAG
AAATTCTGCGAAAGGAAACGAGCGAGAGTTCAAGAAGGTGGCGGAGTCAT
ACGCATGGTTGGACGACAACTACTTCAGAAGACGTGGCCGTTGAAAATTC
TGCGAAAGGAAACGAGCGAGAGTTCAAGAAGGTGGCGGAGTCATACGCAT
GGTTGGACGACAACTACTTCAGAAGACGTGGCCGTTGA
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