mRNA_L-elsbetiae_contig12608.2102.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12608.2102.1
Unique NamemRNA_L-elsbetiae_contig12608.2102.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.650e-35
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHGRRLAEPVSMGEWILGDPTATNMD 261
            V  CL DG+L V+LDG E+L APG V+LG +V++SAANLPGACRSFGFEKYWERK LENAR GR L    SMGEWILGDPTATNM+
Sbjct:  402 VSPCLGDGALVVLLDGVESLFAPGTVALGADVEVSAANLPGACRSFGFEKYWERKKLENARAGRLLRTTPSMGEWILGDPTATNMN 487
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.060e-34
Identity = 63/86 (73.26%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHGRRLAEPVSMGEWILGDPTATNMD 261
            V  CLADG+L V+LDG+EAL A G VSLG  V+ISA NLPGACRSFGFEKYWE K LE A  GR+L    SMGEWILGDPTATNMD
Sbjct:  105 VSPCLADGALRVLLDGDEALFAHGTVSLGLGVEISAVNLPGACRSFGFEKYWEHKKLEYATGGRQLRTQPSMGEWILGDPTATNMD 190
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.850e-33
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHGRRLAEPVSMGEWILGDPTATNMD 261
            V  CLADGSL V+L+G+E L APG V+L   V ++A NLPG CRSFGFE YWERK LENARHGR L E  SMG+W+LGDPTATNMD
Sbjct:  174 VSPCLADGSLRVMLNGKEELSAPGSVALADGVIVTAVNLPGECRSFGFEHYWERKKLENARHGRHLGEQ-SMGDWLLGDPTATNMD 258
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.630e-32
Identity = 63/86 (73.26%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHG-RRLAEPVSMGEWILGDPTATNM 258
            V  CLADGSL VVLDG E LLAPG V L  +V +SA N+PGACRSFGFEKYWERK LE A+ G RRL+   SMGEWILGDPTATNM
Sbjct:  865 VSPCLADGSLIVVLDGNETLLAPGAVELASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRRLSVQQSMGEWILGDPTATNM 950
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.590e-32
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHGRRLAEPV---SMGEWILGDPTATNM 258
            V  CLADG+LTV LDG+ ALLAPG+V  G +V ISA NLPGACRSFGFE+YWERK  E AR GRRL       +M +WILGDPTATNM
Sbjct:   82 VSPCLADGALTVQLDGKHALLAPGEVLFGPQVAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSDWILGDPTATNM 169
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.260e-30
Identity = 60/87 (68.97%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHGRR-LAEPVSMGEWILGDPTATNMD 261
            V  CLADGSL VVLDG E L APG V L  +V++SA N+PGACRSFGFEKYWERK LE A+ G R L    SMGEWILGDPTATN++
Sbjct:  683 VSPCLADGSLIVVLDGNETLFAPGAVELAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQAGGRGLLTEQSMGEWILGDPTATNVE 769
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.600e-29
Identity = 58/86 (67.44%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   10 SCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHGRRLAEPVSMGE---WILGDPTATNM 258
            +CLADG+LTV LDG+ ALL+PG+  LG  V ISA NLPGACRSFGFEKYWERK  E    GRRL   + M E   WILGDPTATNM
Sbjct:  226 TCLADGALTVELDGDVALLSPGEAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNM 311
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.580e-28
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 VPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFEKYWERKTLENARHG-RRLA-EPVSMGEWILGDPTATNM 258
            V  CLA+G+L+V LDG+EAL APG V +   +++S  NLPGACRSFGFEKYWERK LE A+ G RRL+ +   MG+WILGDPTATNM
Sbjct:  141 VTPCLANGALSVSLDGKEALSAPGVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNM 227
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BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Match: D8LCQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ0_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  154 YWERKTLENARHGRRLAEPVSMGEWILGDPTATNMD 261
            YWERK LE A HGRRL   +SM EWIL DPTAT+M+
Sbjct: 2839 YWERKKLEYANHGRRLGSKLSMVEWILRDPTATDMN 2874
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12608.2102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KVF3_9PHAE4.650e-3573.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE2.060e-3473.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW46_9PHAE7.850e-3369.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE1.630e-3273.26LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5L2W0_9PHAE4.590e-3268.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRC1_9PHAE1.260e-3068.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE3.600e-2967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE5.580e-2864.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCQ0_ECTSI1.270e-769.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12608contigL-elsbetiae_contig12608:1214..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size262
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12608.2102.1prot_L-elsbetiae_contig12608.2102.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12608 1215..2675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815451.7602816-CDS-L-elsbetiae_contig12608:1214..12381622815451.7602816-CDS-L-elsbetiae_contig12608:1214..1238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12608 1215..1238 -
1691682904.7842638-CDS-L-elsbetiae_contig12608:1214..12381691682904.7842638-CDS-L-elsbetiae_contig12608:1214..1238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12608 1215..1238 -
1622815451.774643-CDS-L-elsbetiae_contig12608:2157..22411622815451.774643-CDS-L-elsbetiae_contig12608:2157..2241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12608 2158..2241 -
1691682904.7959652-CDS-L-elsbetiae_contig12608:2157..22411691682904.7959652-CDS-L-elsbetiae_contig12608:2157..2241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12608 2158..2241 -
1622815451.7876415-CDS-L-elsbetiae_contig12608:2522..26751622815451.7876415-CDS-L-elsbetiae_contig12608:2522..2675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12608 2523..2675 -
1691682904.8046281-CDS-L-elsbetiae_contig12608:2522..26751691682904.8046281-CDS-L-elsbetiae_contig12608:2522..2675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12608 2523..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12608.2102.1

>prot_L-elsbetiae_contig12608.2102.1 ID=prot_L-elsbetiae_contig12608.2102.1|Name=mRNA_L-elsbetiae_contig12608.2102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
EVPSCLADGSLTVVLDGEEALLAPGKVSLGQEVQISAANLPGACRSFGFE
KYWERKTLENARHGRRLAEPVSMGEWILGDPTATNMD
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mRNA from alignment at L-elsbetiae_contig12608:1214..2675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12608.2102.1 ID=mRNA_L-elsbetiae_contig12608.2102.1|Name=mRNA_L-elsbetiae_contig12608.2102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1462bp|location=Sequence derived from alignment at L-elsbetiae_contig12608:1214..2675- (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGCCATCTTGCCTCGCCGACGGCTCGCTGACGGTGGTCCTCGACGG
AGAAGAGGCGCTGCTCGCCCCCGGCAAGGTTTCCCTGGGCCAAGAAGTGC
AAATCTCGGCGGCCAACCTCCCCGGCGCCTGCCGCTCATTTGGCTTTGAA
AAGGTTGGGGCGAGCGCGAGGCTTTCAGAAAGAACCATCTCCCGCCCGTC
TCCGATATATTTAGATCGCATTGCTTACACATTAGACTACCAGGTTTATA
TAGTGGAACCAATGCTTTTTATTTTAGTTTCCAAAACTCGTGTGTTTCCT
GGCTTGATAGTTGTTGTTGCCCTCCTCACGACCCTCTGCCCTGGGCCATG
GTCTGGGTTCATGGGTACCAGCGTCTACTCAACGGCACCGCTGTGCCGCC
CCGAATGTCTCATCCCTACGTCACTGCTCTGCAGTACTGGGAGCGCAAGA
CGCTCGAGAACGCCCGCCACGGTCGCCGCCTGGCCGAGCCAGTGAGCATG
GGCGAGTGGATCCTCGGGGTGAGTGGGATATTGTATATATTGGCACATAC
ATACGATCAGGCATCCGCTACTTCTATATAATAACTGCTGGGAGGGAGGG
CGGGTTGCATGTAGACTATGTACGTACGTACCAAGTACGTACGTACATTT
GTAGGGTTGCTTTTTCAGGAGCAATAACGCTCACAACTTCGACCTGGCCG
TCGACGAGGGAAAGGGGCGGCTGAACCCTTCTCGCGATAAAAACCTTGGG
CGAGCACCGCAGAAGGTGGGAGCGGGGGCCTCGGGGAGAGGAACGCTTCT
GTCTGTGTGACCACAGTTCGGTACTCCGGCAAAAATGCCCTCGTGGCAAG
GAGCCCGTCGAGCCCTGTAAATAATTGTGAAGGTAAAAAAACACAAGACG
CTTGCAGGGCTAGGATACGTATGTAGCAATCGTAAGCTCTCGTGTCGAAC
CGTGGTTGGTTGTAGCGTTAAACTGGCGGCGACCAGAAGGTGGTGCACAT
ATATCCCCCTTTCCCAAACCAGAAAATAAATAAATTGAGCACACCCCAGA
TGTGTAAACACCATACTCCTATATCATCGGAGTACTAAATATATATTTGT
ATGTACAGCCCGAATTGTTTGTGGCGAATCTTTCCCGACATCAGTCCTCA
CGGGGCATACCCCCACCTGCATTCGATGTGATGGTAGGTACAATTCACGT
TGTTCATCAGATGAAGATTCAATTTAGTCATCCACGAGTGAGGTCGGACT
TGTCTCCCGCCGGAGCTTGTTTGCATCTGTTCGACCCAAACGGTCTGTCT
ATTCGTCTTGTTGTTGTCTTGGCATCGTGAAGAATTACTTACATACGCAC
AGGCCTTCCCCGTCGTCAACAGATTGTCACTCAAAACACCTGAGCATTCC
GCGTTTTCTCTCTTCGGGGTTCGCGCCTAAATTAAAGGACCCCACCGCCA
CCAACATGGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12608:1214..2675-

>mRNA_L-elsbetiae_contig12608.2102.1 ID=mRNA_L-elsbetiae_contig12608.2102.1|Name=mRNA_L-elsbetiae_contig12608.2102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig12608:1214..2675- (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGCCATCTTGCCTCGCCGACGGCTCGCTGACGGTGGTCCTCGACGG
AGAAGAGGCGCTGCTCGCCCCCGGCAAGGTTTCCCTGGGCCAAGAAGTGC
AAATCTCGGCGGCCAACCTCCCCGGCGCCTGCCGCTCATTTGGCTTTGAA
AAGGAAGTGCCATCTTGCCTCGCCGACGGCTCGCTGACGGTGGTCCTCGA
CGGAGAAGAGGCGCTGCTCGCCCCCGGCAAGGTTTCCCTGGGCCAAGAAG
TGCAAATCTCGGCGGCCAACCTCCCCGGCGCCTGCCGCTCATTTGGCTTT
GAAAAGTACTGGGAGCGCAAGACGCTCGAGAACGCCCGCCACGGTCGCCG
CCTGGCCGAGCCAGTGAGCATGGGCGAGTGGATCCTCGGGTACTGGGAGC
GCAAGACGCTCGAGAACGCCCGCCACGGTCGCCGCCTGGCCGAGCCAGTG
AGCATGGGCGAGTGGATCCTCGGGGACCCCACCGCCACCAACATGGACGA
CCCCACCGCCACCAACATGGAC
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