mRNA_L-elsbetiae_contig12606.2101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12606.2101.1
Unique NamemRNA_L-elsbetiae_contig12606.2101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12606.2101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12606contigL-elsbetiae_contig12606:376..1869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1019
Cds size1017
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815451.722385-CDS-L-elsbetiae_contig12606:376..6311622815451.722385-CDS-L-elsbetiae_contig12606:376..631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12606 377..631 -
1691682904.7622504-CDS-L-elsbetiae_contig12606:376..6311691682904.7622504-CDS-L-elsbetiae_contig12606:376..631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12606 377..631 -
1622815451.731634-CDS-L-elsbetiae_contig12606:1107..18691622815451.731634-CDS-L-elsbetiae_contig12606:1107..1869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12606 1108..1869 -
1691682904.7744222-CDS-L-elsbetiae_contig12606:1107..18691691682904.7744222-CDS-L-elsbetiae_contig12606:1107..1869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12606 1108..1869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12606.2101.1prot_L-elsbetiae_contig12606.2101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12606 377..1869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12606.2101.1

>prot_L-elsbetiae_contig12606.2101.1 ID=prot_L-elsbetiae_contig12606.2101.1|Name=mRNA_L-elsbetiae_contig12606.2101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
GATGDGFPPDDYITVGAVDDPMGLSGDVPFANSLVDVDVDVPSASDDVSP
PSALVKVKGTLDEDSTPSVEKNASQKTTIDAADAAGELDTSIPSVDDKPA
EEGAETGDKPAEGGAKTDAESAEVEAKKEDDKPAEVEAKKDDKPAEERAK
TDDEPAEEGAKTDVESAEVEVKKDGKPAEKRAKTDDKPAEEGAKADAEAV
ETEAKKDNGKPVEVETKEGDKEPVEVEAKEEDKKPAEVEAQEDDKPPPSK
ENTEDVDETDADTTEPQASTPDVSKPDVSKPDVSKPDVSKPDVSKPDVSK
PDVSKPDVSKPEVSKPDISKPDVSKPDVSKPDVSKPDVS
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mRNA from alignment at L-elsbetiae_contig12606:376..1869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12606.2101.1 ID=mRNA_L-elsbetiae_contig12606.2101.1|Name=mRNA_L-elsbetiae_contig12606.2101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig12606:376..1869- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCGACCGGAGATGGCTTTCCGCCAGACGACTACATTACTGTAGGGGC
GGTGGACGACCCGATGGGCTTGTCTGGTGACGTACCGTTTGCAAATTCCT
TGGTGGATGTGGATGTAGATGTCCCATCAGCCAGCGATGACGTCTCGCCC
CCCTCGGCCTTGGTGAAGGTGAAGGGGACCCTGGACGAAGATTCAACGCC
GTCGGTAGAGAAGAACGCCTCTCAAAAGACCACCATCGACGCAGCGGATG
CAGCTGGAGAGTTGGACACCTCCATACCATCCGTGGATGACAAGCCGGCC
GAAGAGGGAGCTGAGACGGGTGACAAGCCAGCAGAAGGGGGAGCTAAGAC
GGATGCCGAGTCAGCAGAGGTAGAGGCTAAGAAGGAGGATGACAAGCCAG
CTGAGGTAGAGGCTAAGAAGGATGATAAGCCAGCAGAAGAGAGGGCCAAG
ACGGATGATGAGCCGGCAGAGGAGGGGGCTAAGACGGATGTCGAGTCAGC
AGAGGTGGAAGTCAAGAAGGATGGCAAGCCAGCAGAAAAGAGAGCTAAGA
CGGACGACAAGCCGGCAGAGGAGGGAGCTAAGGCGGATGCCGAGGCAGTA
GAGACAGAGGCTAAGAAGGACAACGGGAAGCCAGTAGAGGTGGAAACAAA
GGAGGGTGACAAGGAGCCAGTAGAGGTGGAAGCAAAGGAGGAGGACAAGA
AGCCAGCAGAGGTGGAAGCACAGGAGGATGACAAGCCACCGCCGAGCAAG
GAGAACACGGAGGTAAGCCAGCCTTGCCAGCCCCGTCGATAGCGTCGGTC
GCCGAAATTTGTTGTGCAGTGTCGTAACCTCTGCGCTCTTGCGATAGAAG
TTTGTATTTCGCTGACAAGTTGGCAGTAGATCTTGCCGTCCGCATGTCTT
ACTTGTTCTACGGCCGTGCCAGTCCACTGTCGATTTCGCTTGTGCATGCA
GAATGTCCAGGCCACTGAGCCGACATCAACAGAAACAGATGCCGTCGGCG
AAGAGCCGATTGTCACCGCCGGTGATGCGGGAAATTTTACCGTGGAGGTG
AAGAAGCCCAGGCGCTCCGGCCGCGGCGACGATATGCGCGTGTTCCTGCC
ATTACCTCAACCCAAGAACCGTTTCGCTTCTCTCGTACCCTTTCCAGCCC
GCAAAAATCCTCCCTCAATCTCCCATGTTCATTGTTCAATATTGAACACG
AATCGTTCGCTGGCACTGTTCGTTTCTGGTACGCCCAGGATGTTGATGAG
ACGGATGCCGATACGACGGAACCTCAAGCGAGCACACCCGATGTCAGCAA
GCCGGATGTCAGCAAGCCCGACGTGAGCAAGCCTGATGTCAGCAAGCCGG
ATGTCAGCAAGCCTGATGTCAGCAAGCCGGATGTCAGCAAGCCGGATGTC
AGCAAGCCGGAGGTCAGCAAGCCCGATATCAGCAAGCCGGATGTCAGCAA
GCCCGATGTCAGCAAGCCGGATGTCAGCAAGCCCGATGTCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12606:376..1869-

>mRNA_L-elsbetiae_contig12606.2101.1 ID=mRNA_L-elsbetiae_contig12606.2101.1|Name=mRNA_L-elsbetiae_contig12606.2101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig12606:376..1869- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCGACCGGAGATGGCTTTCCGCCAGACGACTACATTACTGTAGGGGC
GGTGGACGACCCGATGGGCTTGTCTGGTGACGTACCGTTTGCAAATTCCT
TGGTGGATGTGGATGTAGATGTCCCATCAGCCAGCGATGACGTCTCGCCC
CCCTCGGCCTTGGTGAAGGTGAAGGGGACCCTGGACGAAGATTCAACGCC
GTCGGTAGAGAAGAACGCCTCTCAAAAGACCACCATCGACGCAGCGGATG
CAGCTGGAGAGTTGGACACCTCCATACCATCCGTGGATGACAAGCCGGCC
GAAGAGGGAGCTGAGACGGGTGACAAGCCAGCAGAAGGGGGAGCTAAGAC
GGATGCCGAGTCAGCAGAGGTAGAGGCTAAGAAGGAGGATGACAAGCCAG
CTGAGGTAGAGGCTAAGAAGGATGATAAGCCAGCAGAAGAGAGGGCCAAG
ACGGATGATGAGCCGGCAGAGGAGGGGGCTAAGACGGATGTCGAGTCAGC
AGAGGTGGAAGTCAAGAAGGATGGCAAGCCAGCAGAAAAGAGAGCTAAGA
CGGACGACAAGCCGGCAGAGGAGGGAGCTAAGGCGGATGCCGAGGCAGTA
GAGACAGAGGCTAAGAAGGACAACGGGAAGCCAGTAGAGGTGGAAACAAA
GGAGGGTGACAAGGAGCCAGTAGAGGTGGAAGCAAAGGAGGAGGACAAGA
AGCCAGCAGAGGTGGAAGCACAGGAGGATGACAAGCCACCGCCGAGCAAG
GAGAACACGGAGGGAGCGACCGGAGATGGCTTTCCGCCAGACGACTACAT
TACTGTAGGGGCGGTGGACGACCCGATGGGCTTGTCTGGTGACGTACCGT
TTGCAAATTCCTTGGTGGATGTGGATGTAGATGTCCCATCAGCCAGCGAT
GACGTCTCGCCCCCCTCGGCCTTGGTGAAGGTGAAGGGGACCCTGGACGA
AGATTCAACGCCGTCGGTAGAGAAGAACGCCTCTCAAAAGACCACCATCG
ACGCAGCGGATGCAGCTGGAGAGTTGGACACCTCCATACCATCCGTGGAT
GACAAGCCGGCCGAAGAGGGAGCTGAGACGGGTGACAAGCCAGCAGAAGG
GGGAGCTAAGACGGATGCCGAGTCAGCAGAGGTAGAGGCTAAGAAGGAGG
ATGACAAGCCAGCTGAGGTAGAGGCTAAGAAGGATGATAAGCCAGCAGAA
GAGAGGGCCAAGACGGATGATGAGCCGGCAGAGGAGGGGGCTAAGACGGA
TGTCGAGTCAGCAGAGGTGGAAGTCAAGAAGGATGGCAAGCCAGCAGAAA
AGAGAGCTAAGACGGACGACAAGCCGGCAGAGGAGGGAGCTAAGGCGGAT
GCCGAGGCAGTAGAGACAGAGGCTAAGAAGGACAACGGGAAGCCAGTAGA
GGTGGAAACAAAGGAGGGTGACAAGGAGCCAGTAGAGGTGGAAGCAAAGG
AGGAGGACAAGAAGCCAGCAGAGGTGGAAGCACAGGAGGATGACAAGCCA
CCGCCGAGCAAGGAGAACACGGAGGATGTTGATGAGACGGATGCCGATAC
GACGGAACCTCAAGCGAGCACACCCGATGTCAGCAAGCCGGATGTCAGCA
AGCCCGACGTGAGCAAGCCTGATGTCAGCAAGCCGGATGTCAGCAAGCCT
GATGTCAGCAAGCCGGATGTCAGCAAGCCGGATGTCAGCAAGCCGGAGGT
CAGCAAGCCCGATATCAGCAAGCCGGATGTCAGCAAGCCCGATGTCAGCA
AGCCGGATGTCAGCAAGCCCGATGTCAGCGATGTTGATGAGACGGATGCC
GATACGACGGAACCTCAAGCGAGCACACCCGATGTCAGCAAGCCGGATGT
CAGCAAGCCCGACGTGAGCAAGCCTGATGTCAGCAAGCCGGATGTCAGCA
AGCCTGATGTCAGCAAGCCGGATGTCAGCAAGCCGGATGTCAGCAAGCCG
GAGGTCAGCAAGCCCGATATCAGCAAGCCGGATGTCAGCAAGCCCGATGT
CAGCAAGCCGGATGTCAGCAAGCCCGATGTCAGC
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