mRNA_L-elsbetiae_contig1260.2098.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1260.2098.1
Unique NamemRNA_L-elsbetiae_contig1260.2098.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1260.2098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1260contigL-elsbetiae_contig1260:8850..9198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size349
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815451.2364106-CDS-L-elsbetiae_contig1260:8849..91761622815451.2364106-CDS-L-elsbetiae_contig1260:8849..9176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1260 8850..9176 +
1691682904.5759296-CDS-L-elsbetiae_contig1260:8849..91761691682904.5759296-CDS-L-elsbetiae_contig1260:8849..9176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1260 8850..9176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815451.252324-UTR-L-elsbetiae_contig1260:9176..91981622815451.252324-UTR-L-elsbetiae_contig1260:9176..9198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1260 9177..9198 +
1691682904.5852926-UTR-L-elsbetiae_contig1260:9176..91981691682904.5852926-UTR-L-elsbetiae_contig1260:9176..9198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1260 9177..9198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1260.2098.1prot_L-elsbetiae_contig1260.2098.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1260 8850..9176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1260.2098.1

>prot_L-elsbetiae_contig1260.2098.1 ID=prot_L-elsbetiae_contig1260.2098.1|Name=mRNA_L-elsbetiae_contig1260.2098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
PDSLRKKKRKGRCSRRAGQEDTTHTTLYDSVNLAWAGLPGVAVKVWPEHR
VTLGSCTPTLPTPRRRAAPSTMSVLKGVFAQSSESTRIMAHLLQKKEWRT
NAAFFFFF*
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mRNA from alignment at L-elsbetiae_contig1260:8850..9198+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1260.2098.1 ID=mRNA_L-elsbetiae_contig1260.2098.1|Name=mRNA_L-elsbetiae_contig1260.2098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=349bp|location=Sequence derived from alignment at L-elsbetiae_contig1260:8850..9198+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGATTCGTTGCGGAAAAAAAAAAGGAAGGGCAGATGTTCTCGGCGGGC
TGGGCAGGAGGACACTACACACACCACCTTGTACGACTCTGTAAATTTAG
CGTGGGCAGGCTTGCCCGGGGTGGCCGTCAAGGTTTGGCCAGAACATCGC
GTAACTCTAGGGTCTTGCACACCCACGCTCCCGACGCCGCGGCGGCGTGC
CGCCCCATCTACGATGAGCGTATTGAAAGGGGTTTTTGCACAGAGTTCTG
AATCCACGCGTATTATGGCACACCTGCTACAAAAAAAGGAGTGGAGGACG
AACGCTGCTTTTTTTTTTTTTTTTTAACACTCGTGAAACCAACACGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1260:8850..9198+

>mRNA_L-elsbetiae_contig1260.2098.1 ID=mRNA_L-elsbetiae_contig1260.2098.1|Name=mRNA_L-elsbetiae_contig1260.2098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1260:8850..9198+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGATTCGTTGCGGAAAAAAAAAAGGAAGGGCAGATGTTCTCGGCGGGC
TGGGCAGGAGGACACTACACACACCACCTTGTACGACTCTGTAAATTTAG
CGTGGGCAGGCTTGCCCGGGGTGGCCGTCAAGGTTTGGCCAGAACATCGC
GTAACTCTAGGGTCTTGCACACCCACGCTCCCGACGCCGCGGCGGCGTGC
CGCCCCATCTACGATGAGCGTATTGAAAGGGGTTTTTGCACAGAGTTCTG
AATCCACGCGTATTATGGCACACCTGCTACAAAAAAAGGAGTGGAGGACG
AACGCTGCTTTTTTTTTTTTTTTTTAACCCGATTCGTTGCGGAAAAAAAA
AAGGAAGGGCAGATGTTCTCGGCGGGCTGGGCAGGAGGACACTACACACA
CCACCTTGTACGACTCTGTAAATTTAGCGTGGGCAGGCTTGCCCGGGGTG
GCCGTCAAGGTTTGGCCAGAACATCGCGTAACTCTAGGGTCTTGCACACC
CACGCTCCCGACGCCGCGGCGGCGTGCCGCCCCATCTACGATGAGCGTAT
TGAAAGGGGTTTTTGCACAGAGTTCTGAATCCACGCGTATTATGGCACAC
CTGCTACAAAAAAAGGAGTGGAGGACGAACGCTGCTTTTTTTTTTTTTTT
TTAA
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