mRNA_L-elsbetiae_contig12599.2092.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12599.2092.1
Unique NamemRNA_L-elsbetiae_contig12599.2092.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12599.2092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12599contigL-elsbetiae_contig12599:1495..1972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size478
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815450.1979294-CDS-L-elsbetiae_contig12599:1494..18751622815450.1979294-CDS-L-elsbetiae_contig12599:1494..1875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12599 1495..1875 +
1691682904.2274702-CDS-L-elsbetiae_contig12599:1494..18751691682904.2274702-CDS-L-elsbetiae_contig12599:1494..1875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12599 1495..1875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815450.2128496-UTR-L-elsbetiae_contig12599:1875..19721622815450.2128496-UTR-L-elsbetiae_contig12599:1875..1972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12599 1876..1972 +
1691682904.2387137-UTR-L-elsbetiae_contig12599:1875..19721691682904.2387137-UTR-L-elsbetiae_contig12599:1875..1972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12599 1876..1972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12599.2092.1prot_L-elsbetiae_contig12599.2092.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12599 1495..1875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12599.2092.1

>prot_L-elsbetiae_contig12599.2092.1 ID=prot_L-elsbetiae_contig12599.2092.1|Name=mRNA_L-elsbetiae_contig12599.2092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
RFPRTFLVRKINIFQHANTKSKPQTPNPKPLVRTAPSPYSTAKVTHVTTP
PGSTFRAPFLRSEQGFSTKRRIIGYITLDQIFPTPPPLLAGEEIEPSFEN
LSSGWCGILCPLRTVLHVTVPSASSA*
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mRNA from alignment at L-elsbetiae_contig12599:1495..1972+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12599.2092.1 ID=mRNA_L-elsbetiae_contig12599.2092.1|Name=mRNA_L-elsbetiae_contig12599.2092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=478bp|location=Sequence derived from alignment at L-elsbetiae_contig12599:1495..1972+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTTTCCGAGGACTTTTCTGGTAAGGAAAATCAACATTTTTCAACACGC
TAACACAAAGTCCAAACCCCAAACCCCAAACCCCAAACCACTCGTCCGTA
CCGCACCATCACCGTACAGTACAGCGAAGGTGACACATGTTACCACGCCC
CCTGGGTCGACTTTTAGAGCTCCATTCCTCCGTAGCGAACAAGGTTTCAG
CACCAAACGACGCATTATCGGATACATAACCCTCGACCAGATATTTCCGA
CGCCACCCCCCCTCCTTGCTGGGGAGGAAATCGAACCGAGCTTTGAAAAT
CTGTCCAGCGGGTGGTGTGGCATCTTGTGTCCCCTACGTACGGTACTGCA
CGTCACTGTACCTTCTGCCTCGAGCGCATGAGCCTGTGCATGTCCATGCT
CGTCTTCATCTCCATCCTCAGGCTGATCTCGTCCAAGGCCTCAAGACCCC
CCCCTCCCGCCGCCCCCCCTGTGCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12599:1495..1972+

>mRNA_L-elsbetiae_contig12599.2092.1 ID=mRNA_L-elsbetiae_contig12599.2092.1|Name=mRNA_L-elsbetiae_contig12599.2092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig12599:1495..1972+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTTTCCGAGGACTTTTCTGGTAAGGAAAATCAACATTTTTCAACACGC
TAACACAAAGTCCAAACCCCAAACCCCAAACCCCAAACCACTCGTCCGTA
CCGCACCATCACCGTACAGTACAGCGAAGGTGACACATGTTACCACGCCC
CCTGGGTCGACTTTTAGAGCTCCATTCCTCCGTAGCGAACAAGGTTTCAG
CACCAAACGACGCATTATCGGATACATAACCCTCGACCAGATATTTCCGA
CGCCACCCCCCCTCCTTGCTGGGGAGGAAATCGAACCGAGCTTTGAAAAT
CTGTCCAGCGGGTGGTGTGGCATCTTGTGTCCCCTACGTACGGTACTGCA
CGTCACTGTACCTTCTGCCTCGAGCGCATGACGGTTTCCGAGGACTTTTC
TGGTAAGGAAAATCAACATTTTTCAACACGCTAACACAAAGTCCAAACCC
CAAACCCCAAACCCCAAACCACTCGTCCGTACCGCACCATCACCGTACAG
TACAGCGAAGGTGACACATGTTACCACGCCCCCTGGGTCGACTTTTAGAG
CTCCATTCCTCCGTAGCGAACAAGGTTTCAGCACCAAACGACGCATTATC
GGATACATAACCCTCGACCAGATATTTCCGACGCCACCCCCCCTCCTTGC
TGGGGAGGAAATCGAACCGAGCTTTGAAAATCTGTCCAGCGGGTGGTGTG
GCATCTTGTGTCCCCTACGTACGGTACTGCACGTCACTGTACCTTCTGCC
TCGAGCGCATGA
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