mRNA_L-elsbetiae_contig12592.2089.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12592.2089.1
Unique NamemRNA_L-elsbetiae_contig12592.2089.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12592.2089.1 vs. uniprot
Match: D8LTI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.230e-38
Identity = 80/121 (66.12%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:   31 SSSRASPTGRAQPKHPYGRRNTFIGSYTRHGLGYCTAGRDEALTNTRFRDLPSRERRLYTLTLGYGLREDSKS-----VKRVRKPE-MSRGNAVALMARLQEMMLHEGRTVEGIFAALGLD 375
            S+S  S T   + KHPYGRRNT + SYTRHGLG+ TA RDE+LT T+FRDLPSRERRLYTLT+GYGLR D+KS      KR R+   MS+G+AVALMARL EM+ H+GRTVEG+F+ALG+D
Sbjct:   31 STSCTSATELTRQKHPYGRRNTLVRSYTRHGLGFATADRDESLTVTKFRDLPSRERRLYTLTMGYGLRADNKSGFSGDCKRQRQQSGMSKGHAVALMARLHEMLRHDGRTVEGVFSALGVD 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12592.2089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTI5_ECTSI2.230e-3866.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12592contigL-elsbetiae_contig12592:1294..1680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815450.0944524-CDS-L-elsbetiae_contig12592:1293..16801622815450.0944524-CDS-L-elsbetiae_contig12592:1293..1680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12592 1294..1680 +
1691682904.1856658-CDS-L-elsbetiae_contig12592:1293..16801691682904.1856658-CDS-L-elsbetiae_contig12592:1293..1680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12592 1294..1680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12592.2089.1prot_L-elsbetiae_contig12592.2089.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12592 1294..1680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12592.2089.1

>prot_L-elsbetiae_contig12592.2089.1 ID=prot_L-elsbetiae_contig12592.2089.1|Name=mRNA_L-elsbetiae_contig12592.2089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
GRGGVPGPATSSSRASPTGRAQPKHPYGRRNTFIGSYTRHGLGYCTAGRD
EALTNTRFRDLPSRERRLYTLTLGYGLREDSKSVKRVRKPEMSRGNAVAL
MARLQEMMLHEGRTVEGIFAALGLDSRY*
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mRNA from alignment at L-elsbetiae_contig12592:1294..1680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12592.2089.1 ID=mRNA_L-elsbetiae_contig12592.2089.1|Name=mRNA_L-elsbetiae_contig12592.2089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=387bp|location=Sequence derived from alignment at L-elsbetiae_contig12592:1294..1680+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAGAGGAGGGGTTCCAGGGCCTGCCACCTCTTCTTCTCGTGCCTCGCC
AACAGGCCGTGCGCAACCGAAGCACCCGTACGGCCGTCGAAACACGTTCA
TTGGGAGCTACACCCGGCACGGGCTTGGTTACTGTACTGCTGGACGGGAC
GAGGCTTTGACAAATACCAGGTTTCGGGACTTACCATCGCGGGAGCGACG
TTTATACACGTTGACCCTAGGCTATGGTCTCCGGGAAGATAGCAAGAGCG
TCAAGCGTGTGAGGAAGCCGGAGATGAGCCGTGGTAACGCCGTGGCCTTG
ATGGCGAGGCTGCAGGAGATGATGCTGCACGAAGGGAGGACAGTGGAGGG
TATTTTTGCGGCCCTAGGGCTCGACTCAAGGTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12592:1294..1680+

>mRNA_L-elsbetiae_contig12592.2089.1 ID=mRNA_L-elsbetiae_contig12592.2089.1|Name=mRNA_L-elsbetiae_contig12592.2089.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig12592:1294..1680+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAGAGGAGGGGTTCCAGGGCCTGCCACCTCTTCTTCTCGTGCCTCGCC
AACAGGCCGTGCGCAACCGAAGCACCCGTACGGCCGTCGAAACACGTTCA
TTGGGAGCTACACCCGGCACGGGCTTGGTTACTGTACTGCTGGACGGGAC
GAGGCTTTGACAAATACCAGGTTTCGGGACTTACCATCGCGGGAGCGACG
TTTATACACGTTGACCCTAGGCTATGGTCTCCGGGAAGATAGCAAGAGCG
TCAAGCGTGTGAGGAAGCCGGAGATGAGCCGTGGTAACGCCGTGGCCTTG
ATGGCGAGGCTGCAGGAGATGATGCTGCACGAAGGGAGGACAGTGGAGGG
TATTTTTGCGGCCCTAGGGCTCGACTCAAGGTACTGAGGAAGAGGAGGGG
TTCCAGGGCCTGCCACCTCTTCTTCTCGTGCCTCGCCAACAGGCCGTGCG
CAACCGAAGCACCCGTACGGCCGTCGAAACACGTTCATTGGGAGCTACAC
CCGGCACGGGCTTGGTTACTGTACTGCTGGACGGGACGAGGCTTTGACAA
ATACCAGGTTTCGGGACTTACCATCGCGGGAGCGACGTTTATACACGTTG
ACCCTAGGCTATGGTCTCCGGGAAGATAGCAAGAGCGTCAAGCGTGTGAG
GAAGCCGGAGATGAGCCGTGGTAACGCCGTGGCCTTGATGGCGAGGCTGC
AGGAGATGATGCTGCACGAAGGGAGGACAGTGGAGGGTATTTTTGCGGCC
CTAGGGCTCGACTCAAGGTACTGA
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