mRNA_L-elsbetiae_contig1259.2088.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: D7FTE1_ECTSI (Tocopherol phytyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE1_ECTSI) HSP 1 Score: 384 bits (987), Expect = 9.950e-131 Identity = 201/260 (77.31%), Postives = 216/260 (83.08%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEIDK+NKPYLPIPAGNLT R AK TV+LCLLAG LGLAPC+LGSPGLA PP RLKRFPQVAALCILVVRGSIINGGFYSHA+LAGYGLS EKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDV GDR FNIPSFSVVLGE KLF+FARRLLT LLWSTA LGV AK AA+ASLP T+ R ++A AL+ GQ VR RAA +P++P QVY FYM LWK+FY+SYLFLPLAR
Sbjct: 119 NQITDVEIDKINKPYLPIPAGNLTSRAAKLTVTLCLLAGAVLGLAPCSLGSPGLAXXXXXXXXXXXXXXXPPFRLKRFPQVAALCILVVRGSIINGGFYSHAQLAGYGLSREKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVEGDRMFNIPSFSVVLGETKLFAFARRLLTALLWSTAGVLGVGAKAAASASLPLTSGLRGLMSAVALIAGQLVRRRAAGVDPKQPKQVYDFYMDLWKLFYLSYLFLPLAR 378
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A6H5JCM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM7_9PHAE) HSP 1 Score: 383 bits (984), Expect = 9.780e-129 Identity = 205/260 (78.85%), Postives = 217/260 (83.46%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEIDKVNKPYLPIPAGNLT R AK TV+LCLLAG LGLAPC+LGSPGLA LRLKRFPQVAALCILVVRGSIINGGFYSHA+LAGYGLSGEKTALW LTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDR FNIPSFSVVLGE KLF+FARRLLT LLWSTAAALGV AK AA+ASLP T+ V+A AL+ GQ +R RAA +PE+P QVY FYM LWKIFY+SYLFLPLAR
Sbjct: 230 NQITDVEIDKVNKPYLPIPAGNLTSRAAKLTVTLCLLAGAVLGLAPCSLGSPGLAXXXXXXXXXXXXXXXXXLRLKRFPQVAALCILVVRGSIINGGFYSHAQLAGYGLSGEKTALWTLTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRMFNIPSFSVVLGEIKLFAFARRLLTALLWSTAAALGVGAKAAASASLPLTS---GLVSALALITGQLMRRRAAGVDPEQPKQVYDFYMDLWKIFYLSYLFLPLAR 486
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A835ZGZ5_9STRA (Tocopherol phytyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ5_9STRA) HSP 1 Score: 230 bits (586), Expect = 3.200e-70 Identity = 135/275 (49.09%), Postives = 171/275 (62.18%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALG-LAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWA---LT--------LPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAAS---LPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEID+VNKP LPI AG L++R A TV+ CL+ GV LG L P L S L +V S L+G YSLPP+RLKRFP +AA+CIL VRG+++N FY+H L L + LT LP RDA+C L + +F VF VVIAL+KDVPD GD + NI SF+V +G ++F+ A L+ LLW T AA+ +A AA+A+ L W +RA + A G+TV + NP +P QVYKFYMFLW +FY SYL LP R
Sbjct: 95 NQITDVEIDRVNKPELPIAAGRLSMRAAIATVTACLVGGVGLGYLMPAALTSHALQGVIVGSTLLGGMYSLPPIRLKRFPLLAAMCILSVRGAVMNACFYAHFALKSGALXXXXXXXLSPPSLTSGIRDVCLLPLRDARCGLLVGFFAVFGVVIALLKDVPDFKGDAQHNIRSFTVRMGRERVFAAASNLMIALLWGTGAAMAAAAVRAASAAGTPLSWVVGARAALXXVAGAAGRTVLLKRRAVNPTDPKQVYKFYMFLWGLFYTSYLCLPFVR 369
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: B7G488_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G488_PHATC) HSP 1 Score: 230 bits (586), Expect = 8.490e-70 Identity = 131/260 (50.38%), Postives = 169/260 (65.00%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEIDK+NKP+LPI AG L+ + T+ L L + LG A + GL + + S ++GT YSLPP RLKRFP +AA CI+ VRG+IIN F++HAK A +G SG T L L D +C L+ +F VF +VIALMKDVPDVAGDR N+ +FSV LG+ ++F +RRLL+ L W+ G +A +A A L AASR+ A A + G +VR A +PE GQVY +YM LWK+FY+SYL LP AR
Sbjct: 152 NQITDVEIDKINKPFLPIAAGILSKKDGIATILLALFGSLWLGAANPVFSTQGLNVALWGSGILGTMYSLPPFRLKRFPLLAAFCIVAVRGAIINASFFAHAKAAAFGGSGV-TVLNCLA---TDPRCYLSSIFFAVFGIVIALMKDVPDVAGDRNSNVRTFSVRLGQGRIFQASRRLLSGLFWTVGVGFGKAAFQAPTAGL---AASRSLTAVAAFLGGCSVRKDAQGVDPENAGQVYSYYMHLWKLFYLSYLVLPFAR 404
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S3P573_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P573_9STRA) HSP 1 Score: 226 bits (575), Expect = 1.170e-67 Identity = 134/260 (51.54%), Postives = 169/260 (65.00%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEIDKVNKPYLPI AG LT++ A TV L L+A +A+GL + G+ GL + + S ++GT YSL P R KRFP +AA CI+ VRG+IIN FY+HAK + G S T L L D C L+ +F VF +VIALMKDVPDV GDR N+ +FSV LG+A++F+ RRLL+ L W+ +AA A A + S AA R AA + G +VR + NPE+ QVY +YM LWK+FYMSYL LP AR
Sbjct: 195 NQITDVEIDKVNKPYLPIAAGLLTMKDAIVTVVLALVASLAMGL---SYGTQGLNVALWGSAILGTIYSLEPFRFKRFPVLAAFCIVAVRGAIINASFYAHAKASVLG-SPVATVLGCLA---TDRACFLSSLFFGVFGLVIALMKDVPDVVGDRLANVKTFSVRLGQAQVFTGMRRLLSGLFWAVSAAFVNQAVRAFSNSSMGLAACRLVTAAASAWAGWSVRQESQSVNPEDSDQVYSYYMHLWKLFYMSYLVLPFAR 447
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A448ZLS0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLS0_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.180e-66 Identity = 127/262 (48.47%), Postives = 167/262 (63.74%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAAL--GVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQ+TDVEIDK+NKP LPI +G+L+++ A+ V L+ +ALG + L + GL + + +S ++GT YSLPP R KRFP +AA CI+ VRG++IN GF++HA A YG SG + L L D +C L+ YF VF +VIALMKDVPDV GD NI + SV LG + ++ RLLT L W A G A A+AA + RA V A AL+ G +VR A+ +P P +VY FYM LWK+FY+SYLFLP AR
Sbjct: 176 NQVTDVEIDKINKPDLPIASGDLSVKDARLLVVGSLVLSLALGASVPALATEGLGVALGVSAVLGTVYSLPPFRFKRFPLLAAFCIVAVRGAVINAGFFAHAHAAAYGGSGRGSVLGCLA---GDLRCGLSSLYFAVFGLVIALMKDVPDVEGDALSNIRTASVRLGPSAVYQAMHRLLTGLFWGVGLAFFRGALAAPASAA----VRSGRALVGAAALLAGASVRREASPVDPHNPREVYGFYMHLWKLFYLSYLFLPFAR 430
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S2CJS5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJS5_9STRA) HSP 1 Score: 220 bits (561), Expect = 3.220e-66 Identity = 135/272 (49.63%), Postives = 174/272 (63.97%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALG-LAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWAL----------TLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVS-AKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEID+VNKPYLP+ AG+LT+ AK V L LLAG+ALG L PC+ + L +T+VLS LIGT YSL P RLKRFP AALCIL VRG++IN GFY HA + GL + TA AL TLPF AKC LA +F +F VIALMKDVPDV GD+ + I S +V LG ++F+ AR L L+ T AL + A + + R V A +L+ +T+++ + + + + GQVY+FYMF+WK+FY SY+ LP R
Sbjct: 124 NQITDVEIDRVNKPYLPLAAGHLTMPEAKWVVGLSLLAGLALGFLHPCS--TFPLRMTLVLSALIGTFYSLEPFRLKRFPFFAALCILTVRGAVINIGFYGHA-VQNLGL--DVTAQNALASPVIRKILSTLPFESAKCGLATLFFALFGTVIALMKDVPDVVGDKLYGIKSLTVRLGPERVFTIARDALCLLMGVTGGALAATGALLVFSQGVVGRGLLRVIVGASSLLIARTLKTMSCRVDTADQGQVYQFYMFVWKVFYASYILLPFVR 390
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S0ULR7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0ULR7_9STRA) HSP 1 Score: 214 bits (546), Expect = 2.280e-65 Identity = 126/267 (47.19%), Postives = 164/267 (61.42%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSP-----GLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAAL--GVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEIDK+NKP LPI AG+L+++GA TV L L+ + +G+ +GSP GL + + +S ++GT YSLPP RLKRFP +AA CI+ VRG++IN GF++HAK A YG S L P +C L+ YF VF +VIALMKDVPD+ GD NI + SV LG ++ RLLT L W A G A ++ RA V AL+ G +V+ AA +PE P +VY +YM LWK+FY+SY LPLAR
Sbjct: 23 NQITDVEIDKINKPNLPIAAGDLSVKGATITVILSLVLSLVMGV----VGSPAFATEGLNMALGMSAILGTLYSLPPFRLKRFPLLAAFCIVSVRGAVINAGFFAHAKAAAYGSSAGSLLGCLLNNP----RCLLSSLYFAVFGLVIALMKDVPDIKGDELSNIRTVSVRLGAKTVYKMMHRLLTGLFWGAGVAFFRGAIVNNKATMTVRL---GRAVVGISALLAGASVQKEAAPVDPENPKEVYDYYMHLWKLFYLSYFVLPLAR 278
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A7S0KBA4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBA4_9STRA) HSP 1 Score: 213 bits (542), Expect = 3.290e-65 Identity = 121/256 (47.27%), Postives = 162/256 (63.28%), Query Frame = 2
Query: 14 DVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALGVSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
+V D++ KPYLPIPAG L + AK VS+CL G++LGL +G+PGL + + S ++GT YSLPP RLKRFP +AA CI+ VRG+IIN GF++HA+ +G S L L D KC L+ ++ +F +VIALMKDVPDV GD K NI SFSV +G+ K+F ARR L+ LL+ A + + A+ S+ ASR V ++ FG R + NPE +VY +YM+LWKIFY+SY LP AR
Sbjct: 1 EVNFDRLKKPYLPIPAGQLAVPDAKKIVSVCLTVGLSLGL---LMGTPGLNMALWGSAILGTIYSLPPFRLKRFPFLAATCIVAVRGTIINVGFFAHAQKFVFGNSSG-----ILKLFLSDRKCLLSSLFYGIFGIVIALMKDVPDVEGDEKANIRSFSVRVGQKKIFKGARRTLSLLLFGYGAGFLNAGRSASTFSV---LASRMIVGLSSIYFGVKARENSRDVNPESSSEVYDYYMYLWKIFYLSYFSLPFAR 245
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Match: A0A1E7F9X4_9STRA (Homogentisate phytyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9X4_9STRA) HSP 1 Score: 220 bits (560), Expect = 4.610e-65 Identity = 124/264 (46.97%), Postives = 166/264 (62.88%), Query Frame = 2
Query: 2 NQITDVEIDKVNKPYLPIPAGNLTLRGAKTTVSLCLLAGVALGLAPCTLGSPGLALTVVLSVLIGTSYSLPPLRLKRFPQVAALCILVVRGSIINGGFYSHAKLAGYGLSGEKTALWALTLPFRDAKCALALAYFTVFAVVIALMKDVPDVAGDRKFNIPSFSVVLGEAKLFSFARRLLTTLLWSTAAALG----VSAKEAAAASLPWTAASRAFVAAWALVFGQTVRSRAAKTNPEEPGQVYKFYMFLWKIFYMSYLFLPLAR 781
NQITDVEIDK+NKP LPI AG+L+++ A V + LL V LG++ +L + GL + + +S ++GT YSLPP RLKRFP +AA CI+ VRG +IN GF++HAK+A +G SG L D +C L+ YF VF VVIAL+KDVPDV GD NI + +V LG +F RLLTTL W A +++ + ++S R V ALV G +V+ AA +P+ P +VY FYM LWK+FY+SY LP+AR
Sbjct: 223 NQITDVEIDKINKPDLPIAAGDLSMKNATIIVLVSLLLSVVLGVSIPSLTTSGLTMALGVSAVLGTVYSLPPFRLKRFPVLAAFCIVAVRGGVINAGFFAHAKVAAFGGSGS-----ILHYLLTDPRCYLSSLYFAVFGVVIALIKDVPDVKGDNLSNIRTVAVRLGPNSVFRGMHRLLTTLFWGVGIAFFRAAVITSSTSTSSSTMMVRLGRIIVGISALVAGASVQKEAAPVDPDNPTEVYGFYMHLWKLFYLSYFVLPIAR 481 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1259.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1259.2088.1 >prot_L-elsbetiae_contig1259.2088.1 ID=prot_L-elsbetiae_contig1259.2088.1|Name=mRNA_L-elsbetiae_contig1259.2088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp QSDHGRGNRQGQQAVPPDTRRQPDTQGRQDHGLAVPPRRSGSRPRTVHAWback to top mRNA from alignment at L-elsbetiae_contig1259:21208..26977- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1259.2088.1 ID=mRNA_L-elsbetiae_contig1259.2088.1|Name=mRNA_L-elsbetiae_contig1259.2088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5770bp|location=Sequence derived from alignment at L-elsbetiae_contig1259:21208..26977- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1259:21208..26977- >mRNA_L-elsbetiae_contig1259.2088.1 ID=mRNA_L-elsbetiae_contig1259.2088.1|Name=mRNA_L-elsbetiae_contig1259.2088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1259:21208..26977- (Laminarionema elsbetiae ELsaHSoW15)back to top |