mRNA_L-elsbetiae_contig1255.2063.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1255.2063.1
Unique NamemRNA_L-elsbetiae_contig1255.2063.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: D8LFW5_ECTSI (Putative ubiquitin fusion-degradation protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW5_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 4.380e-91
Identity = 154/204 (75.49%), Postives = 168/204 (82.35%), Query Frame = 1
Query:    7 MSSPYVSTRALRLTRPPPGIFCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSA 618
            MS+      +LRLTRPP GI CK+YQCHSMACLDR GLE GDKIIMPQAAF EAHRLRLKLPLLFKLVN D  TRR++G  GP+P  FCGVLEFSAPEDQ         VFLPYW+MQ+LLL EG RVELRSILRPPAGSFV FKPHDE FL +AA+QGPKALME ALRRYSVLSEGATILVQHEG+NF+LDV+E RT DS+ A
Sbjct:    1 MSAAQYHGTSLRLTRPPSGILCKTYQCHSMACLDRPGLELGDKIIMPQAAFHEAHRLRLKLPLLFKLVNTDVGTRRIMGTTGPSPSQFCGVLEFSAPEDQ---------VFLPYWLMQNLLLSEGGRVELRSILRPPAGSFVRFKPHDEAFLGVAAKQGPKALMEFALRRYSVLSEGATILVQHEGDNFFLDVMELRTFDSAPA 195          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A6H5JNY9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY9_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 6.260e-52
Identity = 150/303 (49.50%), Postives = 170/303 (56.11%), Query Frame = 1
Query:   34 ALRLTRPPPGIFCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVDNGSSS-NPPSESADAE--------GRGRHSGSDD-----VGSSDN--------RYGAANXXXXXXXXXXXXGGKGVRLVCLLGDLDLEVEFCSPHAPLPKQGA 876
            +LRLTRPP GIFCK+Y+CHSMACLDR GLEFGDKIIMPQAAF EA   R              +T+R      P    F  VL    P          ++VFLPYW+MQ+LLL EG RVELRSILRPPAGSFV FKPHDE+FL +AA+Q                         HEG+NF+LDVVE RT DSS A    D G  S +P S SA           G G  + +DD     V + D+        R+      XXXXXXXXXX     RLV LLGDLDLEVEFCSPHAPLP   A
Sbjct:   23 SLRLTRPPSGIFCKTYKCHSMACLDRPGLEFGDKIIMPQAAFHEASSRRFA-----------EDTQR------PDAVSFVIVL----PVRPRHRSYHRIQVFLPYWLMQNLLLSEGGRVELRSILRPPAGSFVRFKPHDESFLGVAAKQ-------------------------HEGDNFFLDVVELRTFDSSPATVVSDGGGDSPSPDSPSAALRPPRNGTPVGTGHENDNDDFTRNGVSNHDHHDGNGSPYRHAGRRVRXXXXXXXXXXXXXXXRLVGLLGDLDLEVEFCSPHAPLPPSPA 279          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A329SVD9_9STRA (TRAF-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SVD9_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.740e-33
Identity = 86/200 (43.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   40 RLTRPPPGIFCKSY--QCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633
            R  +PP      S+  QC S+ACLD   LEFGDKI++P         +++  PLLF +V A     +  G       H+C V EFSAP+ Q         VFLPYW+MQ+L + EG  VE+ S++  P G +   +P   +FLDLAA  GPK LME ALRRYSVLS G+TIL+++    +YL VVE +     S  G+VD
Sbjct:   18 RFHKPPSKALLPSHKLQCFSVACLDMPRLEFGDKIVLPPKILLGLQYMKIAPPLLF-MVQAVGLDIQPEGILNACSRHYCSVQEFSAPDGQ---------VFLPYWLMQNLGVAEGGTVEVTSVVNLPRGVYCRLQPEAMSFLDLAAEIGPKLLMETALRRYSVLSVGSTILIEYGSVQYYLRVVELKPASVVSLCGDVD 207          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A067D5J6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D5J6_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 3.320e-33
Identity = 79/199 (39.70%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   79 YQCHSMACL--------------DREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633
            ++C+S+ACL              D   LEFGDK+I+P A  ++   L++ LPL+F++ + +A          P    FC VLEFSAP+ Q         +F PYWMMQ+LL+ EG R++L S    P G +  F+PH   FLDLAA  GPK L+E A+R+YSVLS G TI++++  + +++DVV  +  D     G+VD
Sbjct:   11 FECYSVACLGATRPIRGVLTLVVDMPDLEFGDKVILPPAVLRDLQVLKIPLPLVFRVTSTNA----------PDVRQFCSVLEFSAPDGQ---------MFAPYWMMQNLLVDEGGRLQLESATNIPRGVYCRFQPHVGAFLDLAATLGPKILLESAMRKYSVLSVGETIVIEYGADKYFVDVVHVKPGDVIHLFGDVD 190          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A024UHJ9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHJ9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.280e-33
Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    7 MSSPYVSTRALRLTRPPPGI-----FCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEAR 597
            M+ P  +TR   +TR P        +  S+ C+S+A +D+  LEFGDK+I+P     E  RL++ LPLLFKL ++ A++           C +CGV+EFSAP  Q         ++ PYWMMQ L + EGA V L S L  P G +   +P+    LD+AA  GPK L+E A+RRYS L  G TI++++  E F+L +V+ +
Sbjct:    1 MAPPKRATRRPVVTRAPLASTQIVPYTGSFTCNSVAFIDKPDLEFGDKVILPPNVLVEIQRLKIPLPLLFKLTSSHASSSEC--------CQYCGVMEFSAPVGQ---------MYAPYWMMQQLGVDEGANVHLESALSIPRGLYCQLQPNRLEILDIAASIGPKILLESAMRRYSCLGVGGTIMIEYGDERFFLKLVQVK 185          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A024UI65_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI65_9STRA)

HSP 1 Score: 141 bits (355), Expect = 6.770e-33
Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    7 MSSPYVSTRALRLTRPPPGI-----FCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEAR 597
            M+ P  +TR   +TR P        +  S+ C+S+A +D+  LEFGDK+I+P     E  RL++ LPLLFKL ++ A++           C +CGV+EFSAP  Q         ++ PYWMMQ L + EGA V L S L  P G +   +P+    LD+AA  GPK L+E A+RRYS L  G TI++++  E F+L +V+ +
Sbjct:    1 MAPPKRATRRPVVTRAPLASTQIVPYTGSFTCNSVAFIDKPDLEFGDKVILPPNVLVEIQRLKIPLPLLFKLTSSHASSSEC--------CQYCGVMEFSAPVGQ---------MYAPYWMMQQLGVDEGANVHLESALSIPRGLYCQLQPNRLEILDIAASIGPKILLESAMRRYSCLGVGGTIMIEYGDERFFLKLVQVK 185          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: T0RW44_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RW44_SAPDV)

HSP 1 Score: 132 bits (333), Expect = 3.430e-30
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 1
Query:  118 LEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633
            LEFGDK+I+P A  ++   L++ LPL+F++ +  A   R           FC VLEFSAP+ Q         +F PYWMMQ+LL  EG R++L S    P G +   +PH   FLDLAA  GPK L+E A+R+YSVLS G TI++++  + +++DVV  +  D     G+VD
Sbjct:    4 LEFGDKVILPSAVLRDLQLLKIPLPLVFQVTSTTAPNVR----------QFCSVLEFSAPDGQ---------MFAPYWMMQNLLCDEGGRLQLESATNIPRGVYCRLQPHVSAFLDLAATLGPKILLESAMRKYSVLSVGETIVIEYGADKYFVDVVHVKPGDVIHLFGDVD 156          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A812TUZ3_9DINO (Ufd1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TUZ3_9DINO)

HSP 1 Score: 128 bits (321), Expect = 2.680e-29
Identity = 79/183 (43.17%), Postives = 106/183 (57.92%), Query Frame = 1
Query:   61 GIFCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTR-RVIGPAGP--APC-HFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEAR 597
            G F  S++  S+       LE GDK+I+P AAF+E  RL+L  P++F++ N    +  RV    G   AP   FCGV EFSA + +A         FLP WMMQ+L + +G R    S+   P G+FV F+PH   F+DLAA  GP+ LME A++ YS LS G T++VQ  G  F LDV+E R
Sbjct:   14 GKFEGSFEVRSLKAGGFPQLEAGDKVILPAAAFKEISRLKLPFPMIFRVENERRRSAGRVANRRGATKAPVKQFCGVQEFSAEKGKA---------FLPRWMMQNLKIRDGGRAVFTSVRGMPKGTFVRFQPHTTEFIDLAAALGPRELMEHAMKTYSALSLGETLVVQCSGSMFKLDVLEVR 187          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: V9E2N2_PHYPR (TRAF-type domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E2N2_PHYPR)

HSP 1 Score: 128 bits (321), Expect = 1.160e-28
Identity = 75/184 (40.76%), Postives = 107/184 (58.15%), Query Frame = 1
Query:   82 QCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633
            QC S+ACLD   LEFGDKI++P     +   L++  PL+F +V A     +  G    +   +C V EFS+P+ Q         VF+PYW+MQ+L + EG  V + S++  P G +   +P   +FLDLAA  GPK LME ALRRYSVLS G+TI++++    + + VVE +     S  G+VD
Sbjct:   34 QCFSVACLDMPHLEFGDKIVLPPKILVDLQCLKIPTPLIF-MVRAAGQDNQPEGDLAISS-QYCSVQEFSSPDGQ---------VFVPYWLMQNLGVREGGSVVVTSVVNLPRGVYCRLQPETTSFLDLAAEIGPKLLMETALRRYSVLSTGSTIVIEYGSVRYNVRVVELKPAPVVSLCGDVD 206          
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A6A3Q682_9STRA (C2H2-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q682_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.850e-28
Identity = 73/184 (39.67%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   82 QCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633
            QC S+ACLD   LEFGDK+++P     E     +  P LFK+     ++    G   P    +C V EFSAPE Q         VFLPYW+MQ+L + EG  V + S+   P G +   +P   +FLDLAA+ GPK LME A RRYSVLS  + I++++    +Y+ + E +     S  G+VD
Sbjct:   27 QCFSVACLDMPHLEFGDKVVLPPKILLELKCSNISTPFLFKVRAGGVDSTEGNGIYRP---QYCSVQEFSAPEGQ---------VFLPYWLMQNLHVPEGGSVVVSSVTDLPRGIYCRLQPETTSFLDLAAKIGPKLLMETAFRRYSVLSMNSIIVIEYGNVRYYVRIAELKPASVVSLCGDVD 198          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFW5_ECTSI4.380e-9175.49Putative ubiquitin fusion-degradation protein n=1 ... [more]
A0A6H5JNY9_9PHAE6.260e-5249.50RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A329SVD9_9STRA1.740e-3343.00TRAF-type domain-containing protein n=1 Tax=Phytop... [more]
A0A067D5J6_SAPPC3.320e-3339.70Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024UHJ9_9STRA6.280e-3339.60Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A024UI65_9STRA6.770e-3339.60Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
T0RW44_SAPDV3.430e-3041.86Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A812TUZ3_9DINO2.680e-2943.17Ufd1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
V9E2N2_PHYPR1.160e-2840.76TRAF-type domain-containing protein n=8 Tax=Phytop... [more]
A0A6A3Q682_9STRA7.850e-2839.67C2H2-type domain-containing protein n=3 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1255contigL-elsbetiae_contig1255:564..3285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue6e-81
Seed eggNOG ortholog2880.D8LFW5
KEGG koko:K14016
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1816@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-05_005270.1
Exons5
Model size1236
Cds size1230
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1255.2063.1prot_L-elsbetiae_contig1255.2063.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1255 564..3279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815447.7130098-CDS-L-elsbetiae_contig1255:563..12441622815447.7130098-CDS-L-elsbetiae_contig1255:563..1244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 564..1244 -
1691682902.8341825-CDS-L-elsbetiae_contig1255:563..12441691682902.8341825-CDS-L-elsbetiae_contig1255:563..1244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 564..1244 -
1622815447.7237642-CDS-L-elsbetiae_contig1255:1590..16651622815447.7237642-CDS-L-elsbetiae_contig1255:1590..1665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 1591..1665 -
1691682902.844651-CDS-L-elsbetiae_contig1255:1590..16651691682902.844651-CDS-L-elsbetiae_contig1255:1590..1665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 1591..1665 -
1622815447.733188-CDS-L-elsbetiae_contig1255:2163..23101622815447.733188-CDS-L-elsbetiae_contig1255:2163..2310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 2164..2310 -
1691682902.852631-CDS-L-elsbetiae_contig1255:2163..23101691682902.852631-CDS-L-elsbetiae_contig1255:2163..2310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 2164..2310 -
1622815447.7427483-CDS-L-elsbetiae_contig1255:2671..28391622815447.7427483-CDS-L-elsbetiae_contig1255:2671..2839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 2672..2839 -
1691682902.8626735-CDS-L-elsbetiae_contig1255:2671..28391691682902.8626735-CDS-L-elsbetiae_contig1255:2671..2839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 2672..2839 -
1622815447.7520046-CDS-L-elsbetiae_contig1255:3120..32791622815447.7520046-CDS-L-elsbetiae_contig1255:3120..3279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 3121..3279 -
1691682902.8713493-CDS-L-elsbetiae_contig1255:3120..32791691682902.8713493-CDS-L-elsbetiae_contig1255:3120..3279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1255 3121..3279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815447.7614427-UTR-L-elsbetiae_contig1255:3279..32851622815447.7614427-UTR-L-elsbetiae_contig1255:3279..3285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1255 3280..3285 -
1691682902.8813238-UTR-L-elsbetiae_contig1255:3279..32851691682902.8813238-UTR-L-elsbetiae_contig1255:3279..3285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1255 3280..3285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1255.2063.1

>prot_L-elsbetiae_contig1255.2063.1 ID=prot_L-elsbetiae_contig1255.2063.1|Name=mRNA_L-elsbetiae_contig1255.2063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=410bp
MSSPYVSTRALRLTRPPPGIFCKSYQCHSMACLDREGLEFGDKIIMPQAA
FQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQ
ARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDET
FLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLD
SSSAAGNVDNGSSSNPPSESADAEGRGRHSGSDDVGSSDNRYGAANNAGG
GGGGGGAAGGKGVRLVCLLGDLDLEVEFCSPHAPLPKQGAAEHPSECRRA
ERRRDGLPGHPVDDRDRNPNRQGSRGPMDEISPSPSPPQSSPCTIAGLQA
SPPPSSVFDGAAGPGGGRPEPRGQEEPRWTLPAPARAKRSCDGGASASGL
GPETPRWRMG
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mRNA from alignment at L-elsbetiae_contig1255:564..3285-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1255.2063.1 ID=mRNA_L-elsbetiae_contig1255.2063.1|Name=mRNA_L-elsbetiae_contig1255.2063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2722bp|location=Sequence derived from alignment at L-elsbetiae_contig1255:564..3285- (Laminarionema elsbetiae ELsaHSoW15)
GGGACAATGTCGAGCCCATATGTAAGTACTCGTGCCCTGCGGCTTACCAG ACCGCCGCCTGGGATCTTCTGCAAGTCGTACCAGTGCCACTCTATGGCAT GCCTTGATCGGGAGGGCCTCGAGTTCGGAGACAAGATCATCATGCCACAA GCAGCTTTTCAAGAGGTTCGTATTCTGTAATCTACCTTATAGGCTACTGA AGTATTGCCTGAATAAGGGATTGCCACGCAGAACGAGACTACGTTTTGCT GATGGGAATAGTTGGTGGGCCCTGGCTTGGAATGATGTGGTTGATCAGGG GGTGCCGAACAGGACAACACATTTAAGTATGTACACACCAGCCGATGTTT GACGTGTATGGAAGTTTCTGCGGAACGCCTTACATCTTTTTTTGTTTCCC TTACGCCGGAACCTGCCATGCATGTCCTTGTGTGCTGCCCCTCTAGGCAC ATCGATTGCGACTGAAGCTACCGCTGCTGTTCAAGTTGGTCAATGCTGAT GCCAACACCAGGAGGGTTATAGGCCCGGCGGGACCTGCCCCTTGTCACTT CTGCGGTGTGCTTGAATTTAGCGCGCCGGAAGATCAGGCACGAGCGCAGA CCATGTTACTCAAAGTCGAGGACAATCAAGTATTTTTGAGTCTATCTTTC AAAAATCACACAAAATACACTCTTTCCAGTTTCAAATATCATGCGTGAAT TGCCACCTCGTGTCTATCCAACACCGGTGTAAGCTTCTTTTGGTATTAAG TCCTTCAGACGACGATGCTGGTAGTTTTCATGCTTGTTGCAGGAGAACCC AAAATAACAGGTTGCTCGGAACTACGCCTTGACCTGCAGAGGCCTTCGCC AGGATGTACGTTGAAGATGAACATCGTATATCTACATACTGAATGCTGCG ATATTTCCTCCTGGAGTGGTATCTTGGATTACATAACCCTCCGGTCTTCC TGCCATCGTATTCCCCCCCCACCAGGTGTTTCTGCCCTACTGGATGATGC AAAGCTTGCTCTTGGTAGAGGGCGCGCGAGTGGAGCTCCGAAGTATCCTT CGTCCACCAGCAGGGTCTTTCGTGCTGTTCAAGCCCCACGATGAGACGTT CCTCGACTTAGCGGCGCGGCAGGTAGAGTTCAAAGTTCAGATCAACGGAG AGTATGAGGCAACATACACGAAAACAAAACCGCCAAAAAGGGCGCTTCAG ACCGATTGAATTTTTGCGTTAACGTCATTCAGGGTTTGTTTTACGAAAGA AAAGGTATTCTTGAGCGTACGGAGAGATCGAGAGAACACCTCTTCGAACG TAGGAAATAATGATATCTTCGTTGCTTTCCTTTCGTTGCGAACCGAGCCG AATACATGAGGCACAGGGCTTTACGACAACCCGAACAATTTTTCCAAGAG GGGGTAGCAACGGAAACTATTTGCGCTTCGCTGCTGATGTTCTACACATA TTTAGCGACAGATGTTGAAGCTCTTCTGTTTGCCCCAGCAAGTTGTTTTT TCGCCGGCAGGTAGCAACAGCCTACAGCCCGAACTAACAGCAGCAGATTG CCCAGCACCTTCAGTGTGTATGGACAACTGCCGAACGAACGACACCTATT GTGCGCTTTGGTTTCGACAGGGACCAAAGGCATTGATGGAAGGTGCTCTC CGTCGATACTCTGTTCTTTCTGAAGGAGCCACCATCCTTGTGCAGGTAAG GGATCAGAAACTTGCGGGCAGAGAGTGCCAGAGAAGGGATACTCCTCTTC GTAAAATGCCACGCTCCTAGAATGGCAGGTCGTACGAATACGCTTAAGTT TCACCGCTTGCTCTTGTGCTCCCGCATTTCCCCACAGTTTGATGGATGAA CCTGTCAATCCGACGCCGAGAACGCTGTCCGGTGGCTAGAGCTGCTCAAA AACTGTGCAGCATCAGTGGGAAAAAAGCACAACCTCTAATTCCACGCGTT GAACTCCGCCGCGAGCCGACTCTCCGTGCTCTCTCCCCGTCTCATATTTC CGGTTTGCTCAACGATTTGACGGCAAACCACACCAACGCAGCACGAGGGC GAAAACTTCTATCTCGACGTTGTGGAGGCCAGGACGCTCGACTCTTCCTC GGCCGCCGGCAACGTCGACAACGGGTCCTCCTCGAACCCGCCGTCCGAGT CCGCCGACGCCGAGGGACGCGGAAGACATAGCGGAAGCGACGACGTCGGC AGCAGCGATAACCGTTACGGCGCCGCCAACAACGCCGGCGGCGGCGGCGG CGGCGGCGGTGCCGCTGGGGGGAAAGGGGTGCGGCTCGTTTGTCTACTCG GGGACCTCGATCTCGAGGTGGAATTCTGTTCCCCCCATGCGCCGTTACCG AAACAGGGTGCGGCGGAACATCCCTCGGAATGCCGCCGCGCGGAGCGTCG CCGGGACGGCCTCCCGGGGCATCCTGTTGATGACCGAGATCGAAACCCGA ACCGTCAGGGATCGCGGGGCCCGATGGACGAGATATCGCCGTCGCCCAGC CCCCCGCAGTCGTCACCGTGTACCATCGCCGGACTGCAAGCATCACCCCC ACCATCGTCTGTATTTGATGGCGCCGCTGGTCCCGGTGGAGGCCGACCCG AGCCAAGAGGGCAAGAAGAACCGCGTTGGACCCTGCCAGCACCCGCAAGG GCGAAACGGAGTTGTGATGGCGGCGCTTCGGCGTCGGGGCTGGGGCCGGA GACACCGCGATGGAGAATGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1255:564..3285-

>mRNA_L-elsbetiae_contig1255.2063.1 ID=mRNA_L-elsbetiae_contig1255.2063.1|Name=mRNA_L-elsbetiae_contig1255.2063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2460bp|location=Sequence derived from alignment at L-elsbetiae_contig1255:564..3285- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGCCCATATGTAAGTACTCGTGCCCTGCGGCTTACCAGACCGCC
GCCTGGGATCTTCTGCAAGTCGTACCAGTGCCACTCTATGGCATGCCTTG
ATCGGGAGGGCCTCGAGTTCGGAGACAAGATCATCATGCCACAAGCAGCT
TTTCAAGAGATGTCGAGCCCATATGTAAGTACTCGTGCCCTGCGGCTTAC
CAGACCGCCGCCTGGGATCTTCTGCAAGTCGTACCAGTGCCACTCTATGG
CATGCCTTGATCGGGAGGGCCTCGAGTTCGGAGACAAGATCATCATGCCA
CAAGCAGCTTTTCAAGAGGCACATCGATTGCGACTGAAGCTACCGCTGCT
GTTCAAGTTGGTCAATGCTGATGCCAACACCAGGAGGGTTATAGGCCCGG
CGGGACCTGCCCCTTGTCACTTCTGCGGTGTGCTTGAATTTAGCGCGCCG
GAAGATCAGGCACGAGCGCAGACCATGTTACTCAAAGCACATCGATTGCG
ACTGAAGCTACCGCTGCTGTTCAAGTTGGTCAATGCTGATGCCAACACCA
GGAGGGTTATAGGCCCGGCGGGACCTGCCCCTTGTCACTTCTGCGGTGTG
CTTGAATTTAGCGCGCCGGAAGATCAGGCACGAGCGCAGACCATGTTACT
CAAAGTGTTTCTGCCCTACTGGATGATGCAAAGCTTGCTCTTGGTAGAGG
GCGCGCGAGTGGAGCTCCGAAGTATCCTTCGTCCACCAGCAGGGTCTTTC
GTGCTGTTCAAGCCCCACGATGAGACGTTCCTCGACTTAGCGGCGCGGCA
GGTGTTTCTGCCCTACTGGATGATGCAAAGCTTGCTCTTGGTAGAGGGCG
CGCGAGTGGAGCTCCGAAGTATCCTTCGTCCACCAGCAGGGTCTTTCGTG
CTGTTCAAGCCCCACGATGAGACGTTCCTCGACTTAGCGGCGCGGCAGGG
ACCAAAGGCATTGATGGAAGGTGCTCTCCGTCGATACTCTGTTCTTTCTG
AAGGAGCCACCATCCTTGTGCAGGGACCAAAGGCATTGATGGAAGGTGCT
CTCCGTCGATACTCTGTTCTTTCTGAAGGAGCCACCATCCTTGTGCAGCA
CGAGGGCGAAAACTTCTATCTCGACGTTGTGGAGGCCAGGACGCTCGACT
CTTCCTCGGCCGCCGGCAACGTCGACAACGGGTCCTCCTCGAACCCGCCG
TCCGAGTCCGCCGACGCCGAGGGACGCGGAAGACATAGCGGAAGCGACGA
CGTCGGCAGCAGCGATAACCGTTACGGCGCCGCCAACAACGCCGGCGGCG
GCGGCGGCGGCGGCGGTGCCGCTGGGGGGAAAGGGGTGCGGCTCGTTTGT
CTACTCGGGGACCTCGATCTCGAGGTGGAATTCTGTTCCCCCCATGCGCC
GTTACCGAAACAGGGTGCGGCGGAACATCCCTCGGAATGCCGCCGCGCGG
AGCGTCGCCGGGACGGCCTCCCGGGGCATCCTGTTGATGACCGAGATCGA
AACCCGAACCGTCAGGGATCGCGGGGCCCGATGGACGAGATATCGCCGTC
GCCCAGCCCCCCGCAGTCGTCACCGTGTACCATCGCCGGACTGCAAGCAT
CACCCCCACCATCGTCTGTATTTGATGGCGCCGCTGGTCCCGGTGGAGGC
CGACCCGAGCCAAGAGGGCAAGAAGAACCGCGTTGGACCCTGCCAGCACC
CGCAAGGGCGAAACGGAGTTGTGATGGCGGCGCTTCGGCGTCGGGGCTGG
GGCCGGAGACACCGCGATGGAGAATGGGTCACGAGGGCGAAAACTTCTAT
CTCGACGTTGTGGAGGCCAGGACGCTCGACTCTTCCTCGGCCGCCGGCAA
CGTCGACAACGGGTCCTCCTCGAACCCGCCGTCCGAGTCCGCCGACGCCG
AGGGACGCGGAAGACATAGCGGAAGCGACGACGTCGGCAGCAGCGATAAC
CGTTACGGCGCCGCCAACAACGCCGGCGGCGGCGGCGGCGGCGGCGGTGC
CGCTGGGGGGAAAGGGGTGCGGCTCGTTTGTCTACTCGGGGACCTCGATC
TCGAGGTGGAATTCTGTTCCCCCCATGCGCCGTTACCGAAACAGGGTGCG
GCGGAACATCCCTCGGAATGCCGCCGCGCGGAGCGTCGCCGGGACGGCCT
CCCGGGGCATCCTGTTGATGACCGAGATCGAAACCCGAACCGTCAGGGAT
CGCGGGGCCCGATGGACGAGATATCGCCGTCGCCCAGCCCCCCGCAGTCG
TCACCGTGTACCATCGCCGGACTGCAAGCATCACCCCCACCATCGTCTGT
ATTTGATGGCGCCGCTGGTCCCGGTGGAGGCCGACCCGAGCCAAGAGGGC
AAGAAGAACCGCGTTGGACCCTGCCAGCACCCGCAAGGGCGAAACGGAGT
TGTGATGGCGGCGCTTCGGCGTCGGGGCTGGGGCCGGAGACACCGCGATG
GAGAATGGGT
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