mRNA_L-elsbetiae_contig1255.2063.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: D8LFW5_ECTSI (Putative ubiquitin fusion-degradation protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW5_ECTSI) HSP 1 Score: 305 bits (781), Expect = 4.380e-91 Identity = 154/204 (75.49%), Postives = 168/204 (82.35%), Query Frame = 1 Query: 7 MSSPYVSTRALRLTRPPPGIFCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSA 618 MS+ +LRLTRPP GI CK+YQCHSMACLDR GLE GDKIIMPQAAF EAHRLRLKLPLLFKLVN D TRR++G GP+P FCGVLEFSAPEDQ VFLPYW+MQ+LLL EG RVELRSILRPPAGSFV FKPHDE FL +AA+QGPKALME ALRRYSVLSEGATILVQHEG+NF+LDV+E RT DS+ A Sbjct: 1 MSAAQYHGTSLRLTRPPSGILCKTYQCHSMACLDRPGLELGDKIIMPQAAFHEAHRLRLKLPLLFKLVNTDVGTRRIMGTTGPSPSQFCGVLEFSAPEDQ---------VFLPYWLMQNLLLSEGGRVELRSILRPPAGSFVRFKPHDEAFLGVAAKQGPKALMEFALRRYSVLSEGATILVQHEGDNFFLDVMELRTFDSAPA 195
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A6H5JNY9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY9_9PHAE) HSP 1 Score: 197 bits (501), Expect = 6.260e-52 Identity = 150/303 (49.50%), Postives = 170/303 (56.11%), Query Frame = 1 Query: 34 ALRLTRPPPGIFCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVDNGSSS-NPPSESADAE--------GRGRHSGSDD-----VGSSDN--------RYGAANXXXXXXXXXXXXGGKGVRLVCLLGDLDLEVEFCSPHAPLPKQGA 876 +LRLTRPP GIFCK+Y+CHSMACLDR GLEFGDKIIMPQAAF EA R +T+R P F VL P ++VFLPYW+MQ+LLL EG RVELRSILRPPAGSFV FKPHDE+FL +AA+Q HEG+NF+LDVVE RT DSS A D G S +P S SA G G + +DD V + D+ R+ XXXXXXXXXX RLV LLGDLDLEVEFCSPHAPLP A Sbjct: 23 SLRLTRPPSGIFCKTYKCHSMACLDRPGLEFGDKIIMPQAAFHEASSRRFA-----------EDTQR------PDAVSFVIVL----PVRPRHRSYHRIQVFLPYWLMQNLLLSEGGRVELRSILRPPAGSFVRFKPHDESFLGVAAKQ-------------------------HEGDNFFLDVVELRTFDSSPATVVSDGGGDSPSPDSPSAALRPPRNGTPVGTGHENDNDDFTRNGVSNHDHHDGNGSPYRHAGRRVRXXXXXXXXXXXXXXXRLVGLLGDLDLEVEFCSPHAPLPPSPA 279
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A329SVD9_9STRA (TRAF-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SVD9_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.740e-33 Identity = 86/200 (43.00%), Postives = 114/200 (57.00%), Query Frame = 1 Query: 40 RLTRPPPGIFCKSY--QCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633 R +PP S+ QC S+ACLD LEFGDKI++P +++ PLLF +V A + G H+C V EFSAP+ Q VFLPYW+MQ+L + EG VE+ S++ P G + +P +FLDLAA GPK LME ALRRYSVLS G+TIL+++ +YL VVE + S G+VD Sbjct: 18 RFHKPPSKALLPSHKLQCFSVACLDMPRLEFGDKIVLPPKILLGLQYMKIAPPLLF-MVQAVGLDIQPEGILNACSRHYCSVQEFSAPDGQ---------VFLPYWLMQNLGVAEGGTVEVTSVVNLPRGVYCRLQPEAMSFLDLAAEIGPKLLMETALRRYSVLSVGSTILIEYGSVQYYLRVVELKPASVVSLCGDVD 207
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A067D5J6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D5J6_SAPPC) HSP 1 Score: 141 bits (356), Expect = 3.320e-33 Identity = 79/199 (39.70%), Postives = 115/199 (57.79%), Query Frame = 1 Query: 79 YQCHSMACL--------------DREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633 ++C+S+ACL D LEFGDK+I+P A ++ L++ LPL+F++ + +A P FC VLEFSAP+ Q +F PYWMMQ+LL+ EG R++L S P G + F+PH FLDLAA GPK L+E A+R+YSVLS G TI++++ + +++DVV + D G+VD Sbjct: 11 FECYSVACLGATRPIRGVLTLVVDMPDLEFGDKVILPPAVLRDLQVLKIPLPLVFRVTSTNA----------PDVRQFCSVLEFSAPDGQ---------MFAPYWMMQNLLVDEGGRLQLESATNIPRGVYCRFQPHVGAFLDLAATLGPKILLESAMRKYSVLSVGETIVIEYGADKYFVDVVHVKPGDVIHLFGDVD 190
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A024UHJ9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHJ9_9STRA) HSP 1 Score: 141 bits (355), Expect = 6.280e-33 Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 1 Query: 7 MSSPYVSTRALRLTRPPPGI-----FCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEAR 597 M+ P +TR +TR P + S+ C+S+A +D+ LEFGDK+I+P E RL++ LPLLFKL ++ A++ C +CGV+EFSAP Q ++ PYWMMQ L + EGA V L S L P G + +P+ LD+AA GPK L+E A+RRYS L G TI++++ E F+L +V+ + Sbjct: 1 MAPPKRATRRPVVTRAPLASTQIVPYTGSFTCNSVAFIDKPDLEFGDKVILPPNVLVEIQRLKIPLPLLFKLTSSHASSSEC--------CQYCGVMEFSAPVGQ---------MYAPYWMMQQLGVDEGANVHLESALSIPRGLYCQLQPNRLEILDIAASIGPKILLESAMRRYSCLGVGGTIMIEYGDERFFLKLVQVK 185
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A024UI65_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI65_9STRA) HSP 1 Score: 141 bits (355), Expect = 6.770e-33 Identity = 80/202 (39.60%), Postives = 116/202 (57.43%), Query Frame = 1 Query: 7 MSSPYVSTRALRLTRPPPGI-----FCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEAR 597 M+ P +TR +TR P + S+ C+S+A +D+ LEFGDK+I+P E RL++ LPLLFKL ++ A++ C +CGV+EFSAP Q ++ PYWMMQ L + EGA V L S L P G + +P+ LD+AA GPK L+E A+RRYS L G TI++++ E F+L +V+ + Sbjct: 1 MAPPKRATRRPVVTRAPLASTQIVPYTGSFTCNSVAFIDKPDLEFGDKVILPPNVLVEIQRLKIPLPLLFKLTSSHASSSEC--------CQYCGVMEFSAPVGQ---------MYAPYWMMQQLGVDEGANVHLESALSIPRGLYCQLQPNRLEILDIAASIGPKILLESAMRRYSCLGVGGTIMIEYGDERFFLKLVQVK 185
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: T0RW44_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RW44_SAPDV) HSP 1 Score: 132 bits (333), Expect = 3.430e-30 Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 1 Query: 118 LEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633 LEFGDK+I+P A ++ L++ LPL+F++ + A R FC VLEFSAP+ Q +F PYWMMQ+LL EG R++L S P G + +PH FLDLAA GPK L+E A+R+YSVLS G TI++++ + +++DVV + D G+VD Sbjct: 4 LEFGDKVILPSAVLRDLQLLKIPLPLVFQVTSTTAPNVR----------QFCSVLEFSAPDGQ---------MFAPYWMMQNLLCDEGGRLQLESATNIPRGVYCRLQPHVSAFLDLAATLGPKILLESAMRKYSVLSVGETIVIEYGADKYFVDVVHVKPGDVIHLFGDVD 156
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A812TUZ3_9DINO (Ufd1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TUZ3_9DINO) HSP 1 Score: 128 bits (321), Expect = 2.680e-29 Identity = 79/183 (43.17%), Postives = 106/183 (57.92%), Query Frame = 1 Query: 61 GIFCKSYQCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTR-RVIGPAGP--APC-HFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEAR 597 G F S++ S+ LE GDK+I+P AAF+E RL+L P++F++ N + RV G AP FCGV EFSA + +A FLP WMMQ+L + +G R S+ P G+FV F+PH F+DLAA GP+ LME A++ YS LS G T++VQ G F LDV+E R Sbjct: 14 GKFEGSFEVRSLKAGGFPQLEAGDKVILPAAAFKEISRLKLPFPMIFRVENERRRSAGRVANRRGATKAPVKQFCGVQEFSAEKGKA---------FLPRWMMQNLKIRDGGRAVFTSVRGMPKGTFVRFQPHTTEFIDLAAALGPRELMEHAMKTYSALSLGETLVVQCSGSMFKLDVLEVR 187
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: V9E2N2_PHYPR (TRAF-type domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=V9E2N2_PHYPR) HSP 1 Score: 128 bits (321), Expect = 1.160e-28 Identity = 75/184 (40.76%), Postives = 107/184 (58.15%), Query Frame = 1 Query: 82 QCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633 QC S+ACLD LEFGDKI++P + L++ PL+F +V A + G + +C V EFS+P+ Q VF+PYW+MQ+L + EG V + S++ P G + +P +FLDLAA GPK LME ALRRYSVLS G+TI++++ + + VVE + S G+VD Sbjct: 34 QCFSVACLDMPHLEFGDKIVLPPKILVDLQCLKIPTPLIF-MVRAAGQDNQPEGDLAISS-QYCSVQEFSSPDGQ---------VFVPYWLMQNLGVREGGSVVVTSVVNLPRGVYCRLQPETTSFLDLAAEIGPKLLMETALRRYSVLSTGSTIVIEYGSVRYNVRVVELKPAPVVSLCGDVD 206
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Match: A0A6A3Q682_9STRA (C2H2-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q682_9STRA) HSP 1 Score: 126 bits (317), Expect = 7.850e-28 Identity = 73/184 (39.67%), Postives = 101/184 (54.89%), Query Frame = 1 Query: 82 QCHSMACLDREGLEFGDKIIMPQAAFQEAHRLRLKLPLLFKLVNADANTRRVIGPAGPAPCHFCGVLEFSAPEDQARAQTMLLKVFLPYWMMQSLLLVEGARVELRSILRPPAGSFVLFKPHDETFLDLAARQGPKALMEGALRRYSVLSEGATILVQHEGENFYLDVVEARTLDSSSAAGNVD 633 QC S+ACLD LEFGDK+++P E + P LFK+ ++ G P +C V EFSAPE Q VFLPYW+MQ+L + EG V + S+ P G + +P +FLDLAA+ GPK LME A RRYSVLS + I++++ +Y+ + E + S G+VD Sbjct: 27 QCFSVACLDMPHLEFGDKVVLPPKILLELKCSNISTPFLFKVRAGGVDSTEGNGIYRP---QYCSVQEFSAPEGQ---------VFLPYWLMQNLHVPEGGSVVVSSVTDLPRGIYCRLQPETTSFLDLAAKIGPKLLMETAFRRYSVLSMNSIIVIEYGNVRYYVRIAELKPASVVSLCGDVD 198 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1255.2063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1255.2063.1 >prot_L-elsbetiae_contig1255.2063.1 ID=prot_L-elsbetiae_contig1255.2063.1|Name=mRNA_L-elsbetiae_contig1255.2063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=410bp MSSPYVSTRALRLTRPPPGIFCKSYQCHSMACLDREGLEFGDKIIMPQAAback to top mRNA from alignment at L-elsbetiae_contig1255:564..3285- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1255.2063.1 ID=mRNA_L-elsbetiae_contig1255.2063.1|Name=mRNA_L-elsbetiae_contig1255.2063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2722bp|location=Sequence derived from alignment at L-elsbetiae_contig1255:564..3285- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1255:564..3285- >mRNA_L-elsbetiae_contig1255.2063.1 ID=mRNA_L-elsbetiae_contig1255.2063.1|Name=mRNA_L-elsbetiae_contig1255.2063.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2460bp|location=Sequence derived from alignment at L-elsbetiae_contig1255:564..3285- (Laminarionema elsbetiae ELsaHSoW15)back to top |