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Homology
BLAST of mRNA_L-elsbetiae_contig1253.2050.1 vs. uniprot
Match: A0A6H5JH57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH57_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 4.550e-12 Identity = 56/108 (51.85%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 31 NFAVSADGRRRMEEDYRLALAMQKGEAGAAAGDG-RGF------SAEPRFQRGLGQRLRLLRRFRVCRPITGNNSSGDGGGRGG---WRASSGSKGSQEDDHE*ELER 324
NFAV+AD RR+MEEDYRLALAMQKGEA AA G G RG A P G R+L GN G+ GG GG WR SSGSKG ++D E ELER
Sbjct: 31 NFAVTADERRQMEEDYRLALAMQKGEAAAANGTGGRGVPVAAPVQAPPASSAGSSSFSRML----------GNERDGNSGGAGGGGIWRRSSGSKGDKDD--EWELER 126
BLAST of mRNA_L-elsbetiae_contig1253.2050.1 vs. uniprot
Match: D8LDG4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG4_ECTSI) HSP 1 Score: 52.8 bits (125), Expect = 3.320e-5 Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 31 NFAVSADGRRRMEEDYRLALAMQKGEAGAAAGDGRG 138
NFAV+AD RR+MEEDYRLALAMQKGEA A G G
Sbjct: 381 NFAVTADERRQMEEDYRLALAMQKGEAAVANGPAAG 416
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 442 |
| Cds size | 249 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815446.3250406-UTR-L-elsbetiae_contig1253:22056..22157 | 1622815446.3250406-UTR-L-elsbetiae_contig1253:22056..22157 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1253 22057..22157 - |
| 1691682902.0450516-UTR-L-elsbetiae_contig1253:22056..22157 | 1691682902.0450516-UTR-L-elsbetiae_contig1253:22056..22157 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1253 22057..22157 - |
| 1622815446.3354356-UTR-L-elsbetiae_contig1253:22898..22927 | 1622815446.3354356-UTR-L-elsbetiae_contig1253:22898..22927 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1253 22899..22927 - |
| 1691682902.0550036-UTR-L-elsbetiae_contig1253:22898..22927 | 1691682902.0550036-UTR-L-elsbetiae_contig1253:22898..22927 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1253 22899..22927 - |
| 1622815446.3707042-UTR-L-elsbetiae_contig1253:23827..23890 | 1622815446.3707042-UTR-L-elsbetiae_contig1253:23827..23890 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1253 23828..23890 - |
| 1691682902.0784602-UTR-L-elsbetiae_contig1253:23827..23890 | 1691682902.0784602-UTR-L-elsbetiae_contig1253:23827..23890 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1253 23828..23890 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815446.3482683-CDS-L-elsbetiae_contig1253:22927..23103 | 1622815446.3482683-CDS-L-elsbetiae_contig1253:22927..23103 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1253 22928..23103 - |
| 1691682902.0628304-CDS-L-elsbetiae_contig1253:22927..23103 | 1691682902.0628304-CDS-L-elsbetiae_contig1253:22927..23103 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1253 22928..23103 - |
| 1622815446.358338-CDS-L-elsbetiae_contig1253:23754..23827 | 1622815446.358338-CDS-L-elsbetiae_contig1253:23754..23827 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1253 23755..23827 - |
| 1691682902.070701-CDS-L-elsbetiae_contig1253:23754..23827 | 1691682902.070701-CDS-L-elsbetiae_contig1253:23754..23827 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1253 23755..23827 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1253.2050.1 >prot_L-elsbetiae_contig1253.2050.1 ID=prot_L-elsbetiae_contig1253.2050.1|Name=mRNA_L-elsbetiae_contig1253.2050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MEEDYRLALAMQKGEAGAAAGDGRGFSAEPRFQRGLGQRLRLLRRFRVCR
PITGNNSSGDGGGRGGWRASSGSKGSQEDDHE* back to topmRNA from alignment at L-elsbetiae_contig1253:22057..23890- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1253.2050.1 ID=mRNA_L-elsbetiae_contig1253.2050.1|Name=mRNA_L-elsbetiae_contig1253.2050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1834bp|location=Sequence derived from alignment at L-elsbetiae_contig1253:22057..23890- (Laminarionema elsbetiae ELsaHSoW15)
CCTAGCCGGAAGCGGAGGACCACATGGGAAAACTTCGCCGTGTCGGCCGA
CGGGCGGAGGCGGATGGAGGAGGACTACCGCCTGGCGCTCGCGATGCAGA
AGGGTGAGGCAGGTGCTGCGGCTGGTGATGGGCGAGGTGAGGTTGCACTC
GTTTGTCGTGCACACCGGATGATCGTCATCTGACCACGGGCCTGAAGCCT
CCACACTGCAGTACACAGAGTTGAAGATACACATCGTATTTTCAGGAAGC
AGAGCAAGCGGTGGTGCTTCGAAGCCTAAACATACCATGCATGTCTGTTT
TTGCTCTCATCGCATAGATACAAGCATGCGGCGCGGCTCTCCCGGCCCGC
TGCTAACTCTACCAGTCTTGGATACACTGGCTTGCATGCATGCTGCGTGC
ATGCTGCGTGAGACACGAGACGGGCGCCGATTGCTGGAGAGGCTATCAGG
GTTCTGGCGCCTGCTCCTATCGCCTATGTGTTGCACCACCGCTTTTATCC
CACCAACCACCCAAATACTTTGCAATGCCTCATTCTACCGCAAGCTCCAA
GGATGAGGATCTCCACGCCACTCTCGAAACACCTGTTGACCAACCTGAGA
ACGGCGGCAGCCGAAGCCGATCGGTTCGAACCATTTGTGGCTGCATTTGT
GTATGTGTGTTTTCTTTGCCTGACTTTCGTCATCAAGAAGCCGAGTAAGG
ATAAACCGTGACAACGAACACCGTGCCGACAAGCAGACCACTGGCGTCCT
CCCTCGCCCGTCTACGCTTCTGCCACTCTTTGCCAAGGGTTCTCAGCGGA
GCCACGATTCCAGCGGGGCTTGGGCCAGAGGCTACGTCTTCTCCGTCGTT
TTCGAGTTTGCCGGCCAATCACAGGAAACAACAGCAGCGGCGATGGCGGC
GGCCGTGGTGGCTGGCGAGCGAGTAGCGGCAGCAAGGGTAGCCAAGAAGA
CGACCACGAGTAGGAGCTGGAACGGCAGCTCGGATCGAGAAGGTGGCGTG
CGTAGGCAGGTAGCCAACAGTAGCTCGTGTCTGTGCCGCAGTATGCCCGT
TGCCGCTGGAGGAGAGGGGCGGGGTTGCTTGTCTGCTGTGTGTATGCATG
CCGGCGGTCTGTGGTCAGCGGGGGATGCGTTGATCTGTTTGGTACTGTAT
TCTGCAGTCCTGCGGTGGACGAACGCACAACACGCCGGGTTGGTTGCGCG
GGTGGCGTGTGTTCCAAGTGGTCTATTTCAGACGCGGTCGCCTGGAACGA
GGAGGCTCCTCGATTGGCACCTTTGTTCTCGACAATAGAAGGGTTTTCCA
GCTCCCATGATTCTTGCCAGAATGGACTGGGGAGGGACACAGGAAGGGGG
CGGGCTCGGCACACCCTATAACGTAACCTATTTTTATTGTCTTGGTGTAC
GACGTCGTGTTGAGAGCGCAGTTACTCTACGGTAGCCGCATTGTCGCCCT
CGCCTGACTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGGCGGGTT
TTTTTTTTCTTTAGGATAAAAATTTTTCTGCGGTTTCGCGGCTTGCGTAG
GGTTGGGCGGNNNNNNNNNNTTTGTTTTTTGTACGCCGTCGTGTTGAGAT
CGCTGTTTCTCTCCGGGAGCCCCCTTTTCCCCCCCGCCTGGCTTCCCCCC
CCCCCCCCCTGCCCCATTCTCCCCGGGTACGTTATTTTTTTCTCAAGTTA
AAAGTCCTTCCTGCCTGATTGACGCTTGGATAGGCTCGAATCGCTGAGGC
AAGTGAAGCCGTAACCGCCGACAACGAGATGGGCGAGAAGGGCTCTTTTC
TTGATAGAACCGGCGGCGGCGGCAGCGATGGAGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1253:22057..23890- >mRNA_L-elsbetiae_contig1253.2050.1 ID=mRNA_L-elsbetiae_contig1253.2050.1|Name=mRNA_L-elsbetiae_contig1253.2050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig1253:22057..23890- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGGACTACCGCCTGGCGCTCGCGATGCAGAAGGGTGAGGCAGG
TGCTGCGGCTGGTGATGGGCGAGATGGAGGAGGACTACCGCCTGGCGCTC
GCGATGCAGAAGGGTGAGGCAGGTGCTGCGGCTGGTGATGGGCGAGGGTT
CTCAGCGGAGCCACGATTCCAGCGGGGCTTGGGCCAGAGGCTACGTCTTC
TCCGTCGTTTTCGAGTTTGCCGGCCAATCACAGGAAACAACAGCAGCGGC
GATGGCGGCGGCCGTGGTGGCTGGCGAGCGAGTAGCGGCAGCAAGGGTAG
CCAAGAAGACGACCACGAGTAGGGTTCTCAGCGGAGCCACGATTCCAGCG
GGGCTTGGGCCAGAGGCTACGTCTTCTCCGTCGTTTTCGAGTTTGCCGGC
CAATCACAGGAAACAACAGCAGCGGCGATGGCGGCGGCCGTGGTGGCTGG
CGAGCGAGTAGCGGCAGCAAGGGTAGCCAAGAAGACGACCACGAGTAG back to top
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