mRNA_L-elsbetiae_contig1250.2034.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1250.2034.1
Unique NamemRNA_L-elsbetiae_contig1250.2034.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1250.2034.1 vs. uniprot
Match: D7G7W8_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 6.230e-15
Identity = 54/136 (39.71%), Postives = 82/136 (60.29%), Query Frame = 3 
Query:  123 MVDVVTIVEGVLSPLRRIRAAIKGATKIKEDLRQRYDDYSSVVEQVKSKPEVVAANRIEHELERLTKLFARVEILIQEYMAAPGDGKLRKFNIITKRAANREEVESELNEIDAEVMRQLATMNVKGAVSLSGMIPS 530
            M+  V+I+  ++ PLRR R A++GA  +K  +R+R DDY  VV Q +SK   ++  RIE E+ +L   F  +  LI++Y A+PGD  L +    T RA   +E+  EL  ID ++ RQLAT+ V G + LS  +P+
Sbjct:    1 MMGRVSILATLIDPLRRAREALQGAGDVKAAMRERLDDYERVVNQFESKLGSISDRRIEPEVTKLLVHFDEITALIRKYTASPGDSLLVRLRKKTDRARLHKELAEELERIDKDMQRQLATIQVLGMMELSNPLPT 136
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BLAST of mRNA_L-elsbetiae_contig1250.2034.1 vs. uniprot
Match: A0A6H5JAC1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.090e-11
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 3 
Query:  963 TVAIVGDTVKEDKWSEYKDDHGTPFYHNPAKPEETTWEKPKDFDKEKNAGEPPPPTKPKTKG-PKY 1157
            TV IVGD  KEDKWSEY DD+G  +YHNP+K +ETT EKPKDFDK++    PP  T+ K K  PKY
Sbjct:   52 TVVIVGDECKEDKWSEYTDDNGKKYYHNPSK-DETTREKPKDFDKKEGKPAPPADTEKKEKKKPKY 116
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BLAST of mRNA_L-elsbetiae_contig1250.2034.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.130e-11
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 3 
Query:  123 MVDVVTIVEGVLSPLRRIRAAIKGATKIKEDLRQRYDDYSSVVEQVKSKPEVVAANRIEHELERLTKLFARVEILIQEYMAAPGDGKLRKFNIITKRAANREEVESELNEIDAEVMRQLATMNVKGAVSLSGMIPS 530
            M+  V+++  +  PL   R  ++GA  +K  +R+R DDY  VV Q  SK   ++  RIE E+ +L   F  +  L+++Y A+PGD  L +    T RA   +E+  EL  ID ++ RQLAT+ V G + LS   P+
Sbjct:    1 MMGRVSVLATLTDPLSSAREVLQGAGDVKAAMRERLDDYERVVNQFDSKLVSISDRRIEPEVTKLLIHFDEITALMRKYTASPGDSLLLRVRKKTDRARLHKELAEELECIDKDMQRQLATIQVLGMMELSDPFPT 136
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BLAST of mRNA_L-elsbetiae_contig1250.2034.1 vs. uniprot
Match: D7G840_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G840_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.060e-8
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:  963 TVAIVGDTVKEDKWSEYKDDHGTPFYHNPAKPEETTWEKPKDFDKEK 1103
            TVAIVGD  KEDKWSEY DD+G  +Y NP K  ETT EKPKDFDK+K
Sbjct:   52 TVAIVGDKCKEDKWSEYTDDNGKKYYDNPFK-NETTREKPKDFDKKK 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1250.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7W8_ECTSI6.230e-1539.71NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JAC1_9PHAE1.090e-1162.12WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5JSG2_9PHAE5.130e-1136.03AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G840_ECTSI1.060e-872.34WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1250contigL-elsbetiae_contig1250:759..3646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue8.8e-17
Seed eggNOG ortholog2880.D7G7W8
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons3
Model size1699
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1250.2034.1prot_L-elsbetiae_contig1250.2034.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1250 1292..2655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.7396383-UTR-L-elsbetiae_contig1250:758..12911622815444.7396383-UTR-L-elsbetiae_contig1250:758..1291Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1250 759..1291 -
1691682901.1055732-UTR-L-elsbetiae_contig1250:758..12911691682901.1055732-UTR-L-elsbetiae_contig1250:758..1291Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1250 759..1291 -
1622815444.7746027-UTR-L-elsbetiae_contig1250:2655..26571622815444.7746027-UTR-L-elsbetiae_contig1250:2655..2657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1250 2656..2657 -
1691682901.1424866-UTR-L-elsbetiae_contig1250:2655..26571691682901.1424866-UTR-L-elsbetiae_contig1250:2655..2657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1250 2656..2657 -
1622815444.7839825-UTR-L-elsbetiae_contig1250:3526..36461622815444.7839825-UTR-L-elsbetiae_contig1250:3526..3646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1250 3527..3646 -
1691682901.152356-UTR-L-elsbetiae_contig1250:3526..36461691682901.152356-UTR-L-elsbetiae_contig1250:3526..3646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1250 3527..3646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.752289-CDS-L-elsbetiae_contig1250:1291..17031622815444.752289-CDS-L-elsbetiae_contig1250:1291..1703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1250 1292..1703 -
1691682901.120123-CDS-L-elsbetiae_contig1250:1291..17031691682901.120123-CDS-L-elsbetiae_contig1250:1291..1703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1250 1292..1703 -
1622815444.7647107-CDS-L-elsbetiae_contig1250:2023..26551622815444.7647107-CDS-L-elsbetiae_contig1250:2023..2655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1250 2024..2655 -
1691682901.1309416-CDS-L-elsbetiae_contig1250:2023..26551691682901.1309416-CDS-L-elsbetiae_contig1250:2023..2655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1250 2024..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1250.2034.1

>prot_L-elsbetiae_contig1250.2034.1 ID=prot_L-elsbetiae_contig1250.2034.1|Name=mRNA_L-elsbetiae_contig1250.2034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=348bp
MVDVVTIVEGVLSPLRRIRAAIKGATKIKEDLRQRYDDYSSVVEQVKSKP
EVVAANRIEHELERLTKLFARVEILIQEYMAAPGDGKLRKFNIITKRAAN
REEVESELNEIDAEVMRQLATMNVKGAVSLSGMIPSLIKGLQFPSLEPIM
EILNEMRLQNAPAMAAAPAGVPKMSPSYVEQAGAFDPQMALAPFKAQSWD
RSTDQNGRPCWVNQNSRLACYSLVGEAGLPSTHYYRGGFPFTGAYSAPSM
TVAPMAMAPMGTMSMCMPLVAPAYTTATNNTVAIVGDTVKEDKWSEYKDD
HGTPFYHNPAKPEETTWEKPKDFDKEKNAGEPPPPTKPKTKGPKYKK*
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mRNA from alignment at L-elsbetiae_contig1250:759..3646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1250.2034.1 ID=mRNA_L-elsbetiae_contig1250.2034.1|Name=mRNA_L-elsbetiae_contig1250.2034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2888bp|location=Sequence derived from alignment at L-elsbetiae_contig1250:759..3646- (Laminarionema elsbetiae ELsaHSoW15)
TTCTTGTACGCTTATAGAGGTAGGCGTGACAAGAGCAGCTAGCGTGTACA
GAGCATACCCAGGGACGACGGAGACAACTTCGCCACGTGGCGCTCGTGCC
TTATCAGGCACTCATCACGGGTGAGAAATGGCGAATGCGGCGAAATACAA
CTGCTCCCACCAACTGCTCTCGGTGCCGTTCTGTGACACAAGCCTCCAAA
GTGCAGAGAGGCCCGCAAGCCCACAACGTATGGAGAGGCCCCCACCTTGC
GAGACAAAGAGATACGCGGTGAAGTTCCGCGCGCTGTCCGACGGCCTCGT
TCGTTTGCGATTCCAATTTTTGTTCTGATGCCCATCTTTTCACCGGTTTC
TGCCGTCGATTATGCGGGGTACATGTGCGGTGTTTGTGCGGGGTATATCT
GCGCGTGTTTATTCAATGTGCGAAGCAAAAGCTGTAACTGCACCAAAACG
CGCTCGCCCCCTGGAGTCACAAAGCGTGGCTCCATTGTGCTGAGCATGTG
GTGGCCTTGGTCGTGCCAGCTGTATCCGGCATAGCGCCGGTTGCACGGCA
GGCCGTGGTCTCCACGCACGTCGTCCGCGTATCGATGCGTATTTCACACA
AACTGGTGAGGCCAAGGACAGGAGCCCACACTCCAACAGTCTTGATGACG
ACACGCCGAACACGTTCTGGTGCCATCATGCAGTAGATTGCTGCCTGACA
TCCCGGGGATCGCTGCTTTGCTGGAGTCTGTTTCGGCCTACAGCAACGAT
CATTCCACCAGAACCGACAGCAGCGTCTACATCTGTCGTCCAGAGCAGCC
TTCGCTACAAGACCAGGCCCAGCAGCACGAGGCTAGGCAGTCTCCATAAG
GTGTTTGCGACCAAAATCGGCGAAGGCTCTCTCCACGATGCAGTGAACGA
TGTGGCCAACATTTGTCAATAAATTTCTCACCGTTTCAGTGTTGTTCCGC
GTTGATTCGCTCCTCTGTGCGTTACCGTCTTTTGGCCAGGAATGGTGGAT
GTGGTCACGATTGTGGAAGGTGTTCTTTCTCCTCTACGAAGGATTCGCGC
TGCCATAAAAGGCGCGACAAAGATCAAGGAGGACCTGAGGCAGCGGTATG
ACGACTATTCCTCTGTTGTCGAGCAGGTGAAAAGCAAACCTGAGGTGGTC
GCCGCTAATCGCATCGAGCACGAACTAGAACGGCTAACCAAGCTCTTCGC
TAGGGTCGAAATTCTGATCCAGGAATACATGGCGGCTCCTGGAGACGGCA
AGTTGAGGAAGTTCAACATAATCACGAAGCGAGCAGCCAACCGGGAGGAG
GTGGAAAGCGAGTTGAACGAAATCGACGCCGAGGTGATGCGCCAGCTCGC
CACCATGAACGTCAAGGGAGCTGTCAGTTTGTCAGGGATGATTCCGTCTC
TCATCAAAGGTCTGCAATTTCCAAGCTTGGAGCCTATCATGGAGATCCTC
AACGAAATGCGCCTTCAGAACGCGCCGGCCATGGCTGCAGCGCCGGCAGG
AGTGCCTAAAATGTCTCCCAGCTATGTGGAGCAGGCCGGCGCCTTCGACC
CACAGATGGCGCTCGCCCCCTTCAAAGCACAAAGCTGGGACCGGAGCACG
GATCAGAACGGTCGCCCTTGCTGGTGAGTACAACGCACCTGTACTCCCGC
GTGATGATCTCCATTGCCCACGTTGATGCGTTTCGCAGACCGAGGAAAAG
TCAAACTATCCAAGCTTGAAACCTGAACGGGTCTTTGTTGAGGTTACAGT
ACATTCGTCGCGCTACGATGTACTCCCTGCTCGAGCGAGATCCCCCAATG
CAACCTGCGCCGGAACTTTCATTTGGTTTAAACGGTAGACTGGGCATTCT
GAAAGAAAGCATACGCTTACGCCCCTGCTTTGGAGCACAATTACTCTGTG
AATGCATACCATCAGCGCGTCTCCCGCCGCTCGTTTCCTGCAGGGTAAAC
CAGAACTCAAGACTGGCCTGCTACTCCCTCGTAGGTGAGGCAGGTCTTCC
CTCGACACACTATTATCGTGGTGGGTTTCCCTTCACAGGAGCTTACTCTG
CCCCATCAATGACGGTGGCACCCATGGCAATGGCACCGATGGGAACTATG
TCCATGTGTATGCCTCTAGTGGCCCCGGCCTACACCACAGCCACCAACAA
CACGGTCGCGATAGTGGGGGACACGGTCAAGGAAGACAAGTGGAGCGAGT
ACAAAGATGATCACGGCACACCGTTCTACCACAACCCGGCGAAGCCGGAG
GAGACTACGTGGGAGAAGCCCAAAGACTTCGACAAGGAGAAAAACGCGGG
CGAGCCGCCCCCGCCAACCAAGCCCAAGACGAAGGGGCCAAAGTACAAGA
AGTAAGAAGCCAGTGGACTTTCCGTTTTCGCGATCTCTGTTTGGTTTGTT
GAGCAGGAACTACATAGACGATAGGCGGTGCGAACTATTGTCCAATCTCT
GTAAGGACACACAGACAGGACCTCACGTGCGTAGTGGTGCGAGCATACGA
GCCCCCGCTTTCGTTGCTATTTGGTGGATATACATATTATGTAGGTCCCG
GGTGGACGGCCGGGGCGAGGGAGGGCGGAAAGACTGGCTGTCCCTACCTC
GAGGGATCGGCTTTCTCAGGGTGTTTTCCGGGATGGCGGGGAGATCAAGG
GAGATGGTGGATTCCGTGCCACGGTTGCCAACTAGACAAACGTAGGAAGC
CAGGGCTTGCTCGTTCTTCTTTAGGGCGCATACCGAGAGATTCCAGCTGT
GGTATTTCAGCCAACACTTGCTTGGCTTCAAACAATGTTTAGTTGTAACC
GAGCCGATCCCTCTGCCATATGCGTCCTGCGACAACTGCGAAGTATCACC
TGGAGTTGCAGGCGACGGCATGGTCTTCAAGGAACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1250:759..3646-

>mRNA_L-elsbetiae_contig1250.2034.1 ID=mRNA_L-elsbetiae_contig1250.2034.1|Name=mRNA_L-elsbetiae_contig1250.2034.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2088bp|location=Sequence derived from alignment at L-elsbetiae_contig1250:759..3646- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGATGTGGTCACGATTGTGGAAGGTGTTCTTTCTCCTCTACGAAG
GATTCGCGCTGCCATAAAAGGCGCGACAAAGATCAAGGAGGACCTGAGGC
AGCGGTATGACGACTATTCCTCTGTTGTCGAGCAGGTGAAAAGCAAACCT
GAGGTGGTCGCCGCTAATCGCATCGAGCACGAACTAGAACGGCTAACCAA
GCTCTTCGCTAGGGTCGAAATTCTGATCCAGGAATACATGGCGGCTCCTG
GAGACGGCAAGTTGAGGAAGTTCAACATAATCACGAAGCGAGCAGCCAAC
CGGGAGGAGGTGGAAAGCGAGTTGAACGAAATCGACGCCGAGGTGATGCG
CCAGCTCGCCACCATGAACGTCAAGGGAGCTGTCAGTTTGTCAGGGATGA
TTCCGTCTCTCATCAAAGGTCTGCAATTTCCAAGCTTGGAGCCTATCATG
GAGATCCTCAACGAAATGCGCCTTCAGAACGCGCCGGCCATGGCTGCAGC
GCCGGCAGGAGTGCCTAAAATGTCTCCCAGCTATGTGGAGCAGGCCGGCG
CCTTCGACCCACAGATGGCGCTCGCCCCCTTCAAAGCACAAAGCTGGGAC
CGGAGCACGGATCAGAACGGTCGCCCTTGCTGATGGTGGATGTGGTCACG
ATTGTGGAAGGTGTTCTTTCTCCTCTACGAAGGATTCGCGCTGCCATAAA
AGGCGCGACAAAGATCAAGGAGGACCTGAGGCAGCGGTATGACGACTATT
CCTCTGTTGTCGAGCAGGTGAAAAGCAAACCTGAGGTGGTCGCCGCTAAT
CGCATCGAGCACGAACTAGAACGGCTAACCAAGCTCTTCGCTAGGGTCGA
AATTCTGATCCAGGAATACATGGCGGCTCCTGGAGACGGCAAGTTGAGGA
AGTTCAACATAATCACGAAGCGAGCAGCCAACCGGGAGGAGGTGGAAAGC
GAGTTGAACGAAATCGACGCCGAGGTGATGCGCCAGCTCGCCACCATGAA
CGTCAAGGGAGCTGTCAGTTTGTCAGGGATGATTCCGTCTCTCATCAAAG
GTCTGCAATTTCCAAGCTTGGAGCCTATCATGGAGATCCTCAACGAAATG
CGCCTTCAGAACGCGCCGGCCATGGCTGCAGCGCCGGCAGGAGTGCCTAA
AATGTCTCCCAGCTATGTGGAGCAGGCCGGCGCCTTCGACCCACAGATGG
CGCTCGCCCCCTTCAAAGCACAAAGCTGGGACCGGAGCACGGATCAGAAC
GGTCGCCCTTGCTGGGTAAACCAGAACTCAAGACTGGCCTGCTACTCCCT
CGTAGGTGAGGCAGGTCTTCCCTCGACACACTATTATCGTGGTGGGTTTC
CCTTCACAGGAGCTTACTCTGCCCCATCAATGACGGTGGCACCCATGGCA
ATGGCACCGATGGGAACTATGTCCATGTGTATGCCTCTAGTGGCCCCGGC
CTACACCACAGCCACCAACAACACGGTCGCGATAGTGGGGGACACGGTCA
AGGAAGACAAGTGGAGCGAGTACAAAGATGATCACGGCACACCGTTCTAC
CACAACCCGGCGAAGCCGGAGGAGACTACGTGGGAGAAGCCCAAAGACTT
CGACAAGGAGAAAAACGCGGGCGAGCCGCCCCCGCCAACCAAGCCCAAGA
CGAAGGGGCCAAAGTACAAGAAGTAAGGTAAACCAGAACTCAAGACTGGC
CTGCTACTCCCTCGTAGGTGAGGCAGGTCTTCCCTCGACACACTATTATC
GTGGTGGGTTTCCCTTCACAGGAGCTTACTCTGCCCCATCAATGACGGTG
GCACCCATGGCAATGGCACCGATGGGAACTATGTCCATGTGTATGCCTCT
AGTGGCCCCGGCCTACACCACAGCCACCAACAACACGGTCGCGATAGTGG
GGGACACGGTCAAGGAAGACAAGTGGAGCGAGTACAAAGATGATCACGGC
ACACCGTTCTACCACAACCCGGCGAAGCCGGAGGAGACTACGTGGGAGAA
GCCCAAAGACTTCGACAAGGAGAAAAACGCGGGCGAGCCGCCCCCGCCAA
CCAAGCCCAAGACGAAGGGGCCAAAGTACAAGAAGTAA
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